Gchil2464.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2464.t1
Unique NameGchil2464.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length241
Homology
BLAST of Gchil2464.t1 vs. uniprot
Match: A0A2V3J0Q8_9FLOR (U2 small nuclear ribonucleoprotein B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0Q8_9FLOR)

HSP 1 Score: 300 bits (769), Expect = 3.620e-100
Identity = 169/256 (66.02%), Postives = 189/256 (73.83%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGDSKQSRKRRAAXXXXDQQAAKR---------------ARTEAEPSVAAP-LPPVQPQAVPREPPPMLSPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            MDAPAPCRTLYVRNLPDKLKK RLRRLLHAA +PYG++VHI+AEKS+PLRGQAFITFH Q SATAALRKL+ +EFMG  ISVSYAR+LSDKA S+KLGGDS  SR +RAA    D  A KR               A T    S A P  PP+    VP    P+ +PAVPNRILFVQN+P AL++  K   + DVLSDLFARF GFVEVRSVPG  TIAFVEF +E EAAVALSGL  HPLG PPQP+ +SFANK
Sbjct:    1 MDAPAPCRTLYVRNLPDKLKKHRLRRLLHAACSPYGRVVHIVAEKSIPLRGQAFITFHTQASATAALRKLHASEFMGNHISVSYARALSDKAASEKLGGDSTLSRNKRAAKRRADALAVKRDHIAAAEQQQQQHALASTAVPSSTAMPNAPPIVAAIVPH---PIAAPAVPNRILFVQNIPTALDKHAKKELVSDVLSDLFARFAGFVEVRSVPGKHTIAFVEFSSEQEAAVALSGLNAHPLGDPPQPIHVSFANK 253          
BLAST of Gchil2464.t1 vs. uniprot
Match: R7QCR0_CHOCR (\Probable U2 small nuclear ribonucleoprotein B (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCR0_CHOCR)

HSP 1 Score: 150 bits (378), Expect = 6.100e-43
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGDSKQSRK 106
            MDA  PCRTLYVRNLPDKL K +LRRLLHAAFTP+G +V I+AEK+L LRGQAFITF  Q+SAT ALRK + TEF+G+ +SV+YAR++SD+A S KLGGDS  SRK
Sbjct:    1 MDANPPCRTLYVRNLPDKLAKAKLRRLLHAAFTPHGHVVWIVAEKTLKLRGQAFITFEQQSSATQALRKTHATEFLGRVLSVTYARAVSDRAASAKLGGDSALSRK 106          
BLAST of Gchil2464.t1 vs. uniprot
Match: A0A7S0HCA2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HCA2_9EUKA)

HSP 1 Score: 131 bits (329), Expect = 1.440e-33
Identity = 97/251 (38.65%), Postives = 143/251 (56.97%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKA----GSQKLGGDSKQSRKRRAAXXXXDQQ---AAKRARTEAEPSVAAPLPPVQPQAVPRE----PPPMLSPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            M  PAP  T+YV N+ +K+ K  L++ L+AAF+ +G I+ +IA K+  +RGQAF+ F + T+AT A+R++    F  K + +SYA S SD      GS +    ++++ KR+A XXXX      A  + +  AE  VA P       A P E    PP   + A+PN+ILFV+NLP  +           +LS LF +F GF EVR VPG   IAFVEF N+ ++  A+ GL+   + TP   MK+++A +
Sbjct:   30 MAEPAPRETIYVNNINEKVSKDELKKSLYAAFSQFGPILDVIALKTFKMRGQAFVVFRDITAATQAVRQMQGFPFYEKPMMISYANSKSDAVAKLDGSYEAKDKAERASKRKAXXXXXXXXXXXALAKPKEVAEAGVATPAVGEAVAAAPVERKKAPPSAPTVALPNQILFVENLPDQVNE--------MMLSMLFQQFPGFKEVRLVPGKAGIAFVEFENDVQSGTAMQGLQNFKI-TPTNLMKITYAKR 271          
BLAST of Gchil2464.t1 vs. uniprot
Match: UPI000719A4EB (U1 small nuclear ribonucleoprotein A-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719A4EB)

HSP 1 Score: 129 bits (325), Expect = 3.630e-33
Identity = 98/259 (37.84%), Postives = 139/259 (53.67%), Query Frame = 0
Query:    6 PCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQK-------------LGGDSKQSRKRRA---AXXXXDQQAAKRARTEAEPSVAAPLPPVQPQAVPREPP----PMLSPAVP----NRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            P  T+Y+ NL +K+KK  L++ L+A F+ +GQI+ I+A K+L +RGQAF+ F +    T ALR +    F  K + ++Y++  SD    QK              G DS+ SRK R    A    DQQ A +A+    P  A+ +P +QP  VP+ P     P ++ A+P    N+ILF+ NLP              +LS LF +F GF EVR VPG   IAFVEF NE ++A A   L+   + TP   MK++FA K
Sbjct:    5 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKDINGGTNALRSMQGFPFYDKPMRIAYSKIDSDIIAKQKGTFVERPKKPKRVPGEDSQMSRKERKRAQAKKIEDQQQAVQAQRPQLPP-ASMMPGLQPSFVPQPPTMPGQPQVAAAIPEQPPNQILFLTNLPEETNE--------MMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENELQSAAAKDALQSFKI-TPTHAMKITFAKK 253          
BLAST of Gchil2464.t1 vs. uniprot
Match: D0N2K1_PHYIT (U1 small nuclear ribonucleoprotein A n=10 Tax=Phytophthora TaxID=4783 RepID=D0N2K1_PHYIT)

HSP 1 Score: 125 bits (315), Expect = 6.700e-32
Identity = 87/239 (36.40%), Postives = 136/239 (56.90%), Query Frame = 0
Query:    2 DAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGDSKQSRKRRAAXXXXDQQAAKRARTEAEPSVAAPLPPVQPQAVPREPPPMLSPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            D P P  TLY+ NL DK+K  R++  L+A  + YG+I+ I+  ++  LRGQA++TF +  SA++ALR +N T    K + + +A+  +D    ++     ++ RKR       +QQ  K+   +A  + +A        A PR P    +  +PN+ILF++ LP +  +        ++L  LF ++ GF EVR VPG   +AFVEFG+EA+AA+AL GL    L TP + +K+SFA K
Sbjct:   15 DVP-PNHTLYLNNLNDKIKADRMKATLYATLSQYGKILEIVMGRARRLRGQAWVTFDDVPSASSALRTVNGTTLFDKPVVIHFAKEKADVIARREGSFVPREKRKR---DPKPEQQTTKK---QASANGSAAATGSSTAAQPRMP----AQNLPNKILFLEELPESCNK--------EMLGVLFKQYQGFKEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKL-TPTEALKVSFAKK 233          
BLAST of Gchil2464.t1 vs. uniprot
Match: A0A5B8MSV7_9CHLO (U1 small nuclear ribonucleoprotein A n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSV7_9CHLO)

HSP 1 Score: 125 bits (314), Expect = 8.960e-32
Identity = 90/253 (35.57%), Postives = 137/253 (54.15%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSD-------------KAGSQKLGGDSKQSRKRRAAXXXXDQQAAKRARTEAEPSVAAPLPPVQPQAVPREPPPMLSPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            +D   P +T+YV NL +KL K  LR+ LHA F+ +G+I+ I+  K+  LRGQA++ F + TSAT ALR +    F  K + ++YA++ SD             KA + ++  + +++ ++RAA      +  ++A   A  ++A  L   +P               P+ ILFVQNLP        PA    +++ LF +F GF EVR V     IAFVEFGNE E++VALSGL+   + T    M++S+A K
Sbjct:    3 IDGSLPNQTVYVSNLYEKLSKDELRKSLHAVFSQFGKILDIVCMKNYRLRGQAWVVFEDITSATNALRLMQGFPFYDKPMKIAYAKTKSDAVAKLDGTYVSRDKAETARVNKEKREALQKRAAMRKGGSRPDQQAPFAAGAALAGTLDSEEP---------------PHNILFVQNLP--------PATSQAMIAMLFEQFPGFKEVRMVETRPGIAFVEFGNEMESSVALSGLQGFQI-TKENSMRVSYAKK 231          
BLAST of Gchil2464.t1 vs. uniprot
Match: D3BQD0_POLPP (U2 small nuclear ribonucleoprotein B n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQD0_POLPP)

