Gchil8919.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8919.t1
Unique NameGchil8919.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Homology
BLAST of Gchil8919.t1 vs. uniprot
Match: A0A2V3IJX3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJX3_9FLOR)

HSP 1 Score: 273 bits (697), Expect = 8.000e-90
Identity = 137/227 (60.35%), Postives = 174/227 (76.65%), Query Frame = 0
Query:    1 MAKHERNRAIRIYHGFVSILLLLGGGALLGLGIWLEVSENSTPLGLDYNQDSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAIVIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDKDVVCRIEDRLECRGFFDNQCINCITGLEDNCVEEVACASCSTEATGLPGCYNKISRLVNRIFLPVAIVAAVLALLLIVDFLLTCCL 227
            MAKHERNRA+RIYHGFV++LLLLGGGALLG+GIWL V++N  P+GLDYN DS+FD+V+H G+A+MIAG FL+L  + S+I+L R C+GVTFRVIY++M +VI IVLVG  V+S+++V  KDD   ++ L++AW  TV+RD DV+CRIE  LECRGF DN C+ C + L+D C E   CA CS       GCY+ I R  NRIFLP AIVAAVLAL+ +VD  +TC L
Sbjct:    1 MAKHERNRAVRIYHGFVALLLLLGGGALLGVGIWLHVTDNGGPVGLDYNNDSFFDLVIHVGIAAMIAGSFLILTGIVSLITLVRNCLGVTFRVIYVLMGLVIFIVLVGATVVSSIIVHNKDDLSVRDTLRSAWVHTVSRDPDVICRIERNLECRGFLDNDCVRCTSVLDDGCAEATTCAKCSDTRDPSFGCYSNIIRDFNRIFLPSAIVAAVLALIQLVDVFVTCAL 227          
BLAST of Gchil8919.t1 vs. uniprot
Match: R7Q7Y1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Y1_CHOCR)

HSP 1 Score: 170 bits (430), Expect = 1.270e-49
Identity = 87/208 (41.83%), Postives = 143/208 (68.75%), Query Frame = 0
Query:   21 LLLGGGALLGLGIWLEVSENSTPLGLDYNQDSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAIVIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDKDVVCRIEDRLECRGFFDNQCINC-ITGLEDNCVEEVACASCSTEATGLPGCYNKISRLVNRIFLPVAIVAAVLALLLIVDFLLTCCL 227
            +L+ GG L+G GIWL+V++N+ P  L YN D+++  V++ G+A MI G FL++AA++S+I+LSRKC+G  F+V+Y++MA++I +VLV    +SA++  R + E T++ L+ AW++TV  D D +CR+E+  +CRGF D++C  C + G   +C     CA C  +     GCY++I   V+  FLPVAI+  +L++++I+D  +TC L
Sbjct:    1 MLVAGGVLVGTGIWLQVTDNAGPHDLVYNDDTFWKFVLNFGVAGMIVGVFLIVAAISSLIALSRKCVGSCFKVVYVVMALLILVVLVFITALSAVIRARGNTEVTRDFLEDAWQSTVTADPDQICRLEEFYKCRGFNDSECKECSVPGDVTDCSPTANCARCGVDTFAGVGCYDEIVASVSNFFLPVAIIGGILSVVIIIDIFMTCAL 208          
BLAST of Gchil8919.t1 vs. uniprot
Match: A0A1X6NMC2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NMC2_PORUM)

HSP 1 Score: 116 bits (290), Expect = 2.520e-28
Identity = 72/223 (32.29%), Postives = 116/223 (52.02%), Query Frame = 0
Query:   13 YHGFVSILLLLGGGALLGLGIWLEVSENSTPLGLDYNQDSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAIVIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDK-DVV---CRIEDRLECRGFFDNQCINCITGLED-----NCVEEVACASCSTEAT-GLPGCYNKISRLVNRIFLPVAIVAAVLALLLIVDFLLTC 225
            +H F   LLLLGG   LG+GIWL+ +    P+ L++    + D  +  G+A+M+ GG LL+ A+ ++ ++SR C+G   RV++++  ++    LV   V++ L+   +  +  ++ ++ +WE TV   + DVV   C ++    C GF    C++C  G  D     N      C  C T       GCY KI      IFLPV IVA+VLA + ++D    C
Sbjct:   12 FHSFFLFLLLLGGAGFLGVGIWLQSAHGGGPVNLEWTGSGFIDGFLTLGVAAMVIGGALLVTAVFALCAVSRSCVGTVARVLFVLATLLATAALVLLAVVTLLIASDRRPDAVQDFVRDSWERTVTSGEVDVVSEACEVQTEFGCVGFVAGDCVDCPNGRADGGGECNGAPARRCPVCPTAPPPSAGGCYEKIIERTRDIFLPVGIVASVLAAIALIDVFAVC 234          
BLAST of Gchil8919.t1 vs. uniprot
Match: M2XT95_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XT95_GALSU)

HSP 1 Score: 78.6 bits (192), Expect = 3.600e-14
Identity = 56/225 (24.89%), Postives = 105/225 (46.67%), Query Frame = 0
Query:    2 AKHERNRAIRIYHGFVSILLLLGGGALLGLGIWLEVSENSTPLGLDYNQDSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAIVIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDKDVVCRIEDRLECRGFFDNQCINCITGLEDNCVEEVACASCSTEATGLPGCYNKISRLVNRIFLPVAIVAAVLALLLIVDFLLTCC 226
            ++   N  +  YHG +S L  LGG AL+G+GI+ EV+  S    L++  D ++ V+ + G+A ++ G  + L       +  R C G  F            +VL+ T +++ ++ +  +    K+   +AW+ T + D   +C+I++   C GF              +C      ++C    T    CY  I    ++ +LP+ +V+ +L  L ++D L+ CC
Sbjct:   10 SRSSGNTFVLFYHGTISALYFLGGLALVGVGIYAEVTH-SGKFDLEWTND-FWKVISNFGIAGIVVGAVIALVGAFGFFAFGRGCCGKFFXXXXXXXXXXXFLVLLFTAIVTLMLANGDNVSPFKSAACSAWKQTASDDPQEICKIQNEYSCCGF------------SSSCDPTTTISTCPCVTTN--HCYETIIHKYHKWYLPIGVVSCILGALTLIDSLVVCC 218          
BLAST of Gchil8919.t1 vs. uniprot
Match: A0A1X6P2U2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2U2_PORUM)

HSP 1 Score: 75.9 bits (185), Expect = 5.200e-13
Identity = 70/220 (31.82%), Postives = 101/220 (45.91%), Query Frame = 0
Query:   12 IYHGFVSILLLLGGGALLGLGIWLEVSENSTPLGLDYNQDSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAIVIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDKDVVCRIEDRLECRGFFDNQCINCIT--GLEDNCVEEVA--CASC--STEATGLPGCYNKISRLVNRIFLPVAIVAAVLALLLIVDFLLTC 225
            I H   S L+L     L  +G++  V  N   L L Y+  S+F   V  G+  M+ G  L L  +A  + LS + I V F ++++ +  +  ++ +   V S LV               AW  TV      VC IE  L CRG+ ++QC+ C     +   C    A  CA C   +EA G  GC  ++  LV R F P+ I+AAVLA LL +   L C
Sbjct:   22 ILHAVFSALILALALGLAAVGVYNVVKVNGPVLPLTYDGPSFFASAVRLGILGMVLGVGLALLYVAVAVVLSSRRIPVVFAILFVTLQFIAFVLALFLAVSSLLVAAVPLRSAVDAYFSDAWTQTVAASPGDVCGIEAALGCRGYANDQCVECSPDEAVAGACTITDARFCAPCVGGSEAQGR-GCRREVEVLVRRWFEPMGILAAVLAGLLFIHMFLLC 240          
The following BLAST results are available for this feature:
BLAST of Gchil8919.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IJX3_9FLOR8.000e-9060.35Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q7Y1_CHOCR1.270e-4941.83Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NMC2_PORUM2.520e-2832.29Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2XT95_GALSU3.600e-1424.89Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A1X6P2U2_PORUM5.200e-1331.82Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspanincoord: 12..227
e-value: 1.1E-11
score: 44.9
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 224..227
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 118..201
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 202..223
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..82
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 83..93
NoneNo IPR availableTMHMMTMhelixcoord: 202..224
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:115474..116157 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8919.t1Gchil8919.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 115474..116157 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8919.t1 ID=Gchil8919.t1|Name=Gchil8919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MAKHERNRAIRIYHGFVSILLLLGGGALLGLGIWLEVSENSTPLGLDYNQ
DSYFDVVVHTGLASMIAGGFLLLAALASIISLSRKCIGVTFRVIYIIMAI
VIAIVLVGTCVISALVVDRKDDEGTKNILQAAWEATVNRDKDVVCRIEDR
LECRGFFDNQCINCITGLEDNCVEEVACASCSTEATGLPGCYNKISRLVN
RIFLPVAIVAAVLALLLIVDFLLTCCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018499Tetraspanin/Peripherin