Gchil8968.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8968.t1
Unique NameGchil8968.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length131
Homology
BLAST of Gchil8968.t1 vs. uniprot
Match: A0A2V3IC83_9FLOR (Cysteine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC83_9FLOR)

HSP 1 Score: 132 bits (332), Expect = 1.050e-33
Identity = 70/136 (51.47%), Postives = 95/136 (69.85%), Query Frame = 0
Query:    1 MHPACRDAVRLEKALTSAEDEVDEALADDFDTPRVMGILSSLMKNANACLNEDDSAKSGAVAMVYDSSQRYVQRVLGDFGLCFDR------DEAQVGISEDEDGVGEVIDMLLRFRADVRSGAREKNMEKVFGACD 130
            MHPAC  A +LE +L + ED +DEA+ADDFDT RVMG++S L+  AN  LNEDDS KSGA A+V+D +Q YV+R L D GL  +R      ++AQ G   D +   +V+++L+ FR  VR GAREK++++VF ACD
Sbjct:  386 MHPACEHATQLEHSLRTMEDGIDEAIADDFDTSRVMGMISELVTRANKSLNEDDSPKSGAAAVVHDMTQDYVRRTLSDLGLDVERFGKKRTEDAQSG---DAERFKDVMELLVSFRRSVRHGAREKDLKQVFAACD 518          
BLAST of Gchil8968.t1 vs. uniprot
Match: UPI00083C3EC0 (cysteine--tRNA ligase, mitochondrial n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C3EC0)

HSP 1 Score: 57.0 bits (136), Expect = 6.790e-7
Identity = 33/119 (27.73%), Postives = 61/119 (51.26%), Query Frame = 0
Query:   15 LTSAEDEVDEALADDFDTPRVMGILSSLMKNANACLN---EDDSAKSGAVAMVYDSSQRYVQRVLGDFGLCFDRDEAQVGISEDEDGVGEVIDMLLRFRADVRSGAREKNMEKVFGACD 130
            L     EV++AL DDFDT   +  +++LM + N  ++    D S   G++ ++  +   +V + L  FGL  ++       SE +     ++D+L++FR ++R        ++VFG CD
Sbjct:  367 LGKTNQEVEDALKDDFDTASCVKSINNLMSSTNKMIHTAASDSSGNDGSIGLM--AITNFVGKTLNSFGLNLNKVN-----SESDKDFDRIVDLLVQFRGELRQIGASSKSKEVFGLCD 478          
BLAST of Gchil8968.t1 vs. uniprot
Match: UPI0007384951 (probable cysteine--tRNA ligase, mitochondrial isoform X1 n=2 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007384951)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-6
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 0
Query:   15 LTSAEDEVDEALADDFDTPRVMGILSSLMKNANACLN---EDDSAKSGAVAMVYDSSQRYVQRVLGDFGLCFDRDEAQVGISEDEDGVGEVIDMLLRFRADVRSGAREKNME--KVFGACD 130
            L   ++ + EAL +DF TP+V+  LS L++  N  LN   +         A    ++  YV+RVL D G+C   +  Q G S+ +     V+D  ++FR  VR+ A E  ++  ++ GACD
Sbjct:  399 LRQVQENILEALRNDFGTPQVVDELSELVRVVNKGLNSPIQGSECFEVRDAPCIAAAAIYVERVLRDLGICMGEESLQAGESDGK--FRNVVDDFVKFRTIVRNKALEMRVKDKELLGACD 517          
BLAST of Gchil8968.t1 vs. uniprot
Match: A0A673J2I2_9TELE (Cysteine--tRNA ligase n=20 Tax=Cyprinidae TaxID=7953 RepID=A0A673J2I2_9TELE)

HSP 1 Score: 54.3 bits (129), Expect = 6.030e-6
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 0
Query:   15 LTSAEDEVDEALADDFDTPRVMGILSSLMKNANACLNEDDSAKSGAVAMVYDSSQRYVQRVLGDFGL-CFDRDEAQVGISEDEDGV-GEVIDMLLRFRADVRSGA 117
            L++ +  V +ALADDFDTP+ +G + SL+ + N  L             V+ +   YV+ +LG FG+   DR E       D  GV   V++ L+ FR+ VR  A
Sbjct:  397 LSATQSSVRKALADDFDTPKAVGAIMSLIHHGNCQLQPATKVDGPRCPAVFGAMLSYVREILGVFGVDLLDRKEVH-----DSSGVLNNVVEELVHFRSKVRKFA 496          
BLAST of Gchil8968.t1 vs. uniprot
Match: A0A673IZI4_9TELE (Cysteine--tRNA ligase n=8 Tax=Cyprininae TaxID=2743694 RepID=A0A673IZI4_9TELE)

HSP 1 Score: 54.3 bits (129), Expect = 6.030e-6
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 0
Query:   15 LTSAEDEVDEALADDFDTPRVMGILSSLMKNANACLNEDDSAKSGAVAMVYDSSQRYVQRVLGDFGL-CFDRDEAQVGISEDEDGV-GEVIDMLLRFRADVRSGA 117
            L++ +  V +ALADDFDTP+ +G + SL+ + N  L             V+ +   YV+ +LG FG+   DR E       D  GV   V++ L+ FR+ VR  A
Sbjct:  399 LSATQSSVRKALADDFDTPKAVGAIMSLIHHGNCQLQPATKVDGPRCPAVFGAMLSYVREILGVFGVDLLDRKEVH-----DSSGVLNNVVEELVHFRSKVRKFA 498          
The following BLAST results are available for this feature:
BLAST of Gchil8968.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IC83_9FLOR1.050e-3351.47Cysteine--tRNA ligase n=1 Tax=Gracilariopsis chord... [more]
UPI00083C3EC06.790e-727.73cysteine--tRNA ligase, mitochondrial n=1 Tax=Nicro... [more]
UPI00073849511.280e-632.23probable cysteine--tRNA ligase, mitochondrial isof... [more]
A0A673J2I2_9TELE6.030e-634.29Cysteine--tRNA ligase n=20 Tax=Cyprinidae TaxID=79... [more]
A0A673IZI4_9TELE6.030e-634.29Cysteine--tRNA ligase n=8 Tax=Cyprininae TaxID=274... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..28
NoneNo IPR availableGENE3D1.20.120.1910coord: 5..130
e-value: 1.5E-8
score: 36.8
NoneNo IPR availablePANTHERPTHR10890:SF27CYSTEINE--TRNA LIGASE, MITOCHONDRIAL-RELATEDcoord: 10..130
IPR015273Cysteinyl-tRNA synthetase, class Ia, DALRPFAMPF09190DALR_2coord: 22..77
e-value: 6.2E-5
score: 23.4
IPR024909Cysteinyl-tRNA synthetase/mycothiol ligasePANTHERPTHR10890CYSTEINYL-TRNA SYNTHETASEcoord: 10..130
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingSUPERFAMILY47323Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasescoord: 12..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:510734..511126 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8968.t1Gchil8968.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 510734..511126 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8968.t1 ID=Gchil8968.t1|Name=Gchil8968.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=131bp
MHPACRDAVRLEKALTSAEDEVDEALADDFDTPRVMGILSSLMKNANACL
NEDDSAKSGAVAMVYDSSQRYVQRVLGDFGLCFDRDEAQVGISEDEDGVG
EVIDMLLRFRADVRSGAREKNMEKVFGACD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015273Cys-tRNA-synt_Ia_DALR
IPR024909Cys-tRNA/MSH_ligase
IPR009080tRNAsynth_Ia_anticodon-bd