Gchil8205.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8205.t1
Unique NameGchil8205.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length183
Homology
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BLAST of Gchil8205.t1 vs. uniprot
Match: A0A2V3IQ04_9FLOR (Zinc finger and SCAN domain-containing protein 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ04_9FLOR)

HSP 1 Score: 142 bits (359), Expect = 4.440e-39
Identity = 160/181 (88.40%), Postives = 167/181 (92.27%), Query Frame = 0 
Query:    1 MYSTHAALQQHQLKCVYFGTGHHKAHPIGVVPDKPYQCAQCLVAFKKNSNLVKHMKLVHLGERNFECPYGECGRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDACSXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGHKTFGRKSVLARHMQTHR 181
            +YS+ +AL  HQ  CVY+ TGHHKAHPIG++P+KPYQCAQC VAFKKNSNLVKHMKLVHLGERNFECPY      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDACS XXXXXXXXXXXXXXXXXXXXXXXXXXXPGHKTFGRKSVLARHMQTHR
Sbjct:   67 IYSSQSALHNHQRTCVYYTTGHHKAHPIGLIPEKPYQCAQCGVAFKKNSNLVKHMKLVHLGERNFECPYTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDACSAXXXXXXXXXXXXXXXXXXXXXXXXXXXPGHKTFGRKSVLARHMQTHR 247
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BLAST of Gchil8205.t1 vs. uniprot
Match: R7QNN3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNN3_CHOCR)

HSP 1 Score: 57.0 bits (136), Expect = 1.410e-6
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 0 
Query:   34 KPYQCAQCLVAFKKNSNLVKHMKLVHLGERNFEC 67
            KP+ C +C  AFKKNSNL KHM+LVH GE+NF C
Sbjct:   84 KPFVCPECPTAFKKNSNLAKHMRLVHRGEKNFAC 117
The following BLAST results are available for this feature:
BLAST of Gchil8205.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IQ04_9FLOR4.440e-3988.40Zinc finger and SCAN domain-containing protein 22 ... [more]
R7QNN3_CHOCR1.410e-667.65Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 96..121
e-value: 8.9E-4
score: 28.5
coord: 65..90
e-value: 9.9E-4
score: 28.4
coord: 127..150
e-value: 0.0022
score: 27.3
coord: 36..59
e-value: 0.026
score: 23.7
coord: 156..180
e-value: 0.014
score: 24.6
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 65..90
e-value: 5.6E-5
score: 23.4
coord: 96..121
e-value: 7.0E-6
score: 26.2
coord: 36..59
e-value: 1.9E-4
score: 21.7
coord: 127..150
e-value: 9.3E-4
score: 19.5
coord: 156..180
e-value: 0.0011
score: 19.2
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 67..90
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 38..59
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 129..150
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 98..121
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 156..182
score: 8.57958
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 127..155
score: 14.357281
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 96..126
score: 14.835293
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 36..64
score: 13.525957
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 65..95
score: 14.87686
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 34..61
e-value: 2.5E-8
score: 35.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 62..92
e-value: 4.2E-10
score: 41.1
coord: 93..121
e-value: 1.8E-10
score: 42.3
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 154..181
e-value: 6.8E-8
score: 34.0
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 122..153
e-value: 4.9E-12
score: 47.5
NoneNo IPR availablePANTHERPTHR24390:SF159GH23506P-RELATEDcoord: 6..145
NoneNo IPR availablePANTHERPTHR24390ZINC FINGER PROTEINcoord: 71..178
coord: 6..145
NoneNo IPR availablePANTHERPTHR24390:SF159GH23506P-RELATEDcoord: 71..178
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 106..162
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 34..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:685218..685766 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8205.t1Gchil8205.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 685218..685766 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8205.t1 ID=Gchil8205.t1|Name=Gchil8205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=183bp
MYSTHAALQQHQLKCVYFGTGHHKAHPIGVVPDKPYQCAQCLVAFKKNSN
LVKHMKLVHLGERNFECPYGECGRMFGQKSNLNSHVRAVHLHQRPFKCHK
PGCTRAFSQKSGLKAHIKTVHDGERPYKCDACSAAFGHRGDLNRHIRVLH
NKERPYECQLCPGHKTFGRKSVLARHMQTHRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf