Gchil2633.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2633.t1
Unique Name	Gchil2633.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	788

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:2074607..2076970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0TBI9
PFAMs	Inositol_P
Max annot lvl	2836\|Bacillariophyta
KEGG rclass	RC00078
KEGG ko	ko:K01082
KEGG Reaction	R00188,R00508
KEGG Pathway	ko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130
Evalue	6.06e-65
EggNOG OGs	COG1218@1\|root,KOG3099@2759\|Eukaryota,2XD6M@2836\|Bacillariophyta
EC	3.1.3.7
Description	Inositol monophosphatase family
COG category	F
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2633	Gchil2633	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 2074607..2076970 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2633.t1.start1	Gchil2633.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 2074607..2074609 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2633.t1.CDS1	Gchil2633.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 2074607..2076970 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2633.t1.exon1	Gchil2633.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 2074607..2076970 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2633.t1.stop1	Gchil2633.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 2076968..2076970 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2633.t1	Gchil2633.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 2074607..2076970 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:2074607..2076970+
coding sequence from alignment at tig00004400_pilon:2074607..2076970+

mRNA sequence

>Gchil2633.t1 ID=Gchil2633.t1|Name=Gchil2633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=788bp
MVTNLQPSDTVDARTVLIHCQNVAYAAAKVVRDHVAESQNGAKSREQEFG
NQPFLTRGVVLAAGLEARTTEFLRSKCARLSVQLTKNNDAQTNTSAAHIP
PLAVSELPFHCDVPEHFRSISRKEIEVLVHVGSDPHAIRPGGSAELYIVI
GITIARRSVACVFCRSIKDEPPVVAVLDGGLQNMQPGNSENAATEDSKTP
VLVSSCFENGFDAANVLKCIGPCVTLEGSSFVEQSLTVASGKAHLCIWTP
AVNSSVQAGMEAIISASGGQVTDVFGNKFQYRSSESHSGYGFIASSKSFA
VARGKRGHWQICHTWRKAMAFDHLLGDSGLIVNEHAQATDIALDTAGNAM
TAAWLSKILGREVLKFEARESTAVRYLMSNACRLYLKYEQSRGEESRNVF
VKRVAMDELEHVRYKMKMAPHKLSRDVRSYQVEAAFLKTAECKRFRTDRT
RIVTAHYIESDVAAENVPAMFSRFLFVLEDFGEQHGWYQSGLLGYDESIA
AMDALASFHAFFWNGREMDGYEDVKKSVWSQATYWLPSRQASDCFEKLAQ
YWNAHRERFGDVFDDVASVSNVIDAENFGEMLERYAMGSAEIVHGYGLHE
EHNERTLIHGDAKAANMFFRRTQGGGGDSVDLEVGLIDLQWCGWGHAGVD
VAYVMACAVDAEVLGDDSMETKILEEYYERLVKYLASFEKTRDEGKHRKI
MEFGNLKRVYEEAIVDLTRVVVGYHWVRIAASVEVLEERATQMGSNSYNK
SVACARWLIGRCARILADKCLQEEGRDWLGGLNTKRG*

spliced messenger RNA

>Gchil2633.t1 ID=Gchil2633.t1|Name=Gchil2633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2364bp|location=Sequence derived from alignment at tig00004400_pilon:2074607..2076970+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACTAATCTTCAGCCTTCAGACACCGTAGACGCAAGGACGGTTCT
GATTCACTGCCAGAACGTGGCTTACGCAGCTGCAAAAGTTGTCCGTGATC
ACGTCGCAGAGAGTCAAAATGGGGCGAAGAGCCGGGAACAAGAATTTGGA
AATCAACCTTTCCTCACAAGGGGTGTTGTGCTAGCTGCAGGACTGGAGGC
CAGGACTACAGAGTTTCTGCGTTCCAAGTGCGCTCGGTTGAGCGTGCAGC
TCACGAAGAACAATGATGCACAAACTAATACCTCTGCAGCTCATATACCT
CCTCTCGCTGTGAGTGAGCTCCCATTTCACTGTGATGTTCCGGAACATTT
TCGCAGTATCTCGAGAAAAGAAATTGAAGTCTTGGTTCATGTGGGCTCCG
ACCCGCACGCGATTAGACCAGGAGGGAGTGCGGAGTTGTACATTGTCATT
GGGATTACGATTGCAAGAAGGTCTGTGGCTTGTGTCTTTTGCAGGAGCAT
AAAAGATGAGCCCCCAGTGGTCGCCGTTCTGGACGGCGGACTGCAGAACA
TGCAACCCGGGAACTCGGAAAACGCAGCAACCGAGGACAGCAAGACGCCC
GTGCTAGTGTCATCATGTTTTGAAAATGGTTTCGATGCTGCGAATGTCTT
GAAATGCATCGGCCCTTGCGTAACTTTGGAGGGTTCAAGCTTCGTGGAAC
AAAGCCTCACTGTTGCCAGCGGCAAAGCGCATTTATGCATTTGGACTCCC
GCTGTTAACAGTTCCGTTCAGGCAGGTATGGAAGCCATAATCTCAGCGTC
TGGCGGTCAGGTCACCGACGTGTTCGGAAACAAATTTCAGTACAGAAGTT
CTGAAAGTCACTCTGGATATGGCTTCATCGCATCGAGCAAAAGCTTTGCG
GTGGCACGAGGAAAAAGAGGACACTGGCAGATTTGTCATACATGGCGAAA
AGCAATGGCGTTTGACCATTTGCTGGGCGACAGCGGGTTGATTGTAAATG
AACACGCCCAAGCAACGGACATCGCCTTGGACACAGCTGGTAATGCAATG
ACAGCTGCGTGGCTGTCCAAAATTTTAGGTAGAGAGGTGCTCAAGTTCGA
GGCACGTGAATCAACCGCTGTGCGCTACCTGATGTCAAATGCTTGTAGAT
TGTATTTGAAGTATGAGCAGAGCAGGGGGGAAGAAAGCAGGAATGTGTTT
GTGAAGCGAGTGGCAATGGATGAGCTGGAACATGTGCGGTACAAGATGAA
GATGGCACCCCACAAATTATCGCGAGACGTACGTTCCTATCAAGTTGAGG
CAGCCTTTCTCAAAACAGCCGAATGCAAACGATTTCGCACCGACCGTACT
CGAATTGTGACCGCACACTACATCGAATCTGATGTGGCGGCGGAAAATGT
TCCTGCAATGTTCAGTCGGTTTCTTTTTGTGTTGGAAGATTTTGGTGAGC
AGCATGGATGGTACCAGAGTGGACTGCTAGGATACGACGAGAGCATTGCT
GCTATGGATGCGTTGGCCAGCTTTCACGCATTTTTCTGGAACGGACGCGA
AATGGATGGCTACGAGGATGTGAAAAAAAGTGTGTGGAGCCAGGCAACTT
ACTGGCTTCCCAGTCGCCAGGCAAGCGATTGCTTTGAAAAACTGGCGCAA
TACTGGAACGCGCATCGTGAACGTTTTGGAGACGTGTTCGATGATGTGGC
ATCTGTGTCAAATGTGATTGATGCGGAGAATTTTGGAGAGATGCTTGAAC
GATATGCGATGGGAAGTGCGGAGATCGTACACGGATACGGATTGCATGAG
GAGCATAACGAAAGAACGCTGATACACGGAGACGCCAAGGCGGCTAACAT
GTTCTTCCGGAGGACACAGGGTGGTGGAGGGGATAGCGTTGATCTGGAGG
TGGGTCTAATCGACTTGCAGTGGTGTGGATGGGGACACGCCGGTGTGGAC
GTGGCTTATGTGATGGCTTGTGCTGTGGACGCAGAGGTGCTTGGTGACGA
TAGCATGGAGACGAAAATTTTGGAGGAATATTATGAAAGATTGGTGAAAT
ATTTGGCATCATTTGAAAAGACGCGTGATGAAGGCAAACACAGAAAGATT
ATGGAGTTTGGGAATTTGAAGCGTGTGTATGAGGAAGCAATAGTTGATTT
GACTCGAGTGGTTGTGGGATATCATTGGGTGAGAATTGCAGCGAGCGTTG
AAGTTTTGGAGGAACGAGCAACGCAGATGGGATCCAATTCGTATAATAAG
AGCGTGGCGTGCGCAAGATGGCTGATTGGGCGGTGTGCGCGTATTTTGGC
GGACAAGTGTTTGCAGGAGGAGGGTCGCGACTGGTTGGGAGGGCTTAACA
CGAAACGCGGCTGA

protein sequence of Gchil2633.t1

>Gchil2633.t1 ID=Gchil2633.t1|Name=Gchil2633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=788bp
MVTNLQPSDTVDARTVLIHCQNVAYAAAKVVRDHVAESQNGAKSREQEFG
NQPFLTRGVVLAAGLEARTTEFLRSKCARLSVQLTKNNDAQTNTSAAHIP
PLAVSELPFHCDVPEHFRSISRKEIEVLVHVGSDPHAIRPGGSAELYIVI
GITIARRSVACVFCRSIKDEPPVVAVLDGGLQNMQPGNSENAATEDSKTP
VLVSSCFENGFDAANVLKCIGPCVTLEGSSFVEQSLTVASGKAHLCIWTP
AVNSSVQAGMEAIISASGGQVTDVFGNKFQYRSSESHSGYGFIASSKSFA
VARGKRGHWQICHTWRKAMAFDHLLGDSGLIVNEHAQATDIALDTAGNAM
TAAWLSKILGREVLKFEARESTAVRYLMSNACRLYLKYEQSRGEESRNVF
VKRVAMDELEHVRYKMKMAPHKLSRDVRSYQVEAAFLKTAECKRFRTDRT
RIVTAHYIESDVAAENVPAMFSRFLFVLEDFGEQHGWYQSGLLGYDESIA
AMDALASFHAFFWNGREMDGYEDVKKSVWSQATYWLPSRQASDCFEKLAQ
YWNAHRERFGDVFDDVASVSNVIDAENFGEMLERYAMGSAEIVHGYGLHE
EHNERTLIHGDAKAANMFFRRTQGGGGDSVDLEVGLIDLQWCGWGHAGVD
VAYVMACAVDAEVLGDDSMETKILEEYYERLVKYLASFEKTRDEGKHRKI
MEFGNLKRVYEEAIVDLTRVVVGYHWVRIAASVEVLEERATQMGSNSYNK
SVACARWLIGRCARILADKCLQEEGRDWLGGLNTKRG*