HSP 1 Score: 125 bits (315), Expect = 9.290e-32
Identity = 90/233 (38.63%), Postives = 135/233 (57.94%), Query Frame = 0
Query:    9 TLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGG---DSKQSRKRRAAXXXXDQQAAKRARTEAEPSVAAPLPPVQPQAVPREPPPMLSPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFA 238
            T+YV NL +K  K +L   L++ F+PYG I+ I+A K   +RGQAFI F + TSA+ ALR++N  EF+G+ +S+ YA+S SD     KL G   + K+ R+     XXX +   K+  T A+P  A+       QA P +P      A PN+ILFV+NLP   E          +L+ LF++F GF  +        +AFVEF +++++AVA++ L+   + TP +PM +SFA
Sbjct:   30 TIYVNNLNEKPSKKKLTEQLYSLFSPYGSILEIVAAKRQKMRGQAFIVFKDITSASNALREMNGFEFLGRPMSIQYAKSKSDAVS--KLDGTYIEKKRERENDQDKXXXXKXQTKKPSTTAKPKAAST---ANAQAAPLQP----REAPPNKILFVENLPEQCEE--------MMLNMLFSQFPGFQGISMTTAKKGVAFVEFDDDSKSAVAMTHLQGFKV-TPEKPMVISFA 244          
BLAST of Gchil2464.t1 vs. uniprot
Match: H3AFC4_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AFC4_LATCH)

HSP 1 Score: 125 bits (313), Expect = 1.200e-31
Identity = 88/236 (37.29%), Postives = 126/236 (53.39%), Query Frame = 0
Query:    6 PCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGDSKQSRKRRAAXXXXDQQAAKRARTEAEPSVAAPLPPVQPQA-VPREPPPMLSPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            P  T+Y+ N+ D +KK  L+R L+A FT +GQI+ I+A K++ +RGQAF+ F   +SAT ALR+L    F GK + + YA++ SD     +     K+ RK +      +Q A    +   + +  A   PV  Q+ V +      +P  PN ILF+ NLP              +LS LF +F GF EVR VPG   IAFVEF NE +A  A   L+   + TP   MK+++A K
Sbjct:    5 PNHTIYINNINDSVKKEELKRSLYALFTQFGQILDIVALKTMKMRGQAFVVFKELSSATNALRQLQGFPFYGKPMRIQYAKTDSDLVAKMRGTFGDKERRKEKKKAKAQEQSANAANKKPGQVNQGAAQAPVNAQSNVAQNQQAQDNP--PNYILFLNNLPEETNE--------MMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRI-TPSHAMKITYAKK 229          
BLAST of Gchil2464.t1 vs. uniprot
Match: A0A662Y965_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y965_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.430e-31
Identity = 89/241 (36.93%), Postives = 137/241 (56.85%), Query Frame = 0
Query:    2 DAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGDSKQSRKR--RAAXXXXDQQAAKRARTEAEPSVAAPLPPVQPQAVPREPPPMLSPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            D P P  TLY+ NL DK+K+ R++  L++ F+ +G+I+ I+  ++  LRGQA++TF +  SA+ ALR +N +    K   V +A+  +D    ++     ++ RKR  + A     Q    + +     S AAP     P A+P  PP   +  VP++ILF+Q LP +  +        ++LS LF ++ GF EVR VPG   +AFVEFG+EA+A++AL GL    L TP   +K+SFA K
Sbjct:   13 DVP-PNHTLYLNNLNDKIKQDRMKAALYSGFSQHGKILEIVMGRARRLRGQAWLTFDDIASASNALRAMNGSVLFDKPAVVRFAKDKADVIARREGTFVPREKRKREPKPAADKATQLPGAKKQVGENGSAAAP----SPVALPPPPP---AQNVPHKILFLQELPESCNK--------EMLSVLFKQYHGFKEVRMVPGKKGLAFVEFGDEAQASIALQGLFGFKL-TPTDALKVSFAKK 236          
BLAST of Gchil2464.t1 vs. uniprot
Match: A0A1Y1IC41_KLENI (Putative RNA recognition motif containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IC41_KLENI)

HSP 1 Score: 124 bits (312), Expect = 2.780e-31
Identity = 91/256 (35.55%), Postives = 138/256 (53.91%), Query Frame = 0
Query:    5 APCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLRGQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGDSKQSRKRRAAXXXXDQQAAKRARTEAEPSVAAPLPPV-----------------QPQAVPREPPPML---SPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGNDTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK 240
            AP +T+YV NL +K+KK  +++ L+A F+ +G+I+ I+  K+L LRGQA++ F + T+AT ALR++    F  K + ++YA++ SD     K  G      KR+A      ++A KRA      + A P+P                    P      PPPM    +PA PN +LFV+NLP    +         +LS LF +F GF EVR +     IAFVEF +E ++ VA+SGL+ + + TP  PM +++A K
Sbjct:   11 APNQTIYVSNLNEKIKKEEMKKSLYAVFSQFGKILDIVNLKTLKLRGQAWVVFDDITAATNALRQMQGFPFYDKPMKIAYAKTKSDAVS--KADGTFVPREKRKAIEEREKEKARKRA------AAAGPVPAALXXXXXXXXXXXXXXXXXPAYGYGMPPPMAVPEAPAPPNNLLFVENLPLEASK--------LMLSTLFNQFPGFKEVRMIESKPGIAFVEFSDENQSTVAMSGLQGYRI-TPTNPMLITYAKK 249          
The following BLAST results are available for this feature:
BLAST of Gchil2464.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0Q8_9FLOR3.620e-10066.02U2 small nuclear ribonucleoprotein B n=1 Tax=Graci... [more]
R7QCR0_CHOCR6.100e-4370.75\Probable U2 small nuclear ribonucleoprotein B (Fr... [more]
A0A7S0HCA2_9EUKA1.440e-3338.65Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
UPI000719A4EB3.630e-3337.84U1 small nuclear ribonucleoprotein A-like n=1 Tax=... [more]
D0N2K1_PHYIT6.700e-3236.40U1 small nuclear ribonucleoprotein A n=10 Tax=Phyt... [more]
A0A5B8MSV7_9CHLO8.960e-3235.57U1 small nuclear ribonucleoprotein A n=1 Tax=Chlor... [more]
D3BQD0_POLPP9.290e-3238.63U2 small nuclear ribonucleoprotein B n=1 Tax=Polys... [more]
H3AFC4_LATCH1.200e-3137.29Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
A0A662Y965_9STRA1.430e-3136.93Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1Y1IC41_KLENI2.780e-3135.55Putative RNA recognition motif containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..146
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 5..240
NoneNo IPR availablePANTHERPTHR10501:SF13U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 5..240
NoneNo IPR availableCDDcd12246RRM1_U1A_likecoord: 9..86
e-value: 1.63879E-33
score: 114.163
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 155..236
e-value: 2.35365E-19
score: 77.2239
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 158..236
e-value: 0.22
score: 12.4
coord: 9..83
e-value: 1.3E-12
score: 57.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 10..80
e-value: 7.3E-11
score: 41.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..87
score: 15.101589
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..240
score: 9.831471
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..104
e-value: 8.2E-24
score: 85.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 149..240
e-value: 2.6E-12
score: 48.6
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1221689..1222411 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2464.t1Gchil2464.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004400_pilon 1221689..1222411 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2464.t1 ID=Gchil2464.t1|Name=Gchil2464.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=241bp
MDAPAPCRTLYVRNLPDKLKKIRLRRLLHAAFTPYGQIVHIIAEKSLPLR
GQAFITFHNQTSATAALRKLNETEFMGKQISVSYARSLSDKAGSQKLGGD
SKQSRKRRAAKRRADQQAAKRARTEAEPSVAAPLPPVQPQAVPREPPPML
SPAVPNRILFVQNLPRALERGGKPAPLVDVLSDLFARFVGFVEVRSVPGN
DTIAFVEFGNEAEAAVALSGLRQHPLGTPPQPMKLSFANK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf