Gchil8252.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8252.t1
Unique NameGchil8252.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Homology
BLAST of Gchil8252.t1 vs. uniprot
Match: A0A2V3IQK2_9FLOR (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQK2_9FLOR)

HSP 1 Score: 367 bits (942), Expect = 7.790e-121
Identity = 189/235 (80.43%), Postives = 207/235 (88.09%), Query Frame = 0
Query:    1 MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVVLRRCGLAERARLLSEAKEVAP--------TSARKPLSKVPGMDVETLSISVKNFYALLFGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQDPANEYGNDAIAAVGIRDPEKVKLILTN 227
            MTRLDEIM TLDASLVPE+AR  QI+AVLEVILNPLQSLC+SMASR LS VERQVF+ANCID MRMPLMAYSFASSRVEQLTS+AD HIDNYIQL T++VLRRCGLAERAR+L+EAK+ A         TS RKPLS++PGMDVE LSISVKNFYALLF GS++GSSEVL+PPHV+KITNVRWRNRARAAVAE LA TH+EI KALQD  NEYG DAIA VG+RDPEKVKLILTN
Sbjct:  434 MTRLDEIMVTLDASLVPEDARHDQIAAVLEVILNPLQSLCESMASRNLSPVERQVFMANCIDSMRMPLMAYSFASSRVEQLTSIADNHIDNYIQLGTVIVLRRCGLAERARILAEAKQTAALTSSQGTETSKRKPLSRIPGMDVEALSISVKNFYALLFSGSTVGSSEVLKPPHVNKITNVRWRNRARAAVAESLAATHTEIFKALQDSTNEYGEDAIATVGMRDPEKVKLILTN 668          
BLAST of Gchil8252.t1 vs. uniprot
Match: R7QBZ7_CHOCR (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBZ7_CHOCR)

HSP 1 Score: 336 bits (862), Expect = 7.710e-110
Identity = 173/247 (70.04%), Postives = 208/247 (84.21%), Query Frame = 0
Query:    1 MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVVLRRCGLAERARLLSEAKEVAPTSARK--------------PLSKVPGMDVETLSISVKNFYALLFGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQDPANEYGNDAIAAVGIRDPEKVKLILTNCAVDTR 233
            MTRLDEIMATLDASL PE+ARQ QISAVLEVILNPLQ+LC+SM++++L+A+E+ VF+ANCID MRMPLMAYSFA+SRVEQLT  AD HID+YI+LS+++VLRRCGLA+RAR+LSEAK+ A  + R               PLSKV GMD E LSISVKNFYA+LFGGS+IGSSE LQPPHVS ITNVR RNRARAAVAE LA TH+EI+ A+QDPAN+YG DA++AVG+RDP+KV+LIL+N  + +R
Sbjct:  342 MTRLDEIMATLDASLTPEDARQGQISAVLEVILNPLQALCESMSTKRLAALEQHVFMANCIDSMRMPLMAYSFATSRVEQLTKTADVHIDHYIRLSSVIVLRRCGLADRARILSEAKQAAADTTRSEKDEGSSASKGGFIPLSKVAGMDAEALSISVKNFYAMLFGGSTIGSSEALQPPHVSNITNVRARNRARAAVAEILARTHTEIYNAVQDPANQYGPDAVSAVGLRDPQKVELILSNGHIGSR 588          
BLAST of Gchil8252.t1 vs. uniprot
Match: A0A5J4YXW2_PORPP (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXW2_PORPP)

HSP 1 Score: 226 bits (576), Expect = 4.760e-66
Identity = 115/225 (51.11%), Postives = 160/225 (71.11%), Query Frame = 0
Query:    1 MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVVLRRCGLAERARLLSEAKEVAPTSARKPLSKVPGMDVETLSISVKNFYALLFGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQDPANEYGNDAIAAVGIRDPEKVKLIL 225
            M+RL EIM TL++SL P   R++QI AV+EVIL PL+ +C  M+ + L  +E+ +FLANC+D +R PL  ++FA++RVE+L   AD++ID Y QL+T  +LRRCGL +R R LS   E  P      L+ VPGMD+E+LSIS+KNFY+L+FGG ++G    L PP V+ + NVR RNRA+ +VAE L+  H+ ++ A+ DP NEYG DA AAVG+R P+ V L+L
Sbjct:  511 MSRLAEIMNTLESSLAPAEERESQIHAVVEVILIPLEMMCQQMSKKSLPPIEQNIFLANCLDALRQPLQPHAFAAARVEKLIEQADEYIDAYTQLATAAILRRCGLVDRLRQLSSRAEDVP------LACVPGMDLESLSISMKNFYSLVFGGGAVGLM-ALAPPKVNLVQNVRMRNRAKVSVAELLSEAHAALYNAVIDPKNEYGPDAAAAVGLRTPDMVSLVL 728          
BLAST of Gchil8252.t1 vs. uniprot
Match: A0A7S3EBG9_9RHOD (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EBG9_9RHOD)

HSP 1 Score: 199 bits (506), Expect = 3.100e-56
Identity = 110/228 (48.25%), Postives = 153/228 (67.11%), Query Frame = 0
Query:    1 MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVVLRRCGLAERARLLSEAKEVAPTSARKPLSKVPGMDVETLSISVKNFYALLF--GGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQDPANEYGNDAIAAVGIRDPEKVKLILT 226
            M+R+ EI  TLD SL P  AR+ QI A+LEVILNPL +LC  MA++ L  VER++F+ANCID MR+PL+++SFA+SR E L + AD HID YI+LST  VL+  GL E    +SEA + A       LS+VPG+D +TL++ + NFYA+LF  G  S+ + E L+PP + +I+N R R R   AV + L   +++I+KA+ DP NEY  D    +   DP+KV L+L+
Sbjct:  455 MSRVKEIALTLDGSLSPAEAREEQIVAILEVILNPLITLCARMAAKHLEPVEREIFMANCIDTMRVPLVSFSFAASRAESLMADADAHIDRYIELSTASVLKSFGLYE----VSEAIKFAQPGIA--LSRVPGLDSQTLAVGLNNFYAVLFERGQKSLANPERLRPPKIERISNSRMRLRVNRAVLQALTDLYAKIYKAMHDPENEYQVDQAGVLNPWDPQKVFLVLS 676          
BLAST of Gchil8252.t1 vs. uniprot
Match: A0A7S1EQ96_9RHOD (Conserved oligomeric Golgi complex subunit 6 (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQ96_9RHOD)

HSP 1 Score: 102 bits (253), Expect = 7.880e-24
Identity = 49/96 (51.04%), Postives = 75/96 (78.12%), Query Frame = 0
Query:    1 MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLS 96
            ++RL++I++TLD SL+ +++ ++QI AV+EVIL PLQ LC +MA + L  +E+ +FLANC+D +R PL+ Y+FASSRV+ L   AD +ID+Y QL+
Sbjct:   47 VSRLNDIVSTLDNSLIVDSSSESQIHAVIEVILTPLQQLCTTMA-KSLPVLEQNIFLANCVDALRAPLVPYAFASSRVQSLVEQADGYIDSYTQLA 141          
BLAST of Gchil8252.t1 vs. uniprot
Match: A0A1X6P269_PORUM (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P269_PORUM)

HSP 1 Score: 103 bits (258), Expect = 7.050e-22
Identity = 65/170 (38.24%), Postives = 92/170 (54.12%), Query Frame = 0
Query:   48 LSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVVLRRCGLAER---ARLLSEAKEVAPTSARK--------PLSKVPGMDVETLSISVKNFYALLFGGSSIGSSE--------VLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKAL 198
            L+  ER V+LANC+D MR PL  Y FA++ V  L + A+ H+  Y+ L++  VLR  GLA+R   AR    A + A              PL + PGMDVE+L++ V++FYALLF G                L+PP V  + NVR R+R + AVA  +A  H+ +  A+
Sbjct:  484 LTPAERCVYLANCVDAMRTPLEGYPFAAAAVASLDADAEAHLTEYVALASEAVLRGVGLADRVATARAWLAAADAADXXXXXXXXAPPGVPLCERPGMDVESLALGVRHFYALLFTGXXXXXXXXXXXXXXXALEPPAVGLLVNVRGRHRVKGAVAAAVADAHAALVAAV 653          
BLAST of Gchil8252.t1 vs. uniprot
Match: A0A8D8VFL6_9HEMI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8VFL6_9HEMI)

HSP 1 Score: 65.9 bits (159), Expect = 2.360e-9
Identity = 53/215 (24.65%), Postives = 95/215 (44.19%), Query Frame = 0
Query:   18 ENARQAQISAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVVLRRCGLAERARLLSEAKEVAPTSARKP-------LSKVPGMDVETLSISVKNFYALLFGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQDPANEYGNDAIAAVGIRDPEKVKLIL 225
            E  R +  + ++  I++PL    +  ASR LS V   V+L NC+  M   L   +      E+L +  D  +D      +   +    LA    +L E     P +  +P       L+++PGM+V +L++ +K F A L       +   L  P V+ I N   RN   +   + +   + ++++A+ DP N Y N  +     R P +++ +L
Sbjct:   11 ETDRASDTNRIVSNIIDPLLQTINLSASR-LSTVHMSVYLLNCVHTMSRALEETNIGHY-AERLAAQCDVQVDTLTSEQSSSFVVNLNLAPMYTILQEVNNKRPHTPGEPGRVGCEPLARIPGMEVTSLNVFLKQFDAFL------ANPNTLVLPQVNLILNGDHRNVILSRSYQVICAIYRQLYEAVHDPINLYENPTVLLA--RTPAEIRTML 215          
BLAST of Gchil8252.t1 vs. uniprot
Match: A0A8D8R9W5_9HEMI (Conserved oligomeric Golgi complex subunit 6 n=3 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8R9W5_9HEMI)

HSP 1 Score: 66.6 bits (161), Expect = 4.440e-9
Identity = 53/215 (24.65%), Postives = 95/215 (44.19%), Query Frame = 0
Query:   18 ENARQAQISAVLEVILNPLQSLCDSMASRKLSAVERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVVLRRCGLAERARLLSEAKEVAPTSARKP-------LSKVPGMDVETLSISVKNFYALLFGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQDPANEYGNDAIAAVGIRDPEKVKLIL 225
            E  R +  + ++  I++PL    +  ASR LS V   V+L NC+  M   L   +      E+L +  D  +D      +   +    LA    +L E     P +  +P       L+++PGM+V +L++ +K F A L       +   L  P V+ I N   RN   +   + +   + ++++A+ DP N Y N  +     R P +++ +L
Sbjct:  440 ETDRASDTNRIVSNIIDPLLQTINLSASR-LSTVHMSVYLLNCVHTMSRALEETNIGHY-AERLAAQCDVQVDTLTSEQSSSFVVNLNLAPMYTILQEVNNKRPHTPGEPGRVGCEPLARIPGMEVTSLNVFLKQFDAFL------ANPNTLVLPQVNLILNGDHRNAILSRSYQVICAIYRQLYEAVHDPINLYENPTVLLA--RTPAEIRTML 644          
The following BLAST results are available for this feature:
BLAST of Gchil8252.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IQK2_9FLOR7.790e-12180.43Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
R7QBZ7_CHOCR7.710e-11070.04Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A5J4YXW2_PORPP4.760e-6651.11Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S3EBG9_9RHOD3.100e-5648.25Conserved oligomeric Golgi complex subunit 6 n=2 T... [more]
A0A7S1EQ96_9RHOD7.880e-2451.04Conserved oligomeric Golgi complex subunit 6 (Frag... [more]
A0A1X6P269_PORUM7.050e-2238.24Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A8D8VFL6_9HEMI2.360e-924.65Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A8D8R9W5_9HEMI4.440e-924.65Conserved oligomeric Golgi complex subunit 6 n=3 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010490Conserved oligomeric Golgi complex subunit 6PFAMPF06419COG6coord: 3..225
e-value: 1.8E-30
score: 105.8
IPR010490Conserved oligomeric Golgi complex subunit 6PANTHERPTHR21506COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6coord: 1..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:881942..882643 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8252.t1Gchil8252.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 881942..882643 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8252.t1 ID=Gchil8252.t1|Name=Gchil8252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSA
VERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVV
LRRCGLAERARLLSEAKEVAPTSARKPLSKVPGMDVETLSISVKNFYALL
FGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQD
PANEYGNDAIAAVGIRDPEKVKLILTNCAVDTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010490COG6