Gchil2451.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2451.t1
Unique Name	Gchil2451.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1162695..1164215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173027.Mic7113_6137
Preferred name	argD
PFAMs	Aminotran_3
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00006,RC00062
KEGG ko	ko:K00821
KEGG Reaction	R02283,R04475
KEGG Pathway	ko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG Module	M00016,M00028,M00845
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363
Evalue	6.51e-162
EggNOG OGs	COG4992@1\|root,COG4992@2\|Bacteria,1G0KF@1117\|Cyanobacteria,1H91B@1150\|Oscillatoriales
EC	2.6.1.11,2.6.1.17
Description	TIGRFAM acetylornithine and succinylornithine transaminases
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2451	Gchil2451	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1162695..1164215 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2451.t1.start1	Gchil2451.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1162695..1162697 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2451.t1.CDS1	Gchil2451.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1162695..1164215 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2451.t1.exon1	Gchil2451.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1162695..1164215 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2451.t1.stop1	Gchil2451.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1164213..1164215 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2451.t1	Gchil2451.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1162695..1164215 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1162695..1164215+
coding sequence from alignment at tig00004400_pilon:1162695..1164215+

mRNA sequence

>Gchil2451.t1 ID=Gchil2451.t1|Name=Gchil2451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp
MAHLVTSSAHGVRHLLLCANLHSVHSLSSTQQPPPTPTPHRSPLPPNSIS
DFAMSLSFSAPTFTQSFLPSLSLRATTGLTVTKPENFRTAPRPQTPCAVA
TDAAKLSPPKDFDSVVMSTYSRYPITMSHGQGLDLYDTEGTHYIDCVAGI
ATCTLGHAHPTLVDAVTRQMSRVSHVSNLYYIPEQGALASWLVSNSPADK
AFFCNSGGEANEAAIKLARKHWHLKHGSNPSDVPVIITAHQSFHGRTIAT
LTATGQPKYHNNWWPLVSGFEYVTYNDTAGLIELADSIGDNLAAILLEAC
QGEGGIHPGSPEFFAAARQICDKTGALLMCDEVQVGVGRTGKMWGFEHTG
VEPDVFTLAKGLGGGVPIGAMCCKAKCDVFEPGDHASTFGGNPLATAAGL
AVAKELDSGVLNNAAERGAQLISGLRRIAERFPTAIKEVRGLGLICGVEM
NQIIASDAVAKAMSKGLLLVPAGKHVVRFVPPLIISQGQVDSVLEIFENV
LAEMTS*

spliced messenger RNA

>Gchil2451.t1 ID=Gchil2451.t1|Name=Gchil2451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00004400_pilon:1162695..1164215+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCATCTTGTCACCAGCAGTGCGCACGGCGTTCGCCATCTCCTGCT
CTGCGCCAATCTCCACAGTGTGCACTCCCTCAGTTCAACGCAACAGCCAC
CGCCAACCCCTACTCCGCACCGCTCCCCACTACCGCCGAACTCCATAAGT
GACTTCGCAATGTCGCTTTCTTTCTCTGCCCCGACTTTCACCCAGTCGTT
CCTTCCATCGCTCTCGCTTAGAGCCACTACTGGCCTTACTGTCACCAAGC
CCGAGAATTTCAGAACTGCTCCCCGTCCGCAGACACCATGTGCCGTGGCC
ACCGATGCCGCCAAGCTCTCGCCGCCCAAGGACTTCGACTCCGTCGTCAT
GAGCACCTATTCTCGCTACCCTATAACCATGTCCCACGGACAGGGACTTG
ACCTCTATGACACGGAGGGCACTCACTACATCGACTGCGTGGCGGGTATT
GCTACTTGCACATTGGGCCATGCTCACCCTACTTTGGTCGACGCCGTCAC
CCGTCAGATGTCGCGCGTATCGCACGTATCAAATCTTTACTACATCCCAG
AACAAGGCGCGCTTGCTTCGTGGCTTGTATCAAACTCCCCTGCAGACAAG
GCTTTCTTCTGCAATTCTGGTGGAGAAGCCAACGAGGCTGCCATCAAGCT
TGCTCGTAAGCACTGGCACCTCAAACACGGTTCCAATCCATCTGATGTGC
CCGTCATAATCACCGCTCACCAGTCATTTCACGGGCGCACCATCGCTACA
CTCACAGCAACCGGCCAGCCCAAGTACCACAACAATTGGTGGCCTCTTGT
CTCTGGATTTGAATATGTTACATACAACGATACCGCTGGACTGATCGAGC
TGGCGGACAGCATCGGAGACAACCTCGCTGCAATCTTGCTCGAAGCGTGT
CAGGGTGAAGGTGGTATCCATCCTGGCTCACCAGAGTTCTTCGCGGCTGC
GCGTCAAATTTGCGACAAGACAGGTGCATTGTTGATGTGCGATGAAGTGC
AAGTTGGCGTGGGCCGAACAGGCAAGATGTGGGGTTTCGAACACACCGGC
GTCGAGCCAGATGTATTCACGCTTGCTAAGGGACTTGGTGGCGGCGTTCC
AATCGGCGCCATGTGTTGCAAGGCGAAGTGTGACGTTTTCGAACCCGGGG
ATCATGCAAGCACGTTTGGTGGAAACCCTCTGGCAACTGCCGCTGGCCTT
GCAGTGGCGAAGGAGCTGGACTCTGGGGTGTTGAACAACGCTGCGGAGCG
AGGTGCTCAGTTGATCAGTGGGCTACGACGAATTGCGGAAAGGTTCCCAA
CGGCCATCAAGGAAGTGCGAGGACTTGGGCTGATCTGTGGCGTGGAGATG
AACCAGATTATTGCGTCTGACGCGGTTGCCAAAGCAATGAGCAAAGGGCT
CTTGCTTGTGCCGGCTGGAAAGCATGTCGTGCGCTTCGTACCTCCTCTGA
TCATCTCACAAGGCCAGGTGGATAGCGTGCTAGAAATCTTCGAAAATGTA
CTTGCCGAGATGACCTCGTGA

