Gchil902.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil902.t1
Unique NameGchil902.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length215
Homology
BLAST of Gchil902.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 124 bits (312), Expect = 6.450e-32
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 0
Query:    2 ISMSTAIAPRRTNLIDHKDMEHSERMATE--CNVNICFAIDGSGSINRDEFEIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSVARTLSVTSPSSSLDTGIAYCEVELMKQTDANSFIVLLGDFRDNSQGHPVTRAGTFRKFFEPKGRLDTVGVGIFDSILSQRIAGAGGGKAFEI 192
            +S+ TAI P  +N+     ++   RM     CN+N+CFA+DGS S+   ++E+QKD +  + +V+  E   S  F+AVQYG +  PISPLT     F L V  +       SS+  GI YC  +L++  D    I++ GD R+ S+   V+ A +F K F P GRL TVGVG  +++L + IA AGGG+ FEI
Sbjct:   14 VSLVTAI-PFESNMNMRMRLQGVRRMVERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENS-SFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLELADNPVKIIVFGDGRETSKTDAVSIAASF-KDFHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEI 203          
BLAST of Gchil902.t1 vs. uniprot
Match: A0A2V3IPP3_9FLOR (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPP3_9FLOR)

HSP 1 Score: 87.4 bits (215), Expect = 2.000e-17
Identity = 64/186 (34.41%), Postives = 94/186 (50.54%), Query Frame = 0
Query:   30 ECNVNICFAIDGSGSINRDEFEIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSVARTLSVTSPSSSLDTGIAYCEVELMKQTDANSFIVLLGDFRDNSQ--GHPVTRAGTFRKFF-EPKGRLDTVGVGIFDSILSQRIAGAGGGKAFEISSASSSDVFLELSLLIQNAC 212
            +CN+NICFA+DGSG ++  +F++Q D I  V  ++S +     ++AAVQYG R   IS LT D   FLL+V  T+   S  + +  GI+ C  +L +       IV+LGD R   Q  G P       + F  +P   +  VGV   D+ + ++I G    K F +S   S  V   L  L+   C
Sbjct:   56 KCNLNICFAVDGSGYMHGKDFKMQLDFINLVAGIVSLDPTS--RYAAVQYGRRSSVISRLTRDTKSFLLNVKGTVQQCSSRTFVARGISRCARQLRRAKRGAKKIVVLGDGRSRFQTYGPPRDPVSVSQAFLSDPSHGICAVGVNFRDTSMLEQITGDAS-KVFMVSDWES--VLDALDALVVQVC 236          
BLAST of Gchil902.t1 vs. uniprot
Match: A0A2V3ITK9_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITK9_9FLOR)

HSP 1 Score: 86.3 bits (212), Expect = 8.090e-17
Identity = 68/186 (36.56%), Postives = 92/186 (49.46%), Query Frame = 0
Query:   31 CNVNICFAIDGSGSINRDEFEIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSVARTLSVTSPSSSLDTGIAYCEVELMKQTDANSFIVLLGDFRDNSQ-GHPVTRAGTFRK--FFEPKGRLDTVGVGIFDSILSQRIAGAGGGKAFEISS-ASSSDVFLELSLLIQNAC 212
            C+ N+CFA+DGS +IN   F++QKD +  V  VIS +     QFAA+QYG R   IS LT D   FLL V     V    + +  GI  C  +L+K     + IVLLGD  D+    H    A +  K   F P   +  V VG  D+   +RI G    + FE+   A   DV  EL   +++ C
Sbjct:   81 CDPNVCFALDGSRTINSTNFQLQKDFVKLVAGVISLDEQS--QFAALQYGLRSDVISDLTLDAEDFLLKVDGAKKVGYRRTFVAFGIFGCIQQLLKTPFEANHIVLLGDGDDDILVRHSGFNAESVAKRFLFSPHNAISAVAVGFSDTSHLERIVG-NPNRVFEVDEWAEVVDVTAEL---VEDVC 260          
BLAST of Gchil902.t1 vs. uniprot
Match: A0A2V3ISI4_9FLOR (VWFA domain-containing protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI4_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 4.560e-16
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 0
Query:   28 ATECNVNICFAIDGSGSINRDEFEIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSVARTLSVTSPSSSLDTGIAYCEVELM----KQTDAN--SFIVLLGDFRDNSQGHPVTRAGTFRKFFEPKGRLDTVGVGI----FDSILSQRIAGAGGG 187
            A  C  ++CFA+D SGS+ + +F   +D ILD+ +++   N    +FAA QYG R   I+ +T D + F   V  +       +S+ +GI +C  +L     K  DAN  + +V++GD R+   G P+ RA  FR+  +  G + TV +G      + ILS+ +AG  GG
Sbjct:   40 ARGCLAHVCFALDTSGSVTKQQFFYGRDFILDITAILG--NDRRTKFAAGQYGRRTYKIASMTGDVATFNTEVGFSPYRHDSQTSVGSGIVFCHSQLRRARKKAADANIVNKMVVIGDGRNTLGGDPIRRANNFRR--KVGGEISTVSIGYPGKEGERILSE-VAGENGG 204          
BLAST of Gchil902.t1 vs. uniprot
Match: R7Q5C2_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5C2_CHOCR)

HSP 1 Score: 80.5 bits (197), Expect = 1.010e-14
Identity = 56/185 (30.27%), Postives = 101/185 (54.59%), Query Frame = 0
Query:   31 CNVNICFAIDGSGSINRDEFEIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSVARTLSVTSPSSSLDTGIAYCEVELMKQTDANSF-IVLLGDFRDNSQGHPVTRAGTFRKFFEPKGRLDTVGVGIFDSILSQRIAGAGGGKAFEISSASS-SDVFLELSLLIQNACS 213
            C++++CFA+DGSGSI+ +E+++QKDL+  +  + +  NA    F+AVQYG     IS  T+D   F+  V  ++ + +P + L  G+ +C  ++ +   A    +V+LGD RDN          +     +    +D   VGI +S+ +Q++    GG+   + +AS+ +DV   +  L++  CS
Sbjct:   78 CDISLCFALDGSGSISAEEYQVQKDLVKLIAILAAPANAT---FSAVQYGLANEFISVSTSDPFAFMKYVDNSVLLRAPRTFLTAGLGFCISQVNENPKAGGKKVVVLGDGRDNYM------ESSLALVLKSAESVDIFAVGIGNSLDTQKLLEITGGQKNHVYTASNYADVGQVVVDLVRALCS 253          
BLAST of Gchil902.t1 vs. uniprot
Match: A0A2V3IBU0_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBU0_9FLOR)

HSP 1 Score: 75.9 bits (185), Expect = 6.800e-13
Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 0
Query:   28 ATECNVNICFAIDGSGSINRDEFEIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSVARTLSVTSPSSSLDTGIAYCEVELMKQ----TDAN--SFIVLLGDFRDNSQGHPVTRAGTFRKFFEPKGRLDTVGVGI----FDSILSQRIAGAGGG 187
            A  C  ++CFA+D SGS+ + +F   +D ILD+ +++   N    +FAA QYG R   I+ +T D + F   V  +       +S+ +GI +C  +L +      DAN  + +V++GD R+     P+ RA  FR+  +  G + TV +G      + ILS+ +AG  GG
Sbjct:   94 ARGCLAHVCFALDTSGSVTKQQFSKGRDFILDITAILG--NDRRTKFAAGQYGRRTYKIASMTGDVATFNTEVGFSPYRHDSQTSVGSGIVFCHSQLRRARKNAADANIVNKMVVIGDGRNTFD--PIRRANNFRR--KVGGEISTVSIGYPGKEGERILSE-VAGETGG 256          
BLAST of Gchil902.t1 vs. uniprot
Match: R7Q3A9_CHOCR (VWFA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3A9_CHOCR)

HSP 1 Score: 68.2 bits (165), Expect = 2.690e-10
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0
Query:   31 CNVNICFAIDGSGSINRDEFEIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSVARTLSVTSPSSSLDTGIAYCEVELMKQTDANSF-IVLLGDFRDN 143
            CN+ +CFA+DGSGSI+  +F++Q+DL+  + SV      G   F+AVQYG     IS  T +   F  +V  ++   +P + + +G+ +C   L  +       I+LLGD R N
Sbjct:   65 CNMRLCFALDGSGSISPVQFKVQQDLVKLLASVA---REGGATFSAVQYGLSNTAISTPTGNAPKFRRAVDDSIFQRAPRTFIGSGLGFCISNLKTEPRGRGRRILLLGDGRSN 175          
The following BLAST results are available for this feature:
BLAST of Gchil902.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3ID60_9FLOR6.450e-3239.90Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
A0A2V3IPP3_9FLOR2.000e-1734.41Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3ITK9_9FLOR8.090e-1736.56VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ISI4_9FLOR4.560e-1633.53VWFA domain-containing protein n=3 Tax=Gracilariop... [more]
R7Q5C2_CHOCR1.010e-1430.27VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A2V3IBU0_9FLOR6.800e-1332.35VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q3A9_CHOCR2.690e-1035.09VWFA domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 32..208
e-value: 2.6E-8
score: 43.6
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 34..194
e-value: 7.3E-11
score: 42.6
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 34..211
score: 10.886843
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 29..204
e-value: 1.2E-16
score: 63.1
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 30..197
NoneNo IPR availableCDDcd00198vWFAcoord: 33..190
e-value: 1.0592E-9
score: 53.3386

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:1156235..1156879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil902.t1Gchil902.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000017_pilon 1156235..1156879 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil902.t1 ID=Gchil902.t1|Name=Gchil902.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=215bp
MISMSTAIAPRRTNLIDHKDMEHSERMATECNVNICFAIDGSGSINRDEF
EIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSV
ARTLSVTSPSSSLDTGIAYCEVELMKQTDANSFIVLLGDFRDNSQGHPVT
RAGTFRKFFEPKGRLDTVGVGIFDSILSQRIAGAGGGKAFEISSASSSDV
FLELSLLIQNACSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf