Gchil8252.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8252.t1
Unique Name	Gchil8252.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	234

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:881942..882643 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706401.1
PFAMs	COG6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20293
GOs	GO:0000003,GO:0003006,GO:0007275,GO:0007548,GO:0008150,GO:0008406,GO:0009653,GO:0009887,GO:0022414,GO:0030334,GO:0032501,GO:0032502,GO:0032879,GO:0035262,GO:0040012,GO:0045137,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051270,GO:0061458,GO:0065007,GO:2000145
Evalue	2.62e-33
EggNOG OGs	KOG3758@1\|root,KOG3758@2759\|Eukaryota
Description	intra-Golgi vesicle-mediated transport
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8252	Gchil8252	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 881942..882643 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8252.t1.start1	Gchil8252.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 881942..881944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8252.t1.CDS1	Gchil8252.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 881942..882643 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8252.t1.exon1	Gchil8252.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 881942..882643 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8252.t1.stop1	Gchil8252.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 882641..882643 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8252.t1	Gchil8252.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 881942..882643 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:881942..882643+
coding sequence from alignment at tig00004384_pilon:881942..882643+

mRNA sequence

>Gchil8252.t1 ID=Gchil8252.t1|Name=Gchil8252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSA
VERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVV
LRRCGLAERARLLSEAKEVAPTSARKPLSKVPGMDVETLSISVKNFYALL
FGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQD
PANEYGNDAIAAVGIRDPEKVKLILTNCAVDTR*

spliced messenger RNA

>Gchil8252.t1 ID=Gchil8252.t1|Name=Gchil8252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004384_pilon:881942..882643+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgacacggctcgatgaaattatggctactctTGACGCCAGCCTCGTGCC
TGAAAATGCCCGTCAAGCTCAGATTTCCGCTGTTCTGGAGGTCATTCTTA
ATCCACTACAATCTTTGTGTGATAGCATGGCATCTCGAAAGCTTTCAGCT
GTTGAACGACAGGTATTTTTGGCAAACTGTATTGACTGCATGCGAATGCC
ATTGATGGCATACTCGTTTGCATCCAGCCGGGTCGAACAGCTCACTTCCC
TCGCCGACCAGCATATTGATAATTACATTCAATTGAGCACCATAGTAGTG
TTGCGAAGATGTGGCCTTGCAGAGAGAGCAAGGCTGTTATCTGAAGCAAA
AGAAGTCGCACCCACATCAGCCCGAAAGCCCTTGTCCAAAGTTCCTGGTA
TGGACGTGGAAACACTTTCCATATCTGTTAAGAATTTCTATGCTCTCCTA
TTTGGTGGTAGTTCTATTGGATCATCGGAAGTGCTTCAACCACCACATGT
ATCTAAGATAACGAATGTTCGATGGAGGAACCGAGCCCGTGCGGCTGTCG
CGGAAGGCTTAGCCACAACTCACTCTGAGATTCACAAAGCTCTCCAAGAT
CCGGCAAATGAATATGGCAACGACGCCATCGCCGCTGTAGGAATACGTGA
CCCGGAGAAGGTCAAATTAATTTTAACAAACTGTGCTGTAGATACAAGAT
AG

protein sequence of Gchil8252.t1

>Gchil8252.t1 ID=Gchil8252.t1|Name=Gchil8252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MTRLDEIMATLDASLVPENARQAQISAVLEVILNPLQSLCDSMASRKLSA
VERQVFLANCIDCMRMPLMAYSFASSRVEQLTSLADQHIDNYIQLSTIVV
LRRCGLAERARLLSEAKEVAPTSARKPLSKVPGMDVETLSISVKNFYALL
FGGSSIGSSEVLQPPHVSKITNVRWRNRARAAVAEGLATTHSEIHKALQD
PANEYGNDAIAAVGIRDPEKVKLILTNCAVDTR*

mRNA from alignment at tig00004384_pilon:881942..882643+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8252.t1 ID=Gchil8252.t1|Name=Gchil8252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004384_pilon:881942..882643+ (Gracilaria chilensis NLEC103_M9 male)
atgacacggctcgatgaaattatggctactctTGACGCCAGCCTCGTGCC
TGAAAATGCCCGTCAAGCTCAGATTTCCGCTGTTCTGGAGGTCATTCTTA
ATCCACTACAATCTTTGTGTGATAGCATGGCATCTCGAAAGCTTTCAGCT
GTTGAACGACAGGTATTTTTGGCAAACTGTATTGACTGCATGCGAATGCC
ATTGATGGCATACTCGTTTGCATCCAGCCGGGTCGAACAGCTCACTTCCC
TCGCCGACCAGCATATTGATAATTACATTCAATTGAGCACCATAGTAGTG
TTGCGAAGATGTGGCCTTGCAGAGAGAGCAAGGCTGTTATCTGAAGCAAA
AGAAGTCGCACCCACATCAGCCCGAAAGCCCTTGTCCAAAGTTCCTGGTA
TGGACGTGGAAACACTTTCCATATCTGTTAAGAATTTCTATGCTCTCCTA
TTTGGTGGTAGTTCTATTGGATCATCGGAAGTGCTTCAACCACCACATGT
ATCTAAGATAACGAATGTTCGATGGAGGAACCGAGCCCGTGCGGCTGTCG
CGGAAGGCTTAGCCACAACTCACTCTGAGATTCACAAAGCTCTCCAAGAT
CCGGCAAATGAATATGGCAACGACGCCATCGCCGCTGTAGGAATACGTGA
CCCGGAGAAGGTCAAATTAATTTTAACAAACTGTGCTGTAGATACAAGAT
AG

Coding sequence (CDS) from alignment at tig00004384_pilon:881942..882643+

>Gchil8252.t1 ID=Gchil8252.t1|Name=Gchil8252.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00004384_pilon:881942..882643+ (Gracilaria chilensis NLEC103_M9 male)
atgacacggctcgatgaaattatggctactctTGACGCCAGCCTCGTGCC
TGAAAATGCCCGTCAAGCTCAGATTTCCGCTGTTCTGGAGGTCATTCTTA
ATCCACTACAATCTTTGTGTGATAGCATGGCATCTCGAAAGCTTTCAGCT
GTTGAACGACAGGTATTTTTGGCAAACTGTATTGACTGCATGCGAATGCC
ATTGATGGCATACTCGTTTGCATCCAGCCGGGTCGAACAGCTCACTTCCC
TCGCCGACCAGCATATTGATAATTACATTCAATTGAGCACCATAGTAGTG
TTGCGAAGATGTGGCCTTGCAGAGAGAGCAAGGCTGTTATCTGAAGCAAA
AGAAGTCGCACCCACATCAGCCCGAAAGCCCTTGTCCAAAGTTCCTGGTA
TGGACGTGGAAACACTTTCCATATCTGTTAAGAATTTCTATGCTCTCCTA
TTTGGTGGTAGTTCTATTGGATCATCGGAAGTGCTTCAACCACCACATGT
ATCTAAGATAACGAATGTTCGATGGAGGAACCGAGCCCGTGCGGCTGTCG
CGGAAGGCTTAGCCACAACTCACTCTGAGATTCACAAAGCTCTCCAAGAT
CCGGCAAATGAATATGGCAACGACGCCATCGCCGCTGTAGGAATACGTGA
CCCGGAGAAGGTCAAATTAATTTTAACAAACTGTGCTGTAGATACAAGAT
AG