Gchil9768.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9768.t1
Unique NameGchil9768.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length325
Homology
BLAST of Gchil9768.t1 vs. uniprot
Match: A0A2V3IEF5_9FLOR (tRNA-intron lyase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEF5_9FLOR)

HSP 1 Score: 219 bits (559), Expect = 4.610e-68
Identity = 113/187 (60.43%), Postives = 132/187 (70.59%), Query Frame = 0
Query:  144 MRQLLQLQ------ATSTDHDRSHVEHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWRVFCSRCQNFPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLHFSDQAQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDTFAAVKVTELTIDRWLP 324
            MRQLL LQ      A      R  VEHLQL LV+AFY AFVT  I+I D        D    WR+FC+RC  FPL+FVAY RYRAAGWLPKS LKYG HWVLYPTK Y HTHAPYCVV HFS++   + + SSW+ALQNRLRL+ NVAK L+IA +H    ++ A+SI+ TF AV++TELTIDRWLP
Sbjct:    1 MRQLLALQPAAAAAAGEAAQSRVDVEHLQLPLVDAFYLAFVTRQIVISD-----AAADAAAAWRLFCARCARFPLLFVAYARYRAAGWLPKSGLKYGVHWVLYPTKRYAHTHAPYCVVFHFSNRPNDARLDSSWIALQNRLRLVNNVAKTLVIARLHVAEPLDLAASISRTFDAVRLTELTIDRWLP 182          
BLAST of Gchil9768.t1 vs. uniprot
Match: A0A7J7IJ30_9RHOD (tRNA-intron lyase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJ30_9RHOD)

HSP 1 Score: 120 bits (301), Expect = 9.240e-29
Identity = 81/230 (35.22%), Postives = 110/230 (47.83%), Query Frame = 0
Query:  100 WICSDAYVAAAWQRT-SCGKANLSRSAPSYNALV--HSQHANWRGRAMRQLLQLQATSTDHDRSHVEHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWRVFCSRCQNFPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYT--HTHAPYCVVLHFSDQAQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDTFAAVKVTELTIDRWLP 324
            W+   A V   WQ     GK NLSRS P Y  L+  H   A+  GRA+R +++     +   R  VEHL L+  EA Y AF    + +        L      W  + S  +     + AY  YR AGW P S  KYGA +VLY  ++    HTHAPY V++  +D+    PI   W+A+QN+LRL K VAK L+   +   T V            V + E+ +DRW P
Sbjct:   13 WVTDPASVQLCWQSLMGFGKGNLSRSRPVYGELLRGHVDQAHL-GRALRNMVRSGYFGSGQGRVDVEHLHLAPYEAAYLAFDEQFLTVAGFENSNAL------WSYYASSSKEHLRQYAAYRAYRLAGWAPHSGCKYGADFVLYRFRATQGRHTHAPYAVIVRETDE----PIHQRWIAVQNQLRLTKQVAKRLVYVEVSMSTAVEDLLDRERWLETVSLHEVLVDRWTP 231          
BLAST of Gchil9768.t1 vs. uniprot
Match: M1VJ94_CYAM1 (tRNA-intron lyase n=2 Tax=cellular organisms TaxID=131567 RepID=M1VJ94_CYAM1)

HSP 1 Score: 112 bits (279), Expect = 1.440e-25
Identity = 77/230 (33.48%), Postives = 108/230 (46.96%), Query Frame = 0
Query:  100 WICSDAYVAAAWQRT-SCGKANLSRSAPSYNALVHS--QHANWRGRAMRQLLQLQATSTDHDRSHVEHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWRVFCSRCQNFPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYT--HTHAPYCVVLHFSDQAQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDTFAAVKVTELTIDRWLP 324
            W+         WQ     GK NLSRS P Y  LV     H +  GRA+R L++    +   D+  VEHL L+  EA Y AF    + +      Q L      W  F S  +     +  Y  YR AGW P S  KYGA +VLY  ++    H+HAPY V++  +++     I   W+A+QN+LRL K VAK L+   +   T + +          V + E+ +DRW P
Sbjct:   13 WVTDPVSARLCWQSLMGFGKGNLSRSRPVYGELVRGAVDHVHL-GRALRSLVRAGHFAARTDKEDVEHLHLAPFEAAYLAFDEQFLTVKGFENTQSL------WTYFVSLPKEHLRQYAVYRAYRHAGWAPHSGCKYGADFVLYRFRASEGRHSHAPYAVLVRSANER----IHQRWIAVQNQLRLTKQVAKRLVYVEVSMSTAMEHLQHRERWLQTVCLHEVLVDRWTP 231          
BLAST of Gchil9768.t1 vs. uniprot
Match: A0A1X6PJ52_PORUM (tRNA-intron lyase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ52_PORUM)

HSP 1 Score: 97.4 bits (241), Expect = 6.460e-19
Identity = 74/226 (32.74%), Postives = 96/226 (42.48%), Query Frame = 0
Query:  140 RGRAMRQLLQLQATSTDH---------DRSHVEHLQLSLVEAFYTAFVTN----HILILDMHTKQPLTDRHHV------------WRVFCSRCQN---FPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLHFSDQ------------AQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDT---FAAVKVTELTIDRW 322
            +GRA+R L  L+  S             R+ VEHL L L EA+Y A+        ++ L         D                W   C+R      F   + AY  YR AGW P+S  KYG  WVLY   +  H HA +CVVL  +              A  +P+ +SWVA+QNRLRL+KNVAK L+   +           + D     A   V EL IDRW
Sbjct:  252 KGRALRNLSSLEGASAAXXXXAVERAAQRTAVEHLALGLPEAYYAAYEAAPPRLRLVTLRGVAAAAAADXXXXXXXXXXXXXXXXWAACCARSPGGVRFAAAYAAYRFYRGAGWAPRSGAKYGVDWVLYKVGAARHAHASFCVVLSVAGLPDGGGSGGGEAGALGAPLDASWVAVQNRLRLVKNVAKTLLYTAVSDGGGALTPGGVADRAAFLARATVVELRIDRW 477          
BLAST of Gchil9768.t1 vs. uniprot
Match: A0A7I8VFI2_9ANNE (tRNA-intron lyase n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VFI2_9ANNE)

HSP 1 Score: 73.2 bits (178), Expect = 1.520e-10
Identity = 46/160 (28.75%), Postives = 85/160 (53.12%), Query Frame = 0
Query:  163 EHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWRVFCSRCQNFPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLHFSDQAQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDTFAAVKVTELTIDRW 322
            E +QL+L EAF+ ++    ++I     K+       +W+ FCS  ++F  ++ AY  +R  GW+ KS +KYGAH++LY     T+ HA + V +  SD+        SW+ L    R+ + V K ++I  + + + ++  + + +    VK+ E+ + RW
Sbjct:  145 EDIQLTLYEAFFLSYALGVLVIKS--EKEEEYSIIELWKKFCSIEEDFIQLYSAYHYFRGKGWIVKSGIKYGAHFLLYKDGP-TYFHASFAVQIFKSDEKL------SWLGLSALNRIQEQVGKEVLICYVTAPSDISNPNCLQN----VKIKEILLKRW 291          
BLAST of Gchil9768.t1 vs. uniprot
Match: A0A7R8ZKY7_9CRUS (Replication termination factor 2 n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZKY7_9CRUS)

HSP 1 Score: 70.5 bits (171), Expect = 9.080e-10
Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = 0
Query:  167 LSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWRVFCSRCQNFPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLHFSDQAQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSE 296
            LS  EAF+ AFV  ++ +    + + L     +WR F  R  NF   + AY RYR  GW+ +  L++G  ++LY      + HA Y V+++  D A +      ++  Q R+RL KNV K L++  +++E
Sbjct:   81 LSAEEAFFLAFVCGYLEVRHRDSSRAL-HLEELWRYFTMRDSNFVFKYAAYHRYRCKGWIVRDGLRFGGDFLLYKDGPSLY-HASYLVIVNPPDDAGR------FLDFQGRMRLAKNVGKQLLLCHVYTE 202          
BLAST of Gchil9768.t1 vs. uniprot
Match: D0N294_PHYIT (tRNA-intron lyase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N294_PHYIT)

HSP 1 Score: 65.5 bits (158), Expect = 1.270e-8
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 0
Query:  167 LSLVEAFYTAFVTNHILILDMHTKQPLTDR-HHVWRVFCSRCQNFPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLHFSDQAQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASS 304
            LSL E +Y A          +H   P+ +    +W  F S    F   F+ Y  +R  GW+PKS L YGAH+VLY   S T  H+ Y V +   D++      SSW  +Q+  R+  +V K +++  + + T V+  SS
Sbjct:   71 LSLPETYYAA----------IHGALPIDEPLRELWERFKSSSVTFARNFIVYQHFRRFGWVPKSGLNYGAHFVLY-RGSATDYHSEYIVYVQDEDES------SSWNTIQSLTRIAADVKKTVLLCTVTTATTVSGDSS 192          
BLAST of Gchil9768.t1 vs. uniprot
Match: A0A5C2SKT8_9APHY (tRNA-splicing endonuclease subunit Sen2 n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2SKT8_9APHY)

HSP 1 Score: 65.9 bits (159), Expect = 2.180e-8
Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 0
Query:  162 VEHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWR-------------VFCSRCQN-FPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLH--FSDQA--QQSPI------ASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDT---FAAVKVTELTIDRWLP 324
            VEHLQL+L EAF+  +  + + +LD HT++P+ D   +W+             V+ +RC N F + + AY  YR+ GW+ K  +K+    +LY      H HA + VV+   + D A  + SP         SW  L    R+   V K LI+  +    Q   ++ +  +    A   V ++ + R++P
Sbjct:  201 VEHLQLTLQEAFFLVWNLDCLTVLDPHTREPM-DLRRIWQSFQEVHCIPVDLPVYANRCDNIFLVNYAAYHYYRSLGWVVKGGIKFCVDLLLYKRGPVFH-HAEFAVVVIPVYEDPADKESSPFNLPNSDTFSWSWLSTINRVNAQVQKTLILTYVTIPAQSRVSADLLSSPACLALYSVRDVVLRRFIP 388          
BLAST of Gchil9768.t1 vs. uniprot
Match: UPI001C7B7424 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7B7424)

HSP 1 Score: 65.9 bits (159), Expect = 2.210e-8
Identity = 61/209 (29.19%), Postives = 96/209 (45.93%), Query Frame = 0
Query:  148 LQLQATSTDHDR-SHVEHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWRVF-----CSRCQNFPLM-----------FVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLH--FSDQAQQ----------SPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDT---FAAVKVTELTIDRWLP 324
            L LQ    D D    +EHLQL+L EAF+ A+  + + I+D H  +PLT    +W  F          N P +           + AY  YR+ GW+ K+ LK+   ++LY  +    THA + VV+   + D A Q          S  A SW+   NR+     V K LI++ +   ++   +S I  +   F+   V E+ + R++P
Sbjct:  188 LPLQMGQEDDDYIEDIEHLQLTLCEAFFLAWNLDCLTIIDPHADEPLT-LEQLWTTFQHINLAPPIPNSPPLRLQLDNPFLVHYAAYHHYRSLGWVVKNGLKFCVDYLLYK-RGPVFTHAEFAVVVCPVYEDPADQENSTVNLQNASAFAWSWLGTVNRVN--SQVMKTLILSYVTIPSRSRVSSDIMTSPACFSKYSVREVVVRRFIP 392          
BLAST of Gchil9768.t1 vs. uniprot
Match: A0A369JPP8_HYPMA (tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JPP8_HYPMA)

HSP 1 Score: 65.1 bits (157), Expect = 3.990e-8
Identity = 56/194 (28.87%), Postives = 91/194 (46.91%), Query Frame = 0
Query:  162 VEHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVWRVF--------CSRCQNFPLMF--------VAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHAPYCVVLH--FSDQAQQ----------SPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVNYASSITDTFAAVK---VTELTIDRWLP 324
            +EHLQL+L EAF+ A+  + + +LD HT   +T +  +W  F             + PL F        V Y  YR+ GW+ K  +K+   ++LY  +    THA + +V+   + D   Q          SP A SW++  NR+     V K LI+  +    +   +  I +T A ++   V E+TI R++P
Sbjct:  205 IEHLQLTLQEAFFLAWSLDCLTVLDPHTNDAMTLKQ-IWHAFQIAHLPPTLPPAPSPPLQFDNPFLINYVVYHHYRSLGWVVKGGIKFCVDYLLYK-RGPVFTHAEFAMVVCPIYEDSEDQETSSLDLQNSSPFAWSWLSTINRVN--SQVQKTLILVYVTIPARSRLSLDILNTPACLQHYSVREVTIRRFIP 394          
The following BLAST results are available for this feature:
BLAST of Gchil9768.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEF5_9FLOR4.610e-6860.43tRNA-intron lyase n=1 Tax=Gracilariopsis chorda Ta... [more]
A0A7J7IJ30_9RHOD9.240e-2935.22tRNA-intron lyase n=1 Tax=Cyanidiococcus yangmings... [more]
M1VJ94_CYAM11.440e-2533.48tRNA-intron lyase n=2 Tax=cellular organisms TaxID... [more]
A0A1X6PJ52_PORUM6.460e-1932.74tRNA-intron lyase n=1 Tax=Porphyra umbilicalis Tax... [more]
A0A7I8VFI2_9ANNE1.520e-1028.75tRNA-intron lyase n=1 Tax=Dimorphilus gyrociliatus... [more]
A0A7R8ZKY7_9CRUS9.080e-1032.31Replication termination factor 2 n=1 Tax=Cyprideis... [more]
D0N294_PHYIT1.270e-832.37tRNA-intron lyase n=2 Tax=Phytophthora infestans T... [more]
A0A5C2SKT8_9APHY2.180e-828.42tRNA-splicing endonuclease subunit Sen2 n=2 Tax=Le... [more]
UPI001C7B74242.210e-829.19uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
A0A369JPP8_HYPMA3.990e-828.87tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Hy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 210..301
e-value: 1.1E-15
score: 57.4
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 207..306
e-value: 6.3E-19
score: 69.8
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 62..324
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 209..302

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004452_piloncontigtig00004452_pilon:84343..85317 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9768.t1Gchil9768.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004452_pilon 84343..85317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9768.t1 ID=Gchil9768.t1|Name=Gchil9768.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=325bp
MDPRPRKRRRPPPRNQPLPLSALSIHSLRLELHRRQLSSAGLRPDLEARL
RQACSTATATATLSVPRSFDVSAPFSTLHHSASSHVPHPIPALLRHRSVW
ICSDAYVAAAWQRTSCGKANLSRSAPSYNALVHSQHANWRGRAMRQLLQL
QATSTDHDRSHVEHLQLSLVEAFYTAFVTNHILILDMHTKQPLTDRHHVW
RVFCSRCQNFPLMFVAYCRYRAAGWLPKSALKYGAHWVLYPTKSYTHTHA
PYCVVLHFSDQAQQSPIASSWVALQNRLRLIKNVAKNLIIACIHSETQVN
YASSITDTFAAVKVTELTIDRWLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf