Gchil2465.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2465.t1
Unique NameGchil2465.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1222824..1223834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog273371.XP_003867070.1
PFAMsMethyltransf_16
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112,GO:2000765
Evalue5.51e-09
EggNOG OGsKOG2497@1|root,KOG2497@2759|Eukaryota,39S3Q@33154|Opisthokonta,3NXXF@4751|Fungi,3QN5G@4890|Ascomycota,3RTTU@4891|Saccharomycetes,47BCQ@766764|Debaryomycetaceae
DescriptionLysine methyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2465Gchil2465Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1222824..1223834 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2465.t1.start1Gchil2465.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1222824..1222826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2465.t1.CDS1Gchil2465.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1222824..1223834 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2465.t1.exon1Gchil2465.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1222824..1223834 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2465.t1.stop1Gchil2465.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1223832..1223834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2465.t1Gchil2465.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1222824..1223834 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2465.t1 ID=Gchil2465.t1|Name=Gchil2465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=337bp
MLEELQTSSHVPHADLNAATRLFGRAFRAGMPLRQIFDQTQALFGDIAWK
TPLAQKTLLHETVLYQSSLTQRIPGFCFGHSRCARFFRLLMDEVDRCSKG
EVDESFVELAAQHCLLQKSSQRNVHIVHYMPDGQEVVLAVSERFSDLGAR
VWEAGLRLCFQLFDARSALHQDVRGASVLELGAGTGLSGQAYVKAGAKHV
LLTDYKQELIGRIKENLGNNNVPDTVQATLLDANDLPRLRSVVDEFDVDV
IVAADVTYDDDLIEIMVRAFSDSITGPRVGYLLATDRNAKTTCLLRQELL
KTGLTAVEVLFSVADSSCRPLTSSNCNRVSTLKLKR*
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spliced messenger RNA

>Gchil2465.t1 ID=Gchil2465.t1|Name=Gchil2465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00004400_pilon:1222824..1223834+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGAAGAGCTTCAAACTAGCAGTCATGTTCCCCATGCAGATTTGAA
CGCTGCGACTCGTCTGTTTGGAAGAGCATTCAGAGCGGGCATGCCCCTTC
GACAGATCTTCGATCAAACTCAAGCACTGTTTGGTGATATAGCATGGAAA
ACACCACTCGCACAGAAAACTCTGCTGCACGAAACCGTTCTATACCAGAG
CTCCCTGACACAACGCATCCCTGGGTTTTGTTTTGGGCATTCAAGATGCG
CCCGATTTTTCAGACTGCTCATGGATGAAGTAGATCGCTGCAGTAAGGGG
GAAGTCGATGAATCATTTGTTGAACTGGCTGCCCAGCATTGCTTGTTACA
GAAATCTTCGCAACGTAATGTTCACATAGTTCACTACATGCCGGATGGTC
AAGAAGTAGTTCTTGCGGTGTCTGAGCGTTTCAGTGATTTAGGTGCCCGA
GTATGGGAAGCCGGACTTCGTCTATGTTTTCAGCTGTTTGATGCACGTAG
CGCATTACACCAGGATGTGAGAGGAGCATCGGTTCTTGAGCTTGGAGCCG
GTACAGGGTTGTCTGGACAAGCGTACGTGAAAGCTGGTGCGAAGCATGTT
CTACTAACAGACTACAAGCAAGAGCTGATTGGAAGGATCAAAGAGAACCT
TGGAAATAATAATGTTCCGGATACGGTACAGGCCACGTTACTGGATGCAA
ATGACTTGCCTCGGCTGCGAAGCGTAGTTGACGAATTTGACGTAGATGTT
ATTGTAGCTGCGGATGTCACCTATGATGACGATCTTATTGAGATCATGGT
TCGTGCATTTTCTGACTCGATCACTGGACCTCGTGTAGGCTATCTTCTTG
CTACCGATCGAAATGCAAAAACTACCTGTTTGCTTCGACAAGAGCTTTTA
AAGACAGGGTTGACGGCTGTAGAGGTACTTTTCAGCGTTGCAGATAGCTC
TTGCAGACCCTTGACTAGTTCCAACTGCAACAGAGTTTCTACTCTAAAAT
TAAAACGTTGA
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protein sequence of Gchil2465.t1

>Gchil2465.t1 ID=Gchil2465.t1|Name=Gchil2465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=337bp
MLEELQTSSHVPHADLNAATRLFGRAFRAGMPLRQIFDQTQALFGDIAWK
TPLAQKTLLHETVLYQSSLTQRIPGFCFGHSRCARFFRLLMDEVDRCSKG
EVDESFVELAAQHCLLQKSSQRNVHIVHYMPDGQEVVLAVSERFSDLGAR
VWEAGLRLCFQLFDARSALHQDVRGASVLELGAGTGLSGQAYVKAGAKHV
LLTDYKQELIGRIKENLGNNNVPDTVQATLLDANDLPRLRSVVDEFDVDV
IVAADVTYDDDLIEIMVRAFSDSITGPRVGYLLATDRNAKTTCLLRQELL
KTGLTAVEVLFSVADSSCRPLTSSNCNRVSTLKLKR*
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mRNA from alignment at tig00004400_pilon:1222824..1223834+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2465.t1 ID=Gchil2465.t1|Name=Gchil2465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00004400_pilon:1222824..1223834+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGAAGAGCTTCAAACTAGCAGTCATGTTCCCCATGCAGATTTGAA
CGCTGCGACTCGTCTGTTTGGAAGAGCATTCAGAGCGGGCATGCCCCTTC
GACAGATCTTCGATCAAACTCAAGCACTGTTTGGTGATATAGCATGGAAA
ACACCACTCGCACAGAAAACTCTGCTGCACGAAACCGTTCTATACCAGAG
CTCCCTGACACAACGCATCCCTGGGTTTTGTTTTGGGCATTCAAGATGCG
CCCGATTTTTCAGACTGCTCATGGATGAAGTAGATCGCTGCAGTAAGGGG
GAAGTCGATGAATCATTTGTTGAACTGGCTGCCCAGCATTGCTTGTTACA
GAAATCTTCGCAACGTAATGTTCACATAGTTCACTACATGCCGGATGGTC
AAGAAGTAGTTCTTGCGGTGTCTGAGCGTTTCAGTGATTTAGGTGCCCGA
GTATGGGAAGCCGGACTTCGTCTATGTTTTCAGCTGTTTGATGCACGTAG
CGCATTACACCAGGATGTGAGAGGAGCATCGGTTCTTGAGCTTGGAGCCG
GTACAGGGTTGTCTGGACAAGCGTACGTGAAAGCTGGTGCGAAGCATGTT
CTACTAACAGACTACAAGCAAGAGCTGATTGGAAGGATCAAAGAGAACCT
TGGAAATAATAATGTTCCGGATACGGTACAGGCCACGTTACTGGATGCAA
ATGACTTGCCTCGGCTGCGAAGCGTAGTTGACGAATTTGACGTAGATGTT
ATTGTAGCTGCGGATGTCACCTATGATGACGATCTTATTGAGATCATGGT
TCGTGCATTTTCTGACTCGATCACTGGACCTCGTGTAGGCTATCTTCTTG
CTACCGATCGAAATGCAAAAACTACCTGTTTGCTTCGACAAGAGCTTTTA
AAGACAGGGTTGACGGCTGTAGAGGTACTTTTCAGCGTTGCAGATAGCTC
TTGCAGACCCTTGACTAGTTCCAACTGCAACAGAGTTTCTACTCTAAAAT
TAAAACGTTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1222824..1223834+

>Gchil2465.t1 ID=Gchil2465.t1|Name=Gchil2465.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00004400_pilon:1222824..1223834+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGAAGAGCTTCAAACTAGCAGTCATGTTCCCCATGCAGATTTGAA
CGCTGCGACTCGTCTGTTTGGAAGAGCATTCAGAGCGGGCATGCCCCTTC
GACAGATCTTCGATCAAACTCAAGCACTGTTTGGTGATATAGCATGGAAA
ACACCACTCGCACAGAAAACTCTGCTGCACGAAACCGTTCTATACCAGAG
CTCCCTGACACAACGCATCCCTGGGTTTTGTTTTGGGCATTCAAGATGCG
CCCGATTTTTCAGACTGCTCATGGATGAAGTAGATCGCTGCAGTAAGGGG
GAAGTCGATGAATCATTTGTTGAACTGGCTGCCCAGCATTGCTTGTTACA
GAAATCTTCGCAACGTAATGTTCACATAGTTCACTACATGCCGGATGGTC
AAGAAGTAGTTCTTGCGGTGTCTGAGCGTTTCAGTGATTTAGGTGCCCGA
GTATGGGAAGCCGGACTTCGTCTATGTTTTCAGCTGTTTGATGCACGTAG
CGCATTACACCAGGATGTGAGAGGAGCATCGGTTCTTGAGCTTGGAGCCG
GTACAGGGTTGTCTGGACAAGCGTACGTGAAAGCTGGTGCGAAGCATGTT
CTACTAACAGACTACAAGCAAGAGCTGATTGGAAGGATCAAAGAGAACCT
TGGAAATAATAATGTTCCGGATACGGTACAGGCCACGTTACTGGATGCAA
ATGACTTGCCTCGGCTGCGAAGCGTAGTTGACGAATTTGACGTAGATGTT
ATTGTAGCTGCGGATGTCACCTATGATGACGATCTTATTGAGATCATGGT
TCGTGCATTTTCTGACTCGATCACTGGACCTCGTGTAGGCTATCTTCTTG
CTACCGATCGAAATGCAAAAACTACCTGTTTGCTTCGACAAGAGCTTTTA
AAGACAGGGTTGACGGCTGTAGAGGTACTTTTCAGCGTTGCAGATAGCTC
TTGCAGACCCTTGACTAGTTCCAACTGCAACAGAGTTTCTACTCTAAAAT
TAAAACGTTGA
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