Gchil7248.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7248.t1
Unique NameGchil7248.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length469
Homology
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A2V3J6Q8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q8_9FLOR)

HSP 1 Score: 284 bits (726), Expect = 2.650e-90
Identity = 141/242 (58.26%), Postives = 178/242 (73.55%), Query Frame = 0
Query:   20 VINRNSTACTAPQKQVTTSSKPKYIRRTGLNTPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDEQLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQRGARASWDAPQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCLRPICNGKTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETLRDALRLPDVEWIDSFKLGSYVFKL 261
            +I R+++   + +++    +  KY+R+TG+N P+VLS EL +  G G+ISNR++VLS + KY+R NNLY    +K V  D  LS+L    G + F+D  R +K HLTDPS MGPEYEARA  FFE+YL  RGA ASW AP R  DPRG+NS  AQ++LR + QGMFAE Y+E CLRP+CNG TY+SRP  LK+VWAYIKN++LQD    RRI VSETLRDALRLPDVEWID+F+LG YVFKL
Sbjct:    1 MIRRSASNVQSDKRERKGHTAQKYVRKTGMNAPLVLSDELRALTGLGEISNRSQVLSEIGKYIRANNLYAMEGRKFVVCDSLLSALLNTEGTILFQDIQRFIKHHLTDPSEMGPEYEARAIDFFEKYLAARGALASWHAPHRTKDPRGLNSAEAQRRLRERGQGMFAEVYIEQCLRPLCNGNTYMSRPAILKSVWAYIKNNNLQDPSKRRRILVSETLRDALRLPDVEWIDTFQLGGYVFKL 242          
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A2V3J3S1_9FLOR (30S ribosomal protein S6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3S1_9FLOR)

HSP 1 Score: 272 bits (696), Expect = 2.570e-86
Identity = 140/210 (66.67%), Postives = 166/210 (79.05%), Query Frame = 0
Query:  263 MPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQLKVDERVLRHLAVKRPVLDAVKPIPEVDQPPPTGGRLSPDDPEYALQEFLAEYERDFANKRREDESDSGSVKADD----SAPQTQAPGEVSEVVASLKAWSQAENPKKEHSLSWLSDLKRKPS 468
            MPYYEVLCLA G L RKELGSLLHKTCRAF+DNGA VTRI PLGATGNGPRDLAYRIRINQVS+HKGFFVNVCAFASP+ LAEV RQLKVDER+LRH+A+++P  DAVKPIP++DQPP     +S +DPE+AL++FL E+ERD A K  E    +      D    +A +    G+++EVVASLKAWS+AE P  + SL+WLSDLKR P+
Sbjct:    1 MPYYEVLCLASGKLGRKELGSLLHKTCRAFIDNGATVTRISPLGATGNGPRDLAYRIRINQVSHHKGFFVNVCAFASPKALAEVERQLKVDERMLRHIAIRKPTTDAVKPIPDIDQPPRVKTGVSKNDPEHALRQFLVEHERDLAVKEYEQTRKNVREALADGEHTAALRGGENGKMNEVVASLKAWSEAEKPNSDPSLNWLSDLKRNPT 210          
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A1J3K707_NOCCA (Upstream activation factor subunit spp27 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3K707_NOCCA)

HSP 1 Score: 75.5 bits (184), Expect = 2.860e-11
Identity = 65/223 (29.15%), Postives = 101/223 (45.29%), Query Frame = 0
Query:   33 KQVTTSSKPKYIRRTGLNTPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDEQLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQRGARASWDAPQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCL-RPICNGKTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETLRDALRLPDVEWIDSFKL 254
            K   +  KPK     G      LS EL +F G  + + R  V+  L +Y++ENNL    +K+ +  DE L SLFQV     F+   +L K         G    + + K  +Q +E  G   S +  ++             KK +++   + A   L   L + + NG++ LSR D +K +W YIK +DLQD  + RR+   E L++   +   E I   KL
Sbjct:  122 KPAKSGEKPKRKGGGGFTKVCSLSPELQAFTGVTEFA-RTEVVKMLWRYIKENNLQDPNDKRTILCDESLRSLFQVESINMFQMSKQLSKHIWPLEDNTGESVGSSSPKNGKQKMETDGETESDEVNEK------------DKKQKKEVCVLLAPLPLSDALVKFLDNGESSLSRADVVKRLWEYIKQNDLQDPSDKRRVICDEKLKELFEVDSFEDISVSKL 331          
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A1J3I4W2_NOCCA (Protein TRI1 (Fragment) n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A1J3I4W2_NOCCA)

HSP 1 Score: 74.7 bits (182), Expect = 1.050e-10
Identity = 64/216 (29.63%), Postives = 99/216 (45.83%), Query Frame = 0
Query:   40 KPKYIRRTGLNTPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDEQLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQRGARASWDAPQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCL-RPICNGKTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETLRDALRLPDVEWIDSFKL 254
            KPK     G      LS EL +F G  + + R  V+  L +Y++ENNL    +K+ +  DE L SLFQV     F+   +L K         G    + + K  +Q +E  G   S +  ++             KK +++   + A   L   L + + NG++ LSR D +K +W YIK +DLQD  + RR+   E L++   +   E I   KL
Sbjct:  272 KPKRKGGGGFTKVCSLSPELQAFTGVTEFA-RTEVVKMLWRYIKENNLQDPNDKRTILCDESLRSLFQVESINMFQMSKQLSKHIWPLEENTGESVGSSSPKNGKQKMETDGETESDEVNEK------------DKKQKKEVCVLLAPLPLSDALVKFLDNGESSLSRADVVKRLWEYIKQNDLQDPSDKRRVICDEKLKELFEVDSFEDISVSKL 474          
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A8H7Q6N6_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q6N6_MORIS)

HSP 1 Score: 68.2 bits (165), Expect = 1.920e-10
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 0
Query:  263 MPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQLKVDERVLRHLAVK 363
            MP+YE++C+A+ NLA+  +  LL  +    +D G +V      G    G R+L +RI+ +Q  +  G +  +   A+P T+ ++ ++L+VD RVLRH  VK
Sbjct:    1 MPFYELVCIARSNLAKTNMHDLLKTSASQVLDKGGVVR-----GFENWGSRNLPHRIKRHQQYFDSGHYWLMHFDANPGTVQDLGKKLRVDPRVLRHTVVK 96          
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A2P6TP53_CHLSO (Mitochondrial ribosomal S6 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TP53_CHLSO)

HSP 1 Score: 67.4 bits (163), Expect = 6.800e-10
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0
Query:  263 MPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQLKVDERVLRHLAVKR 364
            MP+YE+  LAK  L +++L  +L    +  M++G +VT IR  G      R LAY IR     Y +     V   A P TL E+   L+VDER+LR + +KR
Sbjct:    1 MPFYELFALAKPGLGKQQLAQILRAVGQQVMEHGGVVTDIRSYGE-----RRLAYDIRQPGARYSEAAMWQVNFAAKPTTLQELDHTLRVDERMLRWMVLKR 97          
BLAST of Gchil7248.t1 vs. uniprot
Match: E1ZC20_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZC20_CHLVA)

HSP 1 Score: 66.6 bits (161), Expect = 1.420e-9
Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = 0
Query:  263 MPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQLKVDERVLRHLAVKR 364
            MP YE+  LAK  L +K + S++       M+ G +VT IR  G      R LAY IR   V + +     +   A+P TL E+   L+VDER+LR L +KR
Sbjct:    1 MPLYELFALAKPQLGKKAIASIMKAVASKVMEQGGVVTDIRSYGE-----RKLAYDIRQPGVRHKEAAMWQINFAANPATLPELDHTLRVDERMLRWLVLKR 97          
BLAST of Gchil7248.t1 vs. uniprot
Match: I0YS97_COCSC (Mitochondrial ribosomal protein S6 (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YS97_COCSC)

HSP 1 Score: 64.7 bits (156), Expect = 2.150e-9
Identity = 34/102 (33.33%), Postives = 56/102 (54.90%), Query Frame = 0
Query:  263 MPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVTRIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQLKVDERVLRHLAVKR 364
            MP YE+ C+A+  LAR E   L+     A +  G ++T I+  G      R+LAY IR   +  ++ F   +   A+P  L ++   LKVD+RV+R++ ++R
Sbjct:    1 MPLYELFCMARPALARTEASQLMRNAASAVLSKGGLLTDIKSYGQ-----RELAYEIRRPGMKINEAFMWQLDFAAAPPVLKDLEHLLKVDDRVVRYVILRR 97          
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A2V3J5S6_9FLOR (Upstream activation factor subunit spp27 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5S6_9FLOR)

HSP 1 Score: 69.3 bits (168), Expect = 2.500e-9
Identity = 56/216 (25.93%), Postives = 98/216 (45.37%), Query Frame = 0
Query:   25 STACTAPQKQVTTSSKP-KYIRRTGLNTPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDEQLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQRGARASWDA--PQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCLRPICNGKTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETL 237
            STA  + +K   +  KP K ++ TGL   VVLS+ L  FIGE  IS R+ +  ++S Y ++++L    +++R+  D+ L +   V    +F    + +   +  P       +  AKK  E+ ++++  R   +A  P                              L   L  +C G++ LSR D +K +W YI+ + L+D  +G++I   E L
Sbjct:   76 STAAGSKRKSSVSEPKPVKSVKLTGLERAVVLSEPLAEFIGETVIS-RSHIPKHISAYAKKHDLQDPTDRRRIICDDALKAALSVD-HFTFFSLAKTVSGLVRKPEECDEHLQELAKKCEEKIIQEKLERKQREALNPPPPRXXXXXXXXXXXXXXXXXPSAFSKPMQLSDALTAVC-GESQLSRTDVVKKIWEYIRENQLKDPDDGKKILCDEKL 288          
BLAST of Gchil7248.t1 vs. uniprot
Match: A0A1Y1XQP6_9FUNG (SWIB-domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XQP6_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 3.170e-9
Identity = 55/215 (25.58%), Postives = 87/215 (40.47%), Query Frame = 0
Query:   48 GLNTPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDEQLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQRGARASW--------DAPQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCLRPICNGKTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETLRDALRLPDVEWIDSFKL 254
            GLN P++LSKELG F+G  ++S R +++ +L +Y++EN+L    +K+ +  D +L  +F+V     F    +L+  HLT       + E                            D P++     G N  +                 L P L         +SRP  +K +W YIK H LQD  + R I   + L   L+   V      K+
Sbjct:  156 GLNAPLILSKELGEFLGAKEMS-RTQIVKHLWEYIKENDLQDPADKRFILSDPKLKKVFKVERFSGFS-MNKLLNDHLTKLDGTSCKKEKTEXXXXXXXXXXXXXXXXXXXXXXXXXDKPKKAAPNNGFNKPML----------------LSPALSSFLGNVREMSRPQVVKQIWDYIKEHSLQDPSDKRYILCDDQLFSILKTKRVHMFQMNKI 352          
The following BLAST results are available for this feature:
BLAST of Gchil7248.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q8_9FLOR2.650e-9058.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J3S1_9FLOR2.570e-8666.6730S ribosomal protein S6 n=1 Tax=Gracilariopsis ch... [more]
A0A1J3K707_NOCCA2.860e-1129.15Upstream activation factor subunit spp27 (Fragment... [more]
A0A1J3I4W2_NOCCA1.050e-1029.63Protein TRI1 (Fragment) n=4 Tax=Coluteocarpeae Tax... [more]
A0A8H7Q6N6_MORIS1.920e-1034.65Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A2P6TP53_CHLSO6.800e-1038.24Mitochondrial ribosomal S6 n=1 Tax=Chlorella sorok... [more]
E1ZC20_CHLVA1.420e-938.24Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
I0YS97_COCSC2.150e-933.33Mitochondrial ribosomal protein S6 (Fragment) n=1 ... [more]
A0A2V3J5S6_9FLOR2.500e-925.93Upstream activation factor subunit spp27 n=1 Tax=G... [more]
A0A1Y1XQP6_9FUNG3.170e-925.58SWIB-domain-containing protein n=1 Tax=Anaeromyces... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 184..267
e-value: 5.0E-4
score: 23.5
coord: 49..130
e-value: 0.0081
score: 10.7
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3D3.30.70.60coord: 266..383
e-value: 8.8E-25
score: 88.8
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 179..265
e-value: 3.3E-10
score: 41.8
coord: 44..134
e-value: 9.2E-13
score: 50.0
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 44..131
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 183..266
IPR000529Ribosomal protein S6PFAMPF01250Ribosomal_S6coord: 266..363
e-value: 6.1E-13
score: 48.9
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 52..125
e-value: 3.3E-10
score: 39.7
coord: 190..242
e-value: 2.1E-10
score: 40.3
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 48..127
score: 16.421774
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 183..264
score: 14.131201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 404..420
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 404..468
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 421..435
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 42..128
coord: 173..241
NoneNo IPR availableCDDcd15465bS6_mitocoord: 266..364
e-value: 5.56049E-22
score: 87.9733
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 53..125
e-value: 1.67397E-9
score: 52.1605
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 200..262
e-value: 3.32061E-14
score: 65.2573
IPR020814Ribosomal protein S6, plastid/chloroplastHAMAPMF_00360Ribosomal_S6coord: 263..366
score: 11.56893
IPR035980Ribosomal protein S6 superfamilySUPERFAMILY54995Ribosomal protein S6coord: 263..364

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:855156..857311 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7248.t1Gchil7248.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 855156..857311 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7248.t1 ID=Gchil7248.t1|Name=Gchil7248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=469bp
MFFTLYTKPDFRVCIRKWEVINRNSTACTAPQKQVTTSSKPKYIRRTGLN
TPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDE
QLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQR
GARASWDAPQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCLRPICNG
KTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETLRDALRLPDVEWID
SFKLGSYVFKLFMPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVT
RIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQL
KVDERVLRHLAVKRPVLDAVKPIPEVDQPPPTGGRLSPDDPEYALQEFLA
EYERDFANKRREDESDSGSVKADDSAPQTQAPGEVSEVVASLKAWSQAEN
PKKEHSLSWLSDLKRKPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR036885SWIB_MDM2_dom_sf
IPR000529Ribosomal_S6
IPR003121SWIB_MDM2_domain
IPR020814Ribosomal_S6_plastid/chlpt
IPR035980Ribosomal_S6_sf