Gchil902.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil902.t1
Unique NameGchil902.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:1156235..1156879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil902Gchil902Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 1156235..1156879 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil902.t1.stop1Gchil902.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 1156235..1156237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil902.t1.CDS1Gchil902.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1156235..1156879 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil902.t1.exon1Gchil902.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1156235..1156879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil902.t1.start1Gchil902.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 1156877..1156879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil902.t1Gchil902.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 1156235..1156879 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil902.t1 ID=Gchil902.t1|Name=Gchil902.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=215bp
MISMSTAIAPRRTNLIDHKDMEHSERMATECNVNICFAIDGSGSINRDEF
EIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSV
ARTLSVTSPSSSLDTGIAYCEVELMKQTDANSFIVLLGDFRDNSQGHPVT
RAGTFRKFFEPKGRLDTVGVGIFDSILSQRIAGAGGGKAFEISSASSSDV
FLELSLLIQNACSR*
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spliced messenger RNA

>Gchil902.t1 ID=Gchil902.t1|Name=Gchil902.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000017_pilon:1156235..1156879- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCTATGTCTACGGCCATCGCTCCGCGTCGCACAAACTTGATCGA
TCACAAAGATATGGAACACAGCGAACGGATGGCTACTGAGTGCAATGTGA
ACATATGTTTTGCAATTGATGGGAGTGGTTCCATCAATCGCGATGAATTT
GAAATTCAGAAGGACCTCATCTTGGATGTGGTTTCCGTTATTTCGACGGA
GAATGCAGGGAGCCTACAGTTTGCAGCAGTTCAATACGGCACACGTCCAA
TTCCCATATCTCCTCTCACCACAGACTTTAGCGGTTTCTTGTTAAGTGTC
GCAAGAACACTCTCTGTCACCTCGCCAAGCTCGTCTCTGGACACAGGCAT
TGCGTACTGTGAAGTAGAATTAATGAAGCAAACTGATGCGAATTCATTCA
TTGTTTTACTGGGAGATTTCCGCGACAATTCTCAGGGACATCCTGTAACG
CGTGCCGGCACGTTTAGGAAGTTCTTCGAGCCTAAAGGTAGGCTGGACAC
TGTGGGTGTAGGAATTTTTGACTCGATCTTATCACAGAGAATTGCAGGTG
CGGGAGGCGGCAAAGCCTTTGAAATCAGCTCCGCTAGCTCCTCTGATGTG
TTTCTGGAGCTCTCTCTCTTGATCCAGAACGCGTGCAGCCGTTGA
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protein sequence of Gchil902.t1

>Gchil902.t1 ID=Gchil902.t1|Name=Gchil902.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=215bp
MISMSTAIAPRRTNLIDHKDMEHSERMATECNVNICFAIDGSGSINRDEF
EIQKDLILDVVSVISTENAGSLQFAAVQYGTRPIPISPLTTDFSGFLLSV
ARTLSVTSPSSSLDTGIAYCEVELMKQTDANSFIVLLGDFRDNSQGHPVT
RAGTFRKFFEPKGRLDTVGVGIFDSILSQRIAGAGGGKAFEISSASSSDV
FLELSLLIQNACSR*
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mRNA from alignment at tig00000017_pilon:1156235..1156879-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil902.t1 ID=Gchil902.t1|Name=Gchil902.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000017_pilon:1156235..1156879- (Gracilaria chilensis NLEC103_M9 male)
ATGATTTCTATGTCTACGGCCATCGCTCCGCGTCGCACAAACTTGATCGA
TCACAAAGATATGGAACACAGCGAACGGATGGCTACTGAGTGCAATGTGA
ACATATGTTTTGCAATTGATGGGAGTGGTTCCATCAATCGCGATGAATTT
GAAATTCAGAAGGACCTCATCTTGGATGTGGTTTCCGTTATTTCGACGGA
GAATGCAGGGAGCCTACAGTTTGCAGCAGTTCAATACGGCACACGTCCAA
TTCCCATATCTCCTCTCACCACAGACTTTAGCGGTTTCTTGTTAAGTGTC
GCAAGAACACTCTCTGTCACCTCGCCAAGCTCGTCTCTGGACACAGGCAT
TGCGTACTGTGAAGTAGAATTAATGAAGCAAACTGATGCGAATTCATTCA
TTGTTTTACTGGGAGATTTCCGCGACAATTCTCAGGGACATCCTGTAACG
CGTGCCGGCACGTTTAGGAAGTTCTTCGAGCCTAAAGGTAGGCTGGACAC
TGTGGGTGTAGGAATTTTTGACTCGATCTTATCACAGAGAATTGCAGGTG
CGGGAGGCGGCAAAGCCTTTGAAATCAGCTCCGCTAGCTCCTCTGATGTG
TTTCTGGAGCTCTCTCTCTTGATCCAGAACGCGTGCAGCCGTTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:1156235..1156879-

>Gchil902.t1 ID=Gchil902.t1|Name=Gchil902.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000017_pilon:1156235..1156879- (Gracilaria chilensis NLEC103_M9 male)
ATGATTTCTATGTCTACGGCCATCGCTCCGCGTCGCACAAACTTGATCGA
TCACAAAGATATGGAACACAGCGAACGGATGGCTACTGAGTGCAATGTGA
ACATATGTTTTGCAATTGATGGGAGTGGTTCCATCAATCGCGATGAATTT
GAAATTCAGAAGGACCTCATCTTGGATGTGGTTTCCGTTATTTCGACGGA
GAATGCAGGGAGCCTACAGTTTGCAGCAGTTCAATACGGCACACGTCCAA
TTCCCATATCTCCTCTCACCACAGACTTTAGCGGTTTCTTGTTAAGTGTC
GCAAGAACACTCTCTGTCACCTCGCCAAGCTCGTCTCTGGACACAGGCAT
TGCGTACTGTGAAGTAGAATTAATGAAGCAAACTGATGCGAATTCATTCA
TTGTTTTACTGGGAGATTTCCGCGACAATTCTCAGGGACATCCTGTAACG
CGTGCCGGCACGTTTAGGAAGTTCTTCGAGCCTAAAGGTAGGCTGGACAC
TGTGGGTGTAGGAATTTTTGACTCGATCTTATCACAGAGAATTGCAGGTG
CGGGAGGCGGCAAAGCCTTTGAAATCAGCTCCGCTAGCTCCTCTGATGTG
TTTCTGGAGCTCTCTCTCTTGATCCAGAACGCGTGCAGCCGTTGA
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