Gchil7159.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7159.t1
Unique NameGchil7159.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:386230..386919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI138CT
PFAMsRsfS
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006417,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113
Evalue3.88e-14
EggNOG OGsCOG0799@1|root,KOG3212@2759|Eukaryota
DescriptionMitochondrial assembly of ribosomal large subunit
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7159Gchil7159Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 386230..386919 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7159.t1.stop1Gchil7159.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 386230..386232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7159.t1.CDS1Gchil7159.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 386230..386919 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7159.t1.exon1Gchil7159.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 386230..386919 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7159.t1.start1Gchil7159.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 386917..386919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7159.t1Gchil7159.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 386230..386919 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7159.t1 ID=Gchil7159.t1|Name=Gchil7159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MDPPRACCTVCCLVPAFRGGALACALHGVDATLTHAAATLAMARGVRALS
SRVATAVAAFTTVGAANRARAAAYIRRHPASQPQFVPPSLATPLPSSSSS
LTDAPYKCVPAVSGAPPSPPQLAAFMERQYGALDAVVLDVRADATFADWM
LVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVG
TLVVHVMTPEMRKLYALELLWAPRAPLEC*
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spliced messenger RNA

>Gchil7159.t1 ID=Gchil7159.t1|Name=Gchil7159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00004441_pilon:386230..386919- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCGCCCCGCGCTTGCTGCACGGTTTGTTGCTTGGTGCCCGCTTT
TCGCGGCGGCGCGCTTGCTTGTGCGCTTCATGGCGTGGACGCGACGCTGA
CACACGCGGCGGCGACGCTAGCTATGGCACGCGGCGTGCGCGCGCTGAGC
TCGCGCGTGGCGACTGCCGTCGCTGCTTTCACCACCGTTGGCGCTGCCAA
TCGCGCGCGCGCCGCCGCATACATTCGTCGTCACCCCGCGTCACAGCCGC
AATTCGTACCGCCATCGTTGGCGACACCGCTGCCATCGTCGTCGTCGTCG
CTCACAGACGCGCCGTACAAGTGCGTGCCCGCCGTGAGCGGGGCGCCGCC
GTCGCCGCCGCAGCTCGCCGCGTTTATGGAGCGGCAGTATGGCGCGTTGG
ACGCCGTCGTGCTTGATGTCAGAGCTGATGCGACGTTTGCTGACTGGATG
CTTGTGTGTAGCGCGCTTGGAACCTCGCATGTGCGCGCCGTGGCACATGG
GGTGCAACGCCATTTGACCGCGGATGGTGTGCGAGTTGGAAATGAACCTG
TTTCGCTTGTGGGTGCTGCCGACGATGATTGGATTGTTGTTGATGTTGGT
ACTCTTGTCGTGCACGTTATGACGCCTGAGATGCGCAAACTCTACGCATT
GGAACTTCTTTGGGCACCGCGTGCACCGTTGGAGTGTTAG
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protein sequence of Gchil7159.t1

>Gchil7159.t1 ID=Gchil7159.t1|Name=Gchil7159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MDPPRACCTVCCLVPAFRGGALACALHGVDATLTHAAATLAMARGVRALS
SRVATAVAAFTTVGAANRARAAAYIRRHPASQPQFVPPSLATPLPSSSSS
LTDAPYKCVPAVSGAPPSPPQLAAFMERQYGALDAVVLDVRADATFADWM
LVCSALGTSHVRAVAHGVQRHLTADGVRVGNEPVSLVGAADDDWIVVDVG
TLVVHVMTPEMRKLYALELLWAPRAPLEC*
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mRNA from alignment at tig00004441_pilon:386230..386919-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7159.t1 ID=Gchil7159.t1|Name=Gchil7159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00004441_pilon:386230..386919- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCCGCCCCGCGCTTGCTGCACGGTTTGTTGCTTGGTGCCCGCTTT
TCGCGGCGGCGCGCTTGCTTGTGCGCTTCATGGCGTGGACGCGACGCTGA
CACACGCGGCGGCGACGCTAGCTATGGCACGCGGCGTGCGCGCGCTGAGC
TCGCGCGTGGCGACTGCCGTCGCTGCTTTCACCACCGTTGGCGCTGCCAA
TCGCGCGCGCGCCGCCGCATACATTCGTCGTCACCCCGCGTCACAGCCGC
AATTCGTACCGCCATCGTTGGCGACACCGCTGCCATCGTCGTCGTCGTCG
CTCACAGACGCGCCGTACAAGTGCGTGCCCGCCGTGAGCGGGGCGCCGCC
GTCGCCGCCGCAGCTCGCCGCGTTTATGGAGCGGCAGTATGGCGCGTTGG
ACGCCGTCGTGCTTGATGTCAGAGCTGATGCGACGTTTGCTGACTGGATG
CTTGTGTGTAGCGCGCTTGGAACCTCGCATGTGCGCGCCGTGGCACATGG
GGTGCAACGCCATTTGACCGCGGATGGTGTGCGAGTTGGAAATGAACCTG
TTTCGCTTGTGGGTGCTGCCGACGATGATTGGATTGTTGTTGATGTTGGT
ACTCTTGTCGTGCACGTTATGACGCCTGAGATGCGCAAACTCTACGCATT
GGAACTTCTTTGGGCACCGCGTGCACCGTTGGAGTGTTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:386230..386919-

>Gchil7159.t1 ID=Gchil7159.t1|Name=Gchil7159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00004441_pilon:386230..386919- (Gracilaria chilensis NLEC103_M9 male)
ATGGACCCGCCCCGCGCTTGCTGCACGGTTTGTTGCTTGGTGCCCGCTTT
TCGCGGCGGCGCGCTTGCTTGTGCGCTTCATGGCGTGGACGCGACGCTGA
CACACGCGGCGGCGACGCTAGCTATGGCACGCGGCGTGCGCGCGCTGAGC
TCGCGCGTGGCGACTGCCGTCGCTGCTTTCACCACCGTTGGCGCTGCCAA
TCGCGCGCGCGCCGCCGCATACATTCGTCGTCACCCCGCGTCACAGCCGC
AATTCGTACCGCCATCGTTGGCGACACCGCTGCCATCGTCGTCGTCGTCG
CTCACAGACGCGCCGTACAAGTGCGTGCCCGCCGTGAGCGGGGCGCCGCC
GTCGCCGCCGCAGCTCGCCGCGTTTATGGAGCGGCAGTATGGCGCGTTGG
ACGCCGTCGTGCTTGATGTCAGAGCTGATGCGACGTTTGCTGACTGGATG
CTTGTGTGTAGCGCGCTTGGAACCTCGCATGTGCGCGCCGTGGCACATGG
GGTGCAACGCCATTTGACCGCGGATGGTGTGCGAGTTGGAAATGAACCTG
TTTCGCTTGTGGGTGCTGCCGACGATGATTGGATTGTTGTTGATGTTGGT
ACTCTTGTCGTGCACGTTATGACGCCTGAGATGCGCAAACTCTACGCATT
GGAACTTCTTTGGGCACCGCGTGCACCGTTGGAGTGTTAG
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