mRNA from alignment at tig00004400_pilon:2074607..2076970+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2633.t1 ID=Gchil2633.t1|Name=Gchil2633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2364bp|location=Sequence derived from alignment at tig00004400_pilon:2074607..2076970+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACTAATCTTCAGCCTTCAGACACCGTAGACGCAAGGACGGTTCT
GATTCACTGCCAGAACGTGGCTTACGCAGCTGCAAAAGTTGTCCGTGATC
ACGTCGCAGAGAGTCAAAATGGGGCGAAGAGCCGGGAACAAGAATTTGGA
AATCAACCTTTCCTCACAAGGGGTGTTGTGCTAGCTGCAGGACTGGAGGC
CAGGACTACAGAGTTTCTGCGTTCCAAGTGCGCTCGGTTGAGCGTGCAGC
TCACGAAGAACAATGATGCACAAACTAATACCTCTGCAGCTCATATACCT
CCTCTCGCTGTGAGTGAGCTCCCATTTCACTGTGATGTTCCGGAACATTT
TCGCAGTATCTCGAGAAAAGAAATTGAAGTCTTGGTTCATGTGGGCTCCG
ACCCGCACGCGATTAGACCAGGAGGGAGTGCGGAGTTGTACATTGTCATT
GGGATTACGATTGCAAGAAGGTCTGTGGCTTGTGTCTTTTGCAGGAGCAT
AAAAGATGAGCCCCCAGTGGTCGCCGTTCTGGACGGCGGACTGCAGAACA
TGCAACCCGGGAACTCGGAAAACGCAGCAACCGAGGACAGCAAGACGCCC
GTGCTAGTGTCATCATGTTTTGAAAATGGTTTCGATGCTGCGAATGTCTT
GAAATGCATCGGCCCTTGCGTAACTTTGGAGGGTTCAAGCTTCGTGGAAC
AAAGCCTCACTGTTGCCAGCGGCAAAGCGCATTTATGCATTTGGACTCCC
GCTGTTAACAGTTCCGTTCAGGCAGGTATGGAAGCCATAATCTCAGCGTC
TGGCGGTCAGGTCACCGACGTGTTCGGAAACAAATTTCAGTACAGAAGTT
CTGAAAGTCACTCTGGATATGGCTTCATCGCATCGAGCAAAAGCTTTGCG
GTGGCACGAGGAAAAAGAGGACACTGGCAGATTTGTCATACATGGCGAAA
AGCAATGGCGTTTGACCATTTGCTGGGCGACAGCGGGTTGATTGTAAATG
AACACGCCCAAGCAACGGACATCGCCTTGGACACAGCTGGTAATGCAATG
ACAGCTGCGTGGCTGTCCAAAATTTTAGGTAGAGAGGTGCTCAAGTTCGA
GGCACGTGAATCAACCGCTGTGCGCTACCTGATGTCAAATGCTTGTAGAT
TGTATTTGAAGTATGAGCAGAGCAGGGGGGAAGAAAGCAGGAATGTGTTT
GTGAAGCGAGTGGCAATGGATGAGCTGGAACATGTGCGGTACAAGATGAA
GATGGCACCCCACAAATTATCGCGAGACGTACGTTCCTATCAAGTTGAGG
CAGCCTTTCTCAAAACAGCCGAATGCAAACGATTTCGCACCGACCGTACT
CGAATTGTGACCGCACACTACATCGAATCTGATGTGGCGGCGGAAAATGT
TCCTGCAATGTTCAGTCGGTTTCTTTTTGTGTTGGAAGATTTTGGTGAGC
AGCATGGATGGTACCAGAGTGGACTGCTAGGATACGACGAGAGCATTGCT
GCTATGGATGCGTTGGCCAGCTTTCACGCATTTTTCTGGAACGGACGCGA
AATGGATGGCTACGAGGATGTGAAAAAAAGTGTGTGGAGCCAGGCAACTT
ACTGGCTTCCCAGTCGCCAGGCAAGCGATTGCTTTGAAAAACTGGCGCAA
TACTGGAACGCGCATCGTGAACGTTTTGGAGACGTGTTCGATGATGTGGC
ATCTGTGTCAAATGTGATTGATGCGGAGAATTTTGGAGAGATGCTTGAAC
GATATGCGATGGGAAGTGCGGAGATCGTACACGGATACGGATTGCATGAG
GAGCATAACGAAAGAACGCTGATACACGGAGACGCCAAGGCGGCTAACAT
GTTCTTCCGGAGGACACAGGGTGGTGGAGGGGATAGCGTTGATCTGGAGG
TGGGTCTAATCGACTTGCAGTGGTGTGGATGGGGACACGCCGGTGTGGAC
GTGGCTTATGTGATGGCTTGTGCTGTGGACGCAGAGGTGCTTGGTGACGA
TAGCATGGAGACGAAAATTTTGGAGGAATATTATGAAAGATTGGTGAAAT
ATTTGGCATCATTTGAAAAGACGCGTGATGAAGGCAAACACAGAAAGATT
ATGGAGTTTGGGAATTTGAAGCGTGTGTATGAGGAAGCAATAGTTGATTT
GACTCGAGTGGTTGTGGGATATCATTGGGTGAGAATTGCAGCGAGCGTTG
AAGTTTTGGAGGAACGAGCAACGCAGATGGGATCCAATTCGTATAATAAG
AGCGTGGCGTGCGCAAGATGGCTGATTGGGCGGTGTGCGCGTATTTTGGC
GGACAAGTGTTTGCAGGAGGAGGGTCGCGACTGGTTGGGAGGGCTTAACA
CGAAACGCGGCTGA

