Gchil7248.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7248.t1
Unique NameGchil7248.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length469
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:855156..857311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709165.1
PFAMsDEK_C,SWIB
Max annot lvl2759|Eukaryota
KEGG koko:K15223,ko:K22381
GOsGO:0000120,GO:0000226,GO:0000278,GO:0000280,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051225,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902680,GO:1902850,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue3.57e-13
EggNOG OGsCOG5531@1|root,KOG1946@2759|Eukaryota
EC2.3.2.27
Descriptionregulation of transcription by RNA polymerase I
COG categoryB
BRITEko00000,ko01000,ko03021,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7248Gchil7248Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 855156..857311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7248.t1Gchil7248.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 855156..857311 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7248.t1.start1Gchil7248.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 855156..855158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7248.t1.CDS1Gchil7248.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 855156..855940 +
Gchil7248.t1.CDS2Gchil7248.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 856690..857311 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7248.t1.exon1Gchil7248.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 855156..855940 +
Gchil7248.t1.exon2Gchil7248.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 856690..857311 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7248.t1.intron1Gchil7248.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 855941..856689 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7248.t1.stop1Gchil7248.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 857309..857311 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7248.t1 ID=Gchil7248.t1|Name=Gchil7248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=469bp
MFFTLYTKPDFRVCIRKWEVINRNSTACTAPQKQVTTSSKPKYIRRTGLN
TPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDE
QLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQR
GARASWDAPQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCLRPICNG
KTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETLRDALRLPDVEWID
SFKLGSYVFKLFMPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVT
RIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQL
KVDERVLRHLAVKRPVLDAVKPIPEVDQPPPTGGRLSPDDPEYALQEFLA
EYERDFANKRREDESDSGSVKADDSAPQTQAPGEVSEVVASLKAWSQAEN
PKKEHSLSWLSDLKRKPS*
back to top

spliced messenger RNA

>Gchil7248.t1 ID=Gchil7248.t1|Name=Gchil7248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00004441_pilon:855156..857311+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTTTACACTTTACACGAAACCTGATTTTCGAGTTTGCATACGAAA
ATGGGAAGTAATTAATCGAAACTCCACCGCTTGCACTGCACCACAGAAGC
AGGTCACAACCAGCTCAAAGCCGAAATATATTCGAAGAACAGGTTTGAAC
ACCCCAGTGGTGCTTTCAAAAGAATTAGGGAGCTTCATCGGTGAAGGTGA
TATCAGCAACCGCGCTCGGGTCCTATCATACCTAAGCAAGTATTTGAGAG
AGAACAACCTGTATGTGGGCGGTGAAAAGAAGCGCGTTTCATTTGATGAG
CAACTGTCTTCACTTTTTCAAGTAACGGGCGAAGTGAGTTTCAAGGATTT
TTTCCGTCTCATGAAACCCCACTTAACAGATCCTTCAGTCATGGGTCCCG
AATATGAAGCACGAGCAAAGAAGTTCTTCGAACAGTATCTTGAACAAAGG
GGTGCTCGCGCTTCCTGGGATGCACCTCAGCGAGGTTTAGACCCTCGTGG
AATGAACTCTTTTGTTGCGCAGAAAAAGCTCAGAAGAAAACGTCAGGGAA
TGTTTGCTGAGGCATATCTTGAACCCTGTCTTCGTCCCATCTGTAATGGG
AAGACATACTTATCGAGACCGGACGCCTTGAAAGCAGTTTGGGCGTACAT
AAAGAATCATGATCTTCAAGACGCTCAAAATGGAAGAAGGATTCGTGTCT
CTGAAACCTTGCGCGATGCACTCAGACTCCCAGACGTGGAATGGATAGAC
TCCTTCAAATTGGGAAGCTACGTCTTCAAATTGTTTATGCCGTACTACGA
AGTTCTCTGTCTTGCAAAAGGCAATTTGGCGAGGAAGGAGTTGGGCAGTC
TACTTCACAAAACATGTCGTGCTTTTATGGATAACGGAGCAATTGTTACG
AGGATTAGACCGCTTGGTGCGACTGGAAACGGACCACGAGATCTAGCCTA
TCGAATAAGAATCAATCAGGTTTCATATCACAAAGGATTCTTTGTCAATG
TCTGCGCTTTTGCGTCGCCGCAGACGTTGGCTGAGGTTAGCCGCCAGCTC
AAAGTAGACGAAAGAGTCCTCCGACATTTGGCAGTAAAAAGGCCTGTCCT
GGATGCTGTCAAACCAATTCCCGAAGTCGATCAGCCGCCACCTACGGGAG
GAAGACTGAGTCCTGATGATCCAGAATACGCATTGCAAGAATTCCTAGCA
GAGTACGAAAGAGATTTCGCAAACAAGAGACGAGAAGACGAGAGCGACAG
TGGATCTGTTAAAGCTGATGATTCAGCACCACAAACACAAGCACCTGGAG
AAGTAAGTGAGGTTGTAGCGAGCCTTAAGGCGTGGTCGCAAGCGGAAAAC
CCAAAGAAAGAACATAGTTTGAGCTGGCTCTCGGACCTTAAAAGAAAACC
ATCATAA
back to top

protein sequence of Gchil7248.t1

>Gchil7248.t1 ID=Gchil7248.t1|Name=Gchil7248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=469bp
MFFTLYTKPDFRVCIRKWEVINRNSTACTAPQKQVTTSSKPKYIRRTGLN
TPVVLSKELGSFIGEGDISNRARVLSYLSKYLRENNLYVGGEKKRVSFDE
QLSSLFQVTGEVSFKDFFRLMKPHLTDPSVMGPEYEARAKKFFEQYLEQR
GARASWDAPQRGLDPRGMNSFVAQKKLRRKRQGMFAEAYLEPCLRPICNG
KTYLSRPDALKAVWAYIKNHDLQDAQNGRRIRVSETLRDALRLPDVEWID
SFKLGSYVFKLFMPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAIVT
RIRPLGATGNGPRDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQL
KVDERVLRHLAVKRPVLDAVKPIPEVDQPPPTGGRLSPDDPEYALQEFLA
EYERDFANKRREDESDSGSVKADDSAPQTQAPGEVSEVVASLKAWSQAEN
PKKEHSLSWLSDLKRKPS*
back to top

mRNA from alignment at tig00004441_pilon:855156..857311+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7248.t1 ID=Gchil7248.t1|Name=Gchil7248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2156bp|location=Sequence derived from alignment at tig00004441_pilon:855156..857311+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTTTACACTTTACACGAAACCTGATTTTCGAGTTTGCATACGAAA
ATGGGAAGTAATTAATCGAAACTCCACCGCTTGCACTGCACCACAGAAGC
AGGTCACAACCAGCTCAAAGCCGAAATATATTCGAAGAACAGGTTTGAAC
ACCCCAGTGGTGCTTTCAAAAGAATTAGGGAGCTTCATCGGTGAAGGTGA
TATCAGCAACCGCGCTCGGGTCCTATCATACCTAAGCAAGTATTTGAGAG
AGAACAACCTGTATGTGGGCGGTGAAAAGAAGCGCGTTTCATTTGATGAG
CAACTGTCTTCACTTTTTCAAGTAACGGGCGAAGTGAGTTTCAAGGATTT
TTTCCGTCTCATGAAACCCCACTTAACAGATCCTTCAGTCATGGGTCCCG
AATATGAAGCACGAGCAAAGAAGTTCTTCGAACAGTATCTTGAACAAAGG
GGTGCTCGCGCTTCCTGGGATGCACCTCAGCGAGGTTTAGACCCTCGTGG
AATGAACTCTTTTGTTGCGCAGAAAAAGCTCAGAAGAAAACGTCAGGGAA
TGTTTGCTGAGGCATATCTTGAACCCTGTCTTCGTCCCATCTGTAATGGG
AAGACATACTTATCGAGACCGGACGCCTTGAAAGCAGTTTGGGCGTACAT
AAAGAATCATGATCTTCAAGACGCTCAAAATGGAAGAAGGATTCGTGTCT
CTGAAACCTTGCGCGATGCACTCAGACTCCCAGACGTGGAATGGATAGAC
TCCTTCAAATTGGGAAGCTACGTCTTCAAATTGTTGTCCAAAAGAGAAAA
ATAATGCTGACAGACAAGCACTTTGAATCTCTGTGACACCCTTGGCTTAC
GCTGATCTCTTCTTTCAAACCCACACTTGTCTCGCGAAAATATTACGCGC
TGATGGGAAGACCCGGTAATGTTTTCGGCATCGTATTCTATGCGTCCGAA
TGCAAACTGCCAGAAATGCGTCCGATTTCTAGCCCACGTCGGGAATATTG
CGCAGGAGATCGAAAGGAACCGAAAAAAACTGCTACCTTGCGTCGTGATG
AAGAAGGATGTTGTGGTATGAAATTTTCATGCTCTCTAAACGCCTTGTTT
TTACCCGCATCGTTCTTTAACGCCATATTTGTTGATACACAGCGGTAGCC
TACGAAGGGTTTTAGAAAAGCAAACCTCGACCTTCGCTGGTGCTCGATAT
GTGGAATGCACATTGAATTTGATTAAAATTATCAGCTTTCGGTTATGTAC
TCAAGCTACTGTACACATAAAAACTACGGCCAACGGCACTTCAGAGCCTG
AAGTGCAGATTGCGCATTTTTTGCGATCAGAACCCCCCGACACAGATTTG
TTGCTTAATACATCCCATCCCTTCCTCCTGTAGCGACAATTTCTTCAAGA
TTTGAAGCAGTTTGAAGCCTCTCCAACACAGCATTCCCTCTATAGGCTGG
GAACCAGGGAGAGGTTGGATCTTCAAATAGTCTTCATCGCTCATTGGACT
TCTTTCCCTCTCTCATTGAGCTTGCTTGCCGCAGTATGCCGTACTACGAA
GTTCTCTGTCTTGCAAAAGGCAATTTGGCGAGGAAGGAGTTGGGCAGTCT
ACTTCACAAAACATGTCGTGCTTTTATGGATAACGGAGCAATTGTTACGA
GGATTAGACCGCTTGGTGCGACTGGAAACGGACCACGAGATCTAGCCTAT
CGAATAAGAATCAATCAGGTTTCATATCACAAAGGATTCTTTGTCAATGT
CTGCGCTTTTGCGTCGCCGCAGACGTTGGCTGAGGTTAGCCGCCAGCTCA
AAGTAGACGAAAGAGTCCTCCGACATTTGGCAGTAAAAAGGCCTGTCCTG
GATGCTGTCAAACCAATTCCCGAAGTCGATCAGCCGCCACCTACGGGAGG
AAGACTGAGTCCTGATGATCCAGAATACGCATTGCAAGAATTCCTAGCAG
AGTACGAAAGAGATTTCGCAAACAAGAGACGAGAAGACGAGAGCGACAGT
GGATCTGTTAAAGCTGATGATTCAGCACCACAAACACAAGCACCTGGAGA
AGTAAGTGAGGTTGTAGCGAGCCTTAAGGCGTGGTCGCAAGCGGAAAACC
CAAAGAAAGAACATAGTTTGAGCTGGCTCTCGGACCTTAAAAGAAAACCA
TCATAA
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:855156..857311+

>Gchil7248.t1 ID=Gchil7248.t1|Name=Gchil7248.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00004441_pilon:855156..857311+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTTTACACTTTACACGAAACCTGATTTTCGAGTTTGCATACGAAA
ATGGGAAGTAATTAATCGAAACTCCACCGCTTGCACTGCACCACAGAAGC
AGGTCACAACCAGCTCAAAGCCGAAATATATTCGAAGAACAGGTTTGAAC
ACCCCAGTGGTGCTTTCAAAAGAATTAGGGAGCTTCATCGGTGAAGGTGA
TATCAGCAACCGCGCTCGGGTCCTATCATACCTAAGCAAGTATTTGAGAG
AGAACAACCTGTATGTGGGCGGTGAAAAGAAGCGCGTTTCATTTGATGAG
CAACTGTCTTCACTTTTTCAAGTAACGGGCGAAGTGAGTTTCAAGGATTT
TTTCCGTCTCATGAAACCCCACTTAACAGATCCTTCAGTCATGGGTCCCG
AATATGAAGCACGAGCAAAGAAGTTCTTCGAACAGTATCTTGAACAAAGG
GGTGCTCGCGCTTCCTGGGATGCACCTCAGCGAGGTTTAGACCCTCGTGG
AATGAACTCTTTTGTTGCGCAGAAAAAGCTCAGAAGAAAACGTCAGGGAA
TGTTTGCTGAGGCATATCTTGAACCCTGTCTTCGTCCCATCTGTAATGGG
AAGACATACTTATCGAGACCGGACGCCTTGAAAGCAGTTTGGGCGTACAT
AAAGAATCATGATCTTCAAGACGCTCAAAATGGAAGAAGGATTCGTGTCT
CTGAAACCTTGCGCGATGCACTCAGACTCCCAGACGTGGAATGGATAGAC
TCCTTCAAATTGGGAAGCTACGTCTTCAAATTGTTTATGCCGTACTACGA
AGTTCTCTGTCTTGCAAAAGGCAATTTGGCGAGGAAGGAGTTGGGCAGTC
TACTTCACAAAACATGTCGTGCTTTTATGGATAACGGAGCAATTGTTACG
AGGATTAGACCGCTTGGTGCGACTGGAAACGGACCACGAGATCTAGCCTA
TCGAATAAGAATCAATCAGGTTTCATATCACAAAGGATTCTTTGTCAATG
TCTGCGCTTTTGCGTCGCCGCAGACGTTGGCTGAGGTTAGCCGCCAGCTC
AAAGTAGACGAAAGAGTCCTCCGACATTTGGCAGTAAAAAGGCCTGTCCT
GGATGCTGTCAAACCAATTCCCGAAGTCGATCAGCCGCCACCTACGGGAG
GAAGACTGAGTCCTGATGATCCAGAATACGCATTGCAAGAATTCCTAGCA
GAGTACGAAAGAGATTTCGCAAACAAGAGACGAGAAGACGAGAGCGACAG
TGGATCTGTTAAAGCTGATGATTCAGCACCACAAACACAAGCACCTGGAG
AAGTAAGTGAGGTTGTAGCGAGCCTTAAGGCGTGGTCGCAAGCGGAAAAC
CCAAAGAAAGAACATAGTTTGAGCTGGCTCTCGGACCTTAAAAGAAAACC
ATCATAA
back to top