Gchil2464.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2464.t1
Unique NameGchil2464.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1221689..1222411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI38859
PFAMsRRM_1
Max annot lvl4776|Peronosporales
Evalue8.99e-32
EggNOG OGsKOG4206@1|root,KOG4206@2759|Eukaryota,3QCVE@4776|Peronosporales
DescriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2464Gchil2464Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1221689..1222411 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2464.t1.start1Gchil2464.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1221689..1221691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2464.t1.CDS1Gchil2464.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1221689..1222411 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2464.t1.exon1Gchil2464.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1221689..1222411 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2464.t1.stop1Gchil2464.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1222409..1222411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2464.t1Gchil2464.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1221689..1222411 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2464.t1 ID=Gchil2464.t1|Name=Gchil2464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=241bp
MDAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLR
GQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGD
SKQSRKRRAAKRRADQQAAKRARTEAEPSVAAPLPPVQPQAVPREPPPML
SPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGN
DTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK*
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spliced messenger RNA

>Gchil2464.t1 ID=Gchil2464.t1|Name=Gchil2464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004400_pilon:1221689..1222411+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCCCCAGCGCCATGCAGAACGCTGTACGTGCGAAATCTTCCGGA
TAAGCTCAAAAAGATTCGCCTCCGCCGTCTCCTCCACGCAGCCTTCACCC
CATACGGTCAAATCGTCCACATCATCGCCGAGAAGTCGCTCCCCCTTCGC
GGACAAGCCTTCATAACATTCCATAACCAAACCTCCGCCACAGCCGCCCT
TCGCAAACTAAACGAAACAGAATTCATGGGCAAGCAAATCTCCGTCAGCT
ACGCGCGCTCCCTCTCCGACAAAGCGGGCAGTCAGAAGCTGGGCGGCGAT
TCCAAGCAGTCGCGGAAGAGACGCGCCGCTAAGCGACGCGCCGATCAACA
AGCCGCAAAGCGCGCACGCACCGAAGCCGAGCCCAGTGTCGCCGCCCCAC
TACCGCCTGTTCAGCCTCAAGCCGTGCCGCGTGAACCGCCCCCTATGCTT
TCGCCTGCCGTGCCGAATCGCATCTTGTTCGTGCAGAATCTTCCGCGAGC
CTTGGAGCGAGGCGGAAAACCTGCGCCATTGGTGGATGTGCTCTCGGATT
TGTTTGCGCGCTTTGTGGGCTTTGTGGAGGTTCGCTCTGTGCCTGGCAAT
GATACTATTGCCTTTGTCGAGTTTGGTAATGAGGCGGAGGCCGCTGTTGC
GCTTTCTGGTTTACGACAACATCCACTGGGCACCCCGCCACAACCCATGA
AGCTTTCTTTCGCTAATAAATGA
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protein sequence of Gchil2464.t1

>Gchil2464.t1 ID=Gchil2464.t1|Name=Gchil2464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=241bp
MDAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLR
GQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGD
SKQSRKRRAAKRRADQQAAKRARTEAEPSVAAPLPPVQPQAVPREPPPML
SPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGN
DTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK*
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mRNA from alignment at tig00004400_pilon:1221689..1222411+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2464.t1 ID=Gchil2464.t1|Name=Gchil2464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004400_pilon:1221689..1222411+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCCCCAGCGCCATGCAGAACGCTGTACGTGCGAAATCTTCCGGA
TAAGCTCAAAAAGATTCGCCTCCGCCGTCTCCTCCACGCAGCCTTCACCC
CATACGGTCAAATCGTCCACATCATCGCCGAGAAGTCGCTCCCCCTTCGC
GGACAAGCCTTCATAACATTCCATAACCAAACCTCCGCCACAGCCGCCCT
TCGCAAACTAAACGAAACAGAATTCATGGGCAAGCAAATCTCCGTCAGCT
ACGCGCGCTCCCTCTCCGACAAAGCGGGCAGTCAGAAGCTGGGCGGCGAT
TCCAAGCAGTCGCGGAAGAGACGCGCCGCTAAGCGACGCGCCGATCAACA
AGCCGCAAAGCGCGCACGCACCGAAGCCGAGCCCAGTGTCGCCGCCCCAC
TACCGCCTGTTCAGCCTCAAGCCGTGCCGCGTGAACCGCCCCCTATGCTT
TCGCCTGCCGTGCCGAATCGCATCTTGTTCGTGCAGAATCTTCCGCGAGC
CTTGGAGCGAGGCGGAAAACCTGCGCCATTGGTGGATGTGCTCTCGGATT
TGTTTGCGCGCTTTGTGGGCTTTGTGGAGGTTCGCTCTGTGCCTGGCAAT
GATACTATTGCCTTTGTCGAGTTTGGTAATGAGGCGGAGGCCGCTGTTGC
GCTTTCTGGTTTACGACAACATCCACTGGGCACCCCGCCACAACCCATGA
AGCTTTCTTTCGCTAATAAATGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1221689..1222411+

>Gchil2464.t1 ID=Gchil2464.t1|Name=Gchil2464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00004400_pilon:1221689..1222411+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGCCCCAGCGCCATGCAGAACGCTGTACGTGCGAAATCTTCCGGA
TAAGCTCAAAAAGATTCGCCTCCGCCGTCTCCTCCACGCAGCCTTCACCC
CATACGGTCAAATCGTCCACATCATCGCCGAGAAGTCGCTCCCCCTTCGC
GGACAAGCCTTCATAACATTCCATAACCAAACCTCCGCCACAGCCGCCCT
TCGCAAACTAAACGAAACAGAATTCATGGGCAAGCAAATCTCCGTCAGCT
ACGCGCGCTCCCTCTCCGACAAAGCGGGCAGTCAGAAGCTGGGCGGCGAT
TCCAAGCAGTCGCGGAAGAGACGCGCCGCTAAGCGACGCGCCGATCAACA
AGCCGCAAAGCGCGCACGCACCGAAGCCGAGCCCAGTGTCGCCGCCCCAC
TACCGCCTGTTCAGCCTCAAGCCGTGCCGCGTGAACCGCCCCCTATGCTT
TCGCCTGCCGTGCCGAATCGCATCTTGTTCGTGCAGAATCTTCCGCGAGC
CTTGGAGCGAGGCGGAAAACCTGCGCCATTGGTGGATGTGCTCTCGGATT
TGTTTGCGCGCTTTGTGGGCTTTGTGGAGGTTCGCTCTGTGCCTGGCAAT
GATACTATTGCCTTTGTCGAGTTTGGTAATGAGGCGGAGGCCGCTGTTGC
GCTTTCTGGTTTACGACAACATCCACTGGGCACCCCGCCACAACCCATGA
AGCTTTCTTTCGCTAATAAATGA
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