protein sequence of Gchil2451.t1

>Gchil2451.t1 ID=Gchil2451.t1|Name=Gchil2451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=507bp
MAHLVTSSAHGVRHLLLCANLHSVHSLSSTQQPPPTPTPHRSPLPPNSIS
DFAMSLSFSAPTFTQSFLPSLSLRATTGLTVTKPENFRTAPRPQTPCAVA
TDAAKLSPPKDFDSVVMSTYSRYPITMSHGQGLDLYDTEGTHYIDCVAGI
ATCTLGHAHPTLVDAVTRQMSRVSHVSNLYYIPEQGALASWLVSNSPADK
AFFCNSGGEANEAAIKLARKHWHLKHGSNPSDVPVIITAHQSFHGRTIAT
LTATGQPKYHNNWWPLVSGFEYVTYNDTAGLIELADSIGDNLAAILLEAC
QGEGGIHPGSPEFFAAARQICDKTGALLMCDEVQVGVGRTGKMWGFEHTG
VEPDVFTLAKGLGGGVPIGAMCCKAKCDVFEPGDHASTFGGNPLATAAGL
AVAKELDSGVLNNAAERGAQLISGLRRIAERFPTAIKEVRGLGLICGVEM
NQIIASDAVAKAMSKGLLLVPAGKHVVRFVPPLIISQGQVDSVLEIFENV
LAEMTS*

mRNA from alignment at tig00004400_pilon:1162695..1164215+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2451.t1 ID=Gchil2451.t1|Name=Gchil2451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00004400_pilon:1162695..1164215+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCATCTTGTCACCAGCAGTGCGCACGGCGTTCGCCATCTCCTGCT
CTGCGCCAATCTCCACAGTGTGCACTCCCTCAGTTCAACGCAACAGCCAC
CGCCAACCCCTACTCCGCACCGCTCCCCACTACCGCCGAACTCCATAAGT
GACTTCGCAATGTCGCTTTCTTTCTCTGCCCCGACTTTCACCCAGTCGTT
CCTTCCATCGCTCTCGCTTAGAGCCACTACTGGCCTTACTGTCACCAAGC
CCGAGAATTTCAGAACTGCTCCCCGTCCGCAGACACCATGTGCCGTGGCC
ACCGATGCCGCCAAGCTCTCGCCGCCCAAGGACTTCGACTCCGTCGTCAT
GAGCACCTATTCTCGCTACCCTATAACCATGTCCCACGGACAGGGACTTG
ACCTCTATGACACGGAGGGCACTCACTACATCGACTGCGTGGCGGGTATT
GCTACTTGCACATTGGGCCATGCTCACCCTACTTTGGTCGACGCCGTCAC
CCGTCAGATGTCGCGCGTATCGCACGTATCAAATCTTTACTACATCCCAG
AACAAGGCGCGCTTGCTTCGTGGCTTGTATCAAACTCCCCTGCAGACAAG
GCTTTCTTCTGCAATTCTGGTGGAGAAGCCAACGAGGCTGCCATCAAGCT
TGCTCGTAAGCACTGGCACCTCAAACACGGTTCCAATCCATCTGATGTGC
CCGTCATAATCACCGCTCACCAGTCATTTCACGGGCGCACCATCGCTACA
CTCACAGCAACCGGCCAGCCCAAGTACCACAACAATTGGTGGCCTCTTGT
CTCTGGATTTGAATATGTTACATACAACGATACCGCTGGACTGATCGAGC
TGGCGGACAGCATCGGAGACAACCTCGCTGCAATCTTGCTCGAAGCGTGT
CAGGGTGAAGGTGGTATCCATCCTGGCTCACCAGAGTTCTTCGCGGCTGC
GCGTCAAATTTGCGACAAGACAGGTGCATTGTTGATGTGCGATGAAGTGC
AAGTTGGCGTGGGCCGAACAGGCAAGATGTGGGGTTTCGAACACACCGGC
GTCGAGCCAGATGTATTCACGCTTGCTAAGGGACTTGGTGGCGGCGTTCC
AATCGGCGCCATGTGTTGCAAGGCGAAGTGTGACGTTTTCGAACCCGGGG
ATCATGCAAGCACGTTTGGTGGAAACCCTCTGGCAACTGCCGCTGGCCTT
GCAGTGGCGAAGGAGCTGGACTCTGGGGTGTTGAACAACGCTGCGGAGCG
AGGTGCTCAGTTGATCAGTGGGCTACGACGAATTGCGGAAAGGTTCCCAA
CGGCCATCAAGGAAGTGCGAGGACTTGGGCTGATCTGTGGCGTGGAGATG
AACCAGATTATTGCGTCTGACGCGGTTGCCAAAGCAATGAGCAAAGGGCT
CTTGCTTGTGCCGGCTGGAAAGCATGTCGTGCGCTTCGTACCTCCTCTGA
TCATCTCACAAGGCCAGGTGGATAGCGTGCTAGAAATCTTCGAAAATGTA
CTTGCCGAGATGACCTCGTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:1162695..1164215+

