Gchil7159.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7159.t1
Unique NameGchil7159.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Homology
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A2V3IR06_9FLOR (Ribosomal silencing factor RsfS n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR06_9FLOR)

HSP 1 Score: 108 bits (269), Expect = 1.020e-25
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 0
Query:  107 KCVPAVSGAPPSPPQLAAFMERQYGALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLWAPRAP 226
            K +PAVSG+ PSPP L   +E ++GA D V++DVR  ATFAD  L+C A   +H+RA+A  +   + +  V +    VS+ G   D+W+VVD+G  VVH+MT   R+ Y LE LW P  P
Sbjct:   63 KQIPAVSGSVPSPPALKTLLENEHGAYDVVIIDVREKATFADSFLLCCAHTPAHIRAIAEQLAHFINSAQVTLDGHSVSICGHQHDEWLVVDIGHTVVHIMTEHARQQYRLEDLWIPDTP 182          
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A7J7IGF1_9RHOD (Mitochondrial assembly of ribosomal large subunit 1 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGF1_9RHOD)

HSP 1 Score: 83.2 bits (204), Expect = 1.270e-15
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 0
Query:  109 VPAVSGAPPSPPQLAAFMERQYGALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLW 221
            +P V G  PS P++A ++E +  AL+ VVLDV   A+F D  ++ +   T+H+  +A  +QR L    V V  E   + G   DDW+++D+G+ +VH+MTP  R+ Y LE LW
Sbjct:  130 LPEVRGDLPSVPEVAHWLEEEQ-ALNVVVLDVSEKASFTDTFIIATGFTTNHIIHMADSIQRRLVERNVTVEGEDPFIEGRESDDWMLIDLGSYIVHIMTPAARERYDLEGLW 241          
BLAST of Gchil7159.t1 vs. uniprot
Match: UPI000FDEF1DF (ribosome silencing factor n=1 Tax=Serratia microhaemolytica TaxID=2675110 RepID=UPI000FDEF1DF)

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-14
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 0
Query:  134 DAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLW 221
            D VVLDVR  ++  D+M++C+   T HV ++A    +HL  +    G E  S+ G A  DWIVVD+G  +VHVM  E R+LY LE LW
Sbjct:   21 DIVVLDVRGKSSITDYMIICTGTSTRHVMSIA----QHLAQEARAAGMELHSMKGQAASDWIVVDLGEAIVHVMQEESRQLYELEKLW 104          
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A2N7U923_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Halomonas endophytica TaxID=2033802 RepID=A0A2N7U923_9GAMM)

HSP 1 Score: 76.6 bits (187), Expect = 2.270e-14
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 0
Query:  132 ALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLWA 222
            A D  +LDV    +  D M++ S   T HV A+A+ V     A G+R    P+ + G AD DW++VD+G +VVHVM PE R+LY LE LWA
Sbjct:   19 ARDVAILDVSRLTSVTDLMILASGTSTRHVAALANHVVEQAKAQGLR----PLGVEGQADSDWVLVDLGDIVVHVMLPETRQLYDLERLWA 105          
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A6S6WIW0_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Pseudidiomarina piscicola TaxID=2614830 RepID=A0A6S6WIW0_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 2.280e-14
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 0
Query:  134 DAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLWAPR 224
            D  VLDV      AD+M+VCS    +HV+++A+    H+ A+    G  P+ + GA   +W++VD+G +VVHVM   +R  Y LE LWAPR
Sbjct:   21 DIKVLDVNGQTDIADFMVVCSGSSKTHVKSLAN----HVAAESKHNGVPPIGVEGAESSEWVLVDLGDVVVHVMQESIRDFYELEKLWAPR 107          
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A847BEI7_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Halomonadaceae bacterium TaxID=2026746 RepID=A0A847BEI7_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 4.090e-14
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0
Query:  132 ALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLWA 222
            A D  +LDV    +  D M+V S   T HV A+A+ V   + A+GV    +P+ + G A  DW++VD+G LVVHVM PE R+LY LE LWA
Sbjct:   29 AKDVTLLDVSRLTSVTDLMVVASGTSTRHVMALANNVVERVKAEGV----QPLGVEGEAGADWVLVDLGDLVVHVMLPETRELYDLERLWA 115          
BLAST of Gchil7159.t1 vs. uniprot
Match: U3BGE6_VIBPR (Ribosomal silencing factor RsfS n=2 Tax=Vibrio TaxID=662 RepID=U3BGE6_VIBPR)

HSP 1 Score: 75.5 bits (184), Expect = 4.240e-14
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 0
Query:  132 ALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLW 221
            A D + LDV+  ++  D+M+VC+     HV ++A     H+ ++  + G EP+ + G A+ +W+VVD+GT +VHVM  + R+LY LE LW
Sbjct:   19 AQDIITLDVQGKSSVTDYMIVCTGTSKRHVSSIAD----HVASEAKKAGLEPLGIDGEAEGEWVVVDMGTTMVHVMQEDQRELYQLEKLW 104          
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A0R0C655_9GAMM (Ribosomal silencing factor RsfS n=2 Tax=Stenotrophomonas TaxID=40323 RepID=A0A0R0C655_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 4.980e-14
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 0
Query:  116 PPSPPQLAAFME---RQYGALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLW 221
            PPS P L A +     +  A DAV +DVR  ++ AD+M+V S   T HV+++   V R     GV     P+ + G  + +W++VD+G ++VHVM P +R+LYALE LW
Sbjct:   16 PPSVPALLASVHAALEELKARDAVEIDVRGKSSVADYMVVVSGTSTRHVKSIGDEVVRFAKNLGVM----PLGVEGEREAEWVLVDLGDVIVHVMLPRVRELYALERLW 120          
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A1B3W908_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Luteimonas sp. JM171 TaxID=1896164 RepID=A0A1B3W908_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 5.100e-14
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 0
Query:  128 RQYGALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLW 221
             Q  A D V +DVR   +  D+MLV S   + HV+++A  V +H      R+G +P+ + G  + +W++VD+G +VVHVM P +R+ YALE LW
Sbjct:   31 EQLKARDTVEIDVRGKTSVCDYMLVASGTSSRHVKSIADEVVKHAK----RLGVQPLGVEGEREAEWVLVDLGDVVVHVMLPRVREFYALERLW 120          
BLAST of Gchil7159.t1 vs. uniprot
Match: A0A6N7EYA8_9GAMM (Ribosomal silencing factor RsfS n=1 Tax=Ostreibacterium oceani TaxID=2654998 RepID=A0A6N7EYA8_9GAMM)

HSP 1 Score: 75.5 bits (184), Expect = 5.490e-14
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 0
Query:  132 ALDAVVLDVRADATFADWMLVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVGTLVVHVMTPEMRKLYALELLWA 222
            A D  VLDVR  A+FAD+M+V S     H++A+A  V  H+  D  + G+ P+S  G    +WI+VD+G ++VH+M PE R LY LE LW+
Sbjct:   19 AQDVTVLDVRNKASFADYMIVASGTSDRHLKAMADQV--HI--DAKKAGSPPLSTEGQDSRNWILVDLGDVIVHLMKPETRALYELEKLWS 105          
The following BLAST results are available for this feature:
BLAST of Gchil7159.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IR06_9FLOR1.020e-2545.00Ribosomal silencing factor RsfS n=1 Tax=Gracilario... [more]
A0A7J7IGF1_9RHOD1.270e-1538.94Mitochondrial assembly of ribosomal large subunit ... [more]
UPI000FDEF1DF1.100e-1445.45ribosome silencing factor n=1 Tax=Serratia microha... [more]
A0A2N7U923_9GAMM2.270e-1445.05Ribosomal silencing factor RsfS n=1 Tax=Halomonas ... [more]
A0A6S6WIW0_9GAMM2.280e-1441.76Ribosomal silencing factor RsfS n=1 Tax=Pseudidiom... [more]
A0A847BEI7_9GAMM4.090e-1446.15Ribosomal silencing factor RsfS n=1 Tax=Halomonada... [more]
U3BGE6_VIBPR4.240e-1438.89Ribosomal silencing factor RsfS n=2 Tax=Vibrio Tax... [more]
A0A0R0C655_9GAMM4.980e-1440.37Ribosomal silencing factor RsfS n=2 Tax=Stenotroph... [more]
A0A1B3W908_9GAMM5.100e-1440.43Ribosomal silencing factor RsfS n=1 Tax=Luteimonas... [more]
A0A6N7EYA8_9GAMM5.490e-1445.05Ribosomal silencing factor RsfS n=1 Tax=Ostreibact... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02410RsfScoord: 122..221
e-value: 1.0E-20
score: 74.0
NoneNo IPR availablePANTHERPTHR21043:SF0MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1coord: 129..224
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
IPR043519Nucleotidyltransferase superfamilyGENE3D3.30.460.10Beta Polymerase, domain 2coord: 120..228
e-value: 2.6E-24
score: 87.1
IPR043519Nucleotidyltransferase superfamilySUPERFAMILY81301Nucleotidyltransferasecoord: 128..224
IPR004394Protein Iojap/ribosomal silencing factor RsfSTIGRFAMTIGR00090TIGR00090coord: 131..221
e-value: 6.0E-21
score: 72.5
IPR004394Protein Iojap/ribosomal silencing factor RsfSPANTHERPTHR21043IOJAP SUPERFAMILY ORTHOLOGcoord: 129..224
IPR004394Protein Iojap/ribosomal silencing factor RsfSHAMAPMF_01477Iojap_RsfScoord: 115..222
score: 17.942976

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:386230..386919 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7159.t1Gchil7159.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 386230..386919 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7159.t1 ID=Gchil7159.t1|Name=Gchil7159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MDPPRACCTVCCLVPAFRGGALACALHGVDATLTHAAATLAMARGVRALS
SRVATAVAAFTTVGAANRARAAAYIRRHPASQPQFVPPSLATPLPSSSSS
LTDAPYKCVPAVSGAPPSPPQLAAFMERQYGALDAVVLDVRADATFADWM
LVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVG
TLVVHVMTPEMRKLYALELLWAPRAPLEC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043519NT_sf
IPR004394Iojap/RsfS/C7orf30