Gchil8272.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8272.t1
Unique NameGchil8272.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length123
Homology
[Close]
BLAST of Gchil8272.t1 vs. uniprot
Match: A0A2V3INE7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INE7_9FLOR)

HSP 1 Score: 101 bits (251), Expect = 2.750e-25
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 0 
Query:    1 MSSIQEGLQAITQEPTNQPIITRFFRFAAALAFFPLLAFFLVRRLIAYFHLPDTALFSAPILGGLVAVLTVNIIISTFALLALTEPSQAAESVS 94
            MSS+QEG++A+ +EPTN+PII +FFRFAAALA  P++ +FLV  L+ + +L  + + SAPILGGL A+LT+NI+ S FALLAL E S +    S
Sbjct:    1 MSSMQEGIEALAREPTNKPIIAKFFRFAAALAILPVIFYFLVYNLVRFLNLNQSGILSAPILGGLAAILTINIVTSLFALLALRERSHSEPGAS 94
The following BLAST results are available for this feature:
BLAST of Gchil8272.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INE7_9FLOR2.750e-2555.32Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019013Vacuolar ATPase assembly integral membrane protein Vma21PFAMPF09446VMA21coord: 20..82
e-value: 4.4E-7
score: 29.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..122
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..122
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 43..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availableTMHMMTMhelixcoord: 24..46
NoneNo IPR availableTMHMMTMhelixcoord: 61..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:986484..986852 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8272.t1Gchil8272.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 986484..986852 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8272.t1 ID=Gchil8272.t1|Name=Gchil8272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=123bp
MSSIQEGLQAITQEPTNQPIITRFFRFAAALAFFPLLAFFLVRRLIAYFH
LPDTALFSAPILGGLVAVLTVNIIISTFALLALTEPSQAAESVSISPQPQ
QQSQLQQSEQHLQASQTREKTE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019013Vma21