>Gchil2451.t1 ID=Gchil2451.t1|Name=Gchil2451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00004400_pilon:1162695..1164215+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCATCTTGTCACCAGCAGTGCGCACGGCGTTCGCCATCTCCTGCT
CTGCGCCAATCTCCACAGTGTGCACTCCCTCAGTTCAACGCAACAGCCAC
CGCCAACCCCTACTCCGCACCGCTCCCCACTACCGCCGAACTCCATAAGT
GACTTCGCAATGTCGCTTTCTTTCTCTGCCCCGACTTTCACCCAGTCGTT
CCTTCCATCGCTCTCGCTTAGAGCCACTACTGGCCTTACTGTCACCAAGC
CCGAGAATTTCAGAACTGCTCCCCGTCCGCAGACACCATGTGCCGTGGCC
ACCGATGCCGCCAAGCTCTCGCCGCCCAAGGACTTCGACTCCGTCGTCAT
GAGCACCTATTCTCGCTACCCTATAACCATGTCCCACGGACAGGGACTTG
ACCTCTATGACACGGAGGGCACTCACTACATCGACTGCGTGGCGGGTATT
GCTACTTGCACATTGGGCCATGCTCACCCTACTTTGGTCGACGCCGTCAC
CCGTCAGATGTCGCGCGTATCGCACGTATCAAATCTTTACTACATCCCAG
AACAAGGCGCGCTTGCTTCGTGGCTTGTATCAAACTCCCCTGCAGACAAG
GCTTTCTTCTGCAATTCTGGTGGAGAAGCCAACGAGGCTGCCATCAAGCT
TGCTCGTAAGCACTGGCACCTCAAACACGGTTCCAATCCATCTGATGTGC
CCGTCATAATCACCGCTCACCAGTCATTTCACGGGCGCACCATCGCTACA
CTCACAGCAACCGGCCAGCCCAAGTACCACAACAATTGGTGGCCTCTTGT
CTCTGGATTTGAATATGTTACATACAACGATACCGCTGGACTGATCGAGC
TGGCGGACAGCATCGGAGACAACCTCGCTGCAATCTTGCTCGAAGCGTGT
CAGGGTGAAGGTGGTATCCATCCTGGCTCACCAGAGTTCTTCGCGGCTGC
GCGTCAAATTTGCGACAAGACAGGTGCATTGTTGATGTGCGATGAAGTGC
AAGTTGGCGTGGGCCGAACAGGCAAGATGTGGGGTTTCGAACACACCGGC
GTCGAGCCAGATGTATTCACGCTTGCTAAGGGACTTGGTGGCGGCGTTCC
AATCGGCGCCATGTGTTGCAAGGCGAAGTGTGACGTTTTCGAACCCGGGG
ATCATGCAAGCACGTTTGGTGGAAACCCTCTGGCAACTGCCGCTGGCCTT
GCAGTGGCGAAGGAGCTGGACTCTGGGGTGTTGAACAACGCTGCGGAGCG
AGGTGCTCAGTTGATCAGTGGGCTACGACGAATTGCGGAAAGGTTCCCAA
CGGCCATCAAGGAAGTGCGAGGACTTGGGCTGATCTGTGGCGTGGAGATG
AACCAGATTATTGCGTCTGACGCGGTTGCCAAAGCAATGAGCAAAGGGCT
CTTGCTTGTGCCGGCTGGAAAGCATGTCGTGCGCTTCGTACCTCCTCTGA
TCATCTCACAAGGCCAGGTGGATAGCGTGCTAGAAATCTTCGAAAATGTA
CTTGCCGAGATGACCTCGTGA