Gchil2595.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2595.t1
Unique NameGchil2595.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1752281..1753208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72664.XP_006400871.1
PFAMsPeptidase_C48,WRKY
Max annot lvl35493|Streptophyta
KEGG koko:K08597
GOsGO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0019783,GO:0019784,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue6.72e-25
EggNOG OGsCOG2828@1|root,KOG3246@2759|Eukaryota,37SPH@33090|Viridiplantae,3GEC0@35493|Streptophyta,3HX4A@3699|Brassicales
EC3.4.22.68
DescriptionUlp1 protease family protein
COG categoryS
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2595Gchil2595Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1752281..1753208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2595.t1Gchil2595.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1752281..1753208 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2595.t1.stop1Gchil2595.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1752281..1752283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2595.t1.CDS1Gchil2595.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1752281..1752483 -
Gchil2595.t1.CDS2Gchil2595.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1752610..1752912 -
Gchil2595.t1.CDS3Gchil2595.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1752998..1753208 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2595.t1.exon1Gchil2595.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1752281..1752483 -
Gchil2595.t1.exon2Gchil2595.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1752610..1752912 -
Gchil2595.t1.exon3Gchil2595.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1752998..1753208 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2595.t1.intron1Gchil2595.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1752484..1752609 -
Gchil2595.t1.intron2Gchil2595.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1752913..1752997 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2595.t1.start1Gchil2595.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1753206..1753208 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2595.t1 ID=Gchil2595.t1|Name=Gchil2595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=239bp
MAPSQATARIASLGDASLSVDDLALLVPPCWMNDQLISFWCEHLRINVLQ
NDVRVAILPPNLSFFISLTDDYEVLSQIASANNMNNSELIILTVNDSRHA
DVNGNVASGTHWSLLALERRSNVAYYMDSLPLLSNVEVAQVLLHRLSKML
GTSKASFVELNTPRQKNSYDCGAFVCKFAEDVVRCFLSNELISSLYADGA
ELHPDHIDQKRQEIGKLACTLLNEAPEDGPRQRSPEND*
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spliced messenger RNA

>Gchil2595.t1 ID=Gchil2595.t1|Name=Gchil2595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00004400_pilon:1752281..1753208- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCGTCTCAAGCAACTGCCCGCATTGCTTCCCTGGGCGATGCCTC
GCTGTCTGTGGATGATCTTGCACTCCTTGTTCCACCGTGTTGGATGAATG
ATCAACTCATCTCGTTCTGGTGCGAACACCTACGAATCAATGTGCTTCAG
AACGATGTTCGAGTTGCGATTCTACCCCCAAACCTTTCTTTTTTCATATC
ATTGACAGACGATTATGAAGTACTCTCACAAATAGCGTCTGCAAACAATA
TGAATAACAGCGAGCTCATTATTCTCACGGTTAACGACAGTCGACACGCT
GACGTTAATGGAAACGTCGCCAGTGGAACTCATTGGAGCTTGTTGGCCCT
AGAACGTCGTTCAAATGTCGCGTACTACATGGATTCTCTACCTCTTCTCT
CGAACGTGGAAGTGGCCCAAGTTCTTTTGCATCGCCTCTCGAAGATGCTC
GGTACCTCAAAGGCATCCTTTGTTGAGCTCAATACACCACGACAAAAGAA
TAGTTACGATTGCGGTGCATTTGTCTGCAAGTTTGCAGAGGATGTCGTGC
GATGTTTCTTGTCGAATGAACTAATCTCATCTCTGTACGCCGACGGGGCG
GAGCTTCATCCAGATCACATCGACCAAAAACGGCAGGAAATCGGGAAGCT
GGCGTGCACGTTATTAAACGAAGCGCCTGAAGATGGCCCACGACAACGCA
GTCCAGAAAATGACTAG
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protein sequence of Gchil2595.t1