Coding sequence (CDS) from alignment at tig00004400_pilon:2074607..2076970+

>Gchil2633.t1 ID=Gchil2633.t1|Name=Gchil2633.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2364bp|location=Sequence derived from alignment at tig00004400_pilon:2074607..2076970+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACTAATCTTCAGCCTTCAGACACCGTAGACGCAAGGACGGTTCT
GATTCACTGCCAGAACGTGGCTTACGCAGCTGCAAAAGTTGTCCGTGATC
ACGTCGCAGAGAGTCAAAATGGGGCGAAGAGCCGGGAACAAGAATTTGGA
AATCAACCTTTCCTCACAAGGGGTGTTGTGCTAGCTGCAGGACTGGAGGC
CAGGACTACAGAGTTTCTGCGTTCCAAGTGCGCTCGGTTGAGCGTGCAGC
TCACGAAGAACAATGATGCACAAACTAATACCTCTGCAGCTCATATACCT
CCTCTCGCTGTGAGTGAGCTCCCATTTCACTGTGATGTTCCGGAACATTT
TCGCAGTATCTCGAGAAAAGAAATTGAAGTCTTGGTTCATGTGGGCTCCG
ACCCGCACGCGATTAGACCAGGAGGGAGTGCGGAGTTGTACATTGTCATT
GGGATTACGATTGCAAGAAGGTCTGTGGCTTGTGTCTTTTGCAGGAGCAT
AAAAGATGAGCCCCCAGTGGTCGCCGTTCTGGACGGCGGACTGCAGAACA
TGCAACCCGGGAACTCGGAAAACGCAGCAACCGAGGACAGCAAGACGCCC
GTGCTAGTGTCATCATGTTTTGAAAATGGTTTCGATGCTGCGAATGTCTT
GAAATGCATCGGCCCTTGCGTAACTTTGGAGGGTTCAAGCTTCGTGGAAC
AAAGCCTCACTGTTGCCAGCGGCAAAGCGCATTTATGCATTTGGACTCCC
GCTGTTAACAGTTCCGTTCAGGCAGGTATGGAAGCCATAATCTCAGCGTC
TGGCGGTCAGGTCACCGACGTGTTCGGAAACAAATTTCAGTACAGAAGTT
CTGAAAGTCACTCTGGATATGGCTTCATCGCATCGAGCAAAAGCTTTGCG
GTGGCACGAGGAAAAAGAGGACACTGGCAGATTTGTCATACATGGCGAAA
AGCAATGGCGTTTGACCATTTGCTGGGCGACAGCGGGTTGATTGTAAATG
AACACGCCCAAGCAACGGACATCGCCTTGGACACAGCTGGTAATGCAATG
ACAGCTGCGTGGCTGTCCAAAATTTTAGGTAGAGAGGTGCTCAAGTTCGA
GGCACGTGAATCAACCGCTGTGCGCTACCTGATGTCAAATGCTTGTAGAT
TGTATTTGAAGTATGAGCAGAGCAGGGGGGAAGAAAGCAGGAATGTGTTT
GTGAAGCGAGTGGCAATGGATGAGCTGGAACATGTGCGGTACAAGATGAA
GATGGCACCCCACAAATTATCGCGAGACGTACGTTCCTATCAAGTTGAGG
CAGCCTTTCTCAAAACAGCCGAATGCAAACGATTTCGCACCGACCGTACT
CGAATTGTGACCGCACACTACATCGAATCTGATGTGGCGGCGGAAAATGT
TCCTGCAATGTTCAGTCGGTTTCTTTTTGTGTTGGAAGATTTTGGTGAGC
AGCATGGATGGTACCAGAGTGGACTGCTAGGATACGACGAGAGCATTGCT
GCTATGGATGCGTTGGCCAGCTTTCACGCATTTTTCTGGAACGGACGCGA
AATGGATGGCTACGAGGATGTGAAAAAAAGTGTGTGGAGCCAGGCAACTT
ACTGGCTTCCCAGTCGCCAGGCAAGCGATTGCTTTGAAAAACTGGCGCAA
TACTGGAACGCGCATCGTGAACGTTTTGGAGACGTGTTCGATGATGTGGC
ATCTGTGTCAAATGTGATTGATGCGGAGAATTTTGGAGAGATGCTTGAAC
GATATGCGATGGGAAGTGCGGAGATCGTACACGGATACGGATTGCATGAG
GAGCATAACGAAAGAACGCTGATACACGGAGACGCCAAGGCGGCTAACAT
GTTCTTCCGGAGGACACAGGGTGGTGGAGGGGATAGCGTTGATCTGGAGG
TGGGTCTAATCGACTTGCAGTGGTGTGGATGGGGACACGCCGGTGTGGAC
GTGGCTTATGTGATGGCTTGTGCTGTGGACGCAGAGGTGCTTGGTGACGA
TAGCATGGAGACGAAAATTTTGGAGGAATATTATGAAAGATTGGTGAAAT
ATTTGGCATCATTTGAAAAGACGCGTGATGAAGGCAAACACAGAAAGATT
ATGGAGTTTGGGAATTTGAAGCGTGTGTATGAGGAAGCAATAGTTGATTT
GACTCGAGTGGTTGTGGGATATCATTGGGTGAGAATTGCAGCGAGCGTTG
AAGTTTTGGAGGAACGAGCAACGCAGATGGGATCCAATTCGTATAATAAG
AGCGTGGCGTGCGCAAGATGGCTGATTGGGCGGTGTGCGCGTATTTTGGC
GGACAAGTGTTTGCAGGAGGAGGGTCGCGACTGGTTGGGAGGGCTTAACA
CGAAACGCGGCTGA