>Gchil2595.t1 ID=Gchil2595.t1|Name=Gchil2595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=239bp
MAPSQATARIASLGDASLSVDDLALLVPPCWMNDQLISFWCEHLRINVLQ
NDVRVAILPPNLSFFISLTDDYEVLSQIASANNMNNSELIILTVNDSRHA
DVNGNVASGTHWSLLALERRSNVAYYMDSLPLLSNVEVAQVLLHRLSKML
GTSKASFVELNTPRQKNSYDCGAFVCKFAEDVVRCFLSNELISSLYADGA
ELHPDHIDQKRQEIGKLACTLLNEAPEDGPRQRSPEND*
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mRNA from alignment at tig00004400_pilon:1752281..1753208-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2595.t1 ID=Gchil2595.t1|Name=Gchil2595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=928bp|location=Sequence derived from alignment at tig00004400_pilon:1752281..1753208- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCCGTCTCAAGCAACTGCCCGCATTGCTTCCCTGGGCGATGCCTC
GCTGTCTGTGGATGATCTTGCACTCCTTGTTCCACCGTGTTGGATGAATG
ATCAACTCATCTCGTTCTGGTGCGAACACCTACGAATCAATGTGCTTCAG
AACGATGTTCGAGTTGCGATTCTACCCCCAAACCTTTCTTTTTTCATATC
ATTGACAGACGGTAAGATCCTCGTCACAAATACCACTCATTGACGTAGCG
TGTGCCAGCAACTAAACCAAAAGCAAACCCTGCTGTGAATCACCAGATTA
TGAAGTACTCTCACAAATAGCGTCTGCAAACAATATGAATAACAGCGAGC
TCATTATTCTCACGGTTAACGACAGTCGACACGCTGACGTTAATGGAAAC
GTCGCCAGTGGAACTCATTGGAGCTTGTTGGCCCTAGAACGTCGTTCAAA
TGTCGCGTACTACATGGATTCTCTACCTCTTCTCTCGAACGTGGAAGTGG
CCCAAGTTCTTTTGCATCGCCTCTCGAAGATGCTCGGTACCTCAAAGGCA
TCCTTTGTTGAGCTCAATACACCACGACAAAAGAATAGTTACGATTGCGG
TACGTCTCTCACTCCTCATCTTCCTTACCAACCTACTGGGTCAAAGTACG
GAACTATCTTTTGGTCGAGGAGATCGATTACTCTAACAGTCATTTTCTTC
CAACCATATCCCTGTCTATCTTTAGGTGCATTTGTCTGCAAGTTTGCAGA
GGATGTCGTGCGATGTTTCTTGTCGAATGAACTAATCTCATCTCTGTACG
CCGACGGGGCGGAGCTTCATCCAGATCACATCGACCAAAAACGGCAGGAA
ATCGGGAAGCTGGCGTGCACGTTATTAAACGAAGCGCCTGAAGATGGCCC
ACGACAACGCAGTCCAGAAAATGACTAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1752281..1753208-

>Gchil2595.t1 ID=Gchil2595.t1|Name=Gchil2595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00004400_pilon:1752281..1753208- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCCGTCTCAAGCAACTGCCCGCATTGCTTCCCTGGGCGATGCCTC
GCTGTCTGTGGATGATCTTGCACTCCTTGTTCCACCGTGTTGGATGAATG
ATCAACTCATCTCGTTCTGGTGCGAACACCTACGAATCAATGTGCTTCAG
AACGATGTTCGAGTTGCGATTCTACCCCCAAACCTTTCTTTTTTCATATC
ATTGACAGACGATTATGAAGTACTCTCACAAATAGCGTCTGCAAACAATA
TGAATAACAGCGAGCTCATTATTCTCACGGTTAACGACAGTCGACACGCT
GACGTTAATGGAAACGTCGCCAGTGGAACTCATTGGAGCTTGTTGGCCCT
AGAACGTCGTTCAAATGTCGCGTACTACATGGATTCTCTACCTCTTCTCT
CGAACGTGGAAGTGGCCCAAGTTCTTTTGCATCGCCTCTCGAAGATGCTC
GGTACCTCAAAGGCATCCTTTGTTGAGCTCAATACACCACGACAAAAGAA
TAGTTACGATTGCGGTGCATTTGTCTGCAAGTTTGCAGAGGATGTCGTGC
GATGTTTCTTGTCGAATGAACTAATCTCATCTCTGTACGCCGACGGGGCG
GAGCTTCATCCAGATCACATCGACCAAAAACGGCAGGAAATCGGGAAGCT
GGCGTGCACGTTATTAAACGAAGCGCCTGAAGATGGCCCACGACAACGCA
GTCCAGAAAATGACTAG
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