Gchil6948.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6948.t1
Unique NameGchil6948.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length179
Homology
BLAST of Gchil6948.t1 vs. uniprot
Match: A0A1X6P2N4_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2N4_PORUM)

HSP 1 Score: 102 bits (255), Expect = 1.670e-25
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0
Query:   52 MPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            MPALE DLL+PD AVEA KHKLKRLVQSPNS+FMDVKCPGC+ ITTVFSHAQTVV
Sbjct:    1 MPALECDLLHPDPAVEAKKHKLKRLVQSPNSFFMDVKCPGCFTITTVFSHAQTVV 55          
BLAST of Gchil6948.t1 vs. uniprot
Match: M2VUX8_GALSU (40S ribosomal protein S27 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VUX8_GALSU)

HSP 1 Score: 95.1 bits (235), Expect = 1.730e-22
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0
Query:   52 MPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            MP L+ DLL+PD AVEA KHKL+RL+ SPNS+FMDVKCPGC+ ITTVFSHAQTVV
Sbjct:    1 MPVLQGDLLHPDPAVEARKHKLRRLIPSPNSFFMDVKCPGCFQITTVFSHAQTVV 55          
BLAST of Gchil6948.t1 vs. uniprot
Match: A0A0W4ZSL1_PNEJ7 (40S ribosomal protein S27 n=2 Tax=Pneumocystis TaxID=4753 RepID=A0A0W4ZSL1_PNEJ7)

HSP 1 Score: 91.7 bits (226), Expect = 3.920e-21
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0
Query:   55 LETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            L  DLLNP  AVEA KHKLKRLVQSPNS+FMDVKCPGC+ ITT+FSHAQTVV
Sbjct:    5 LAVDLLNPIPAVEAQKHKLKRLVQSPNSFFMDVKCPGCFNITTIFSHAQTVV 56          
BLAST of Gchil6948.t1 vs. uniprot
Match: A0A6B2LVM0_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LVM0_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 3.920e-21
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0
Query:   52 MPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            MP +E+DLLNP+ AVE  KHK KR VQ PNSYFMDVKCPGC  ITTV+SHAQTVV
Sbjct:    1 MPLIESDLLNPNPAVEKTKHKKKRFVQGPNSYFMDVKCPGCLQITTVYSHAQTVV 55          
BLAST of Gchil6948.t1 vs. uniprot
Match: A0A0D7BBM7_9AGAR (40S ribosomal protein S27 n=2 Tax=Agaricomycetes TaxID=155619 RepID=A0A0D7BBM7_9AGAR)

HSP 1 Score: 90.5 bits (223), Expect = 1.050e-20
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0
Query:   55 LETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            L  DLLNP    E  KHKLKRLVQSPNSYFMDVKCPGC+ ITTVFSHAQTVV
Sbjct:    3 LAVDLLNPSLEAEKQKHKLKRLVQSPNSYFMDVKCPGCFAITTVFSHAQTVV 54          
BLAST of Gchil6948.t1 vs. uniprot
Match: G3H5C9_CRIGR (40S ribosomal protein S27 n=9 Tax=Euarchontoglires TaxID=314146 RepID=G3H5C9_CRIGR)

HSP 1 Score: 90.5 bits (223), Expect = 1.080e-20
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0
Query:   55 LETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            LE DLL+P   VE  KHK KRLVQSPNSYFMDVKCPGCY ITTVFSHAQTVV
Sbjct:    3 LEKDLLHPSPEVEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVV 54          
BLAST of Gchil6948.t1 vs. uniprot
Match: A0A425BQP5_9PEZI (40S ribosomal protein S27 (Fragment) n=1 Tax=Scytalidium sp. 3C TaxID=2487125 RepID=A0A425BQP5_9PEZI)

HSP 1 Score: 90.9 bits (224), Expect = 1.700e-20
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 0
Query:   40 AFRAFRLRYFDTMPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            A   F++   D  P L  DLLNP  A EA KHKLK LV +P S+FMDVKCPGC+ ITTVFSHAQTVV
Sbjct:   19 ALYVFQILAIDERPVLAVDLLNPSPAAEARKHKLKNLVPAPRSFFMDVKCPGCFTITTVFSHAQTVV 85          
BLAST of Gchil6948.t1 vs. uniprot
Match: A0A7S1EGU3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EGU3_HEMAN)

HSP 1 Score: 90.5 bits (223), Expect = 2.030e-20
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0
Query:   52 MPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            MP +E DLLNP+ A E  KHK+KRLV  PNSYFMDVKCPGC+ ITTVFSHAQTVV
Sbjct:   23 MPYMEDDLLNPNMANEKRKHKMKRLVPVPNSYFMDVKCPGCFNITTVFSHAQTVV 77          
BLAST of Gchil6948.t1 vs. uniprot
Match: M1VI49_CYAM1 (40S ribosomal protein S27 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VI49_CYAM1)

HSP 1 Score: 89.7 bits (221), Expect = 2.210e-20
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0
Query:   52 MPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            M  LE+DLL+P +  EA KHKLKRLVQSPNSYFMDVKC GC  ITT+FSHAQTVV
Sbjct:    1 MTLLESDLLHPPKESEARKHKLKRLVQSPNSYFMDVKCQGCLAITTIFSHAQTVV 55          
BLAST of Gchil6948.t1 vs. uniprot
Match: UPI00159C3B05 (40S ribosomal protein S27.2 n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI00159C3B05)

HSP 1 Score: 90.1 bits (222), Expect = 3.030e-20
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 0
Query:   50 DTMPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFSHAQTVV 106
            + MP  E DLLNP   VE  +HK KRLVQSPNSYFMDVKCPGCY ITTVFSHAQTVV
Sbjct:   24 EVMPLAE-DLLNPSPEVEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVV 79          
The following BLAST results are available for this feature:
BLAST of Gchil6948.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X6P2N4_PORUM1.670e-2587.27Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
M2VUX8_GALSU1.730e-2278.1840S ribosomal protein S27 n=1 Tax=Galdieria sulphu... [more]
A0A0W4ZSL1_PNEJ73.920e-2182.6940S ribosomal protein S27 n=2 Tax=Pneumocystis Tax... [more]
A0A6B2LVM0_9EUKA3.920e-2176.36Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A0D7BBM7_9AGAR1.050e-2080.7740S ribosomal protein S27 n=2 Tax=Agaricomycetes T... [more]
G3H5C9_CRIGR1.080e-2082.6940S ribosomal protein S27 n=9 Tax=Euarchontoglires... [more]
A0A425BQP5_9PEZI1.700e-2064.1840S ribosomal protein S27 (Fragment) n=1 Tax=Scyta... [more]
A0A7S1EGU3_HEMAN2.030e-2076.36Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
M1VI49_CYAM12.210e-2076.3640S ribosomal protein S27 n=1 Tax=Cyanidioschyzon ... [more]
UPI00159C3B053.030e-2077.1940S ribosomal protein S27.2 n=2 Tax=Hippoglossus T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023407Ribosomal protein S27, zinc-binding domain superfamilyGENE3D2.20.25.100coord: 55..114
e-value: 1.4E-26
score: 94.2
IPR000592Ribosomal protein S27PFAMPF01667Ribosomal_S27ecoord: 80..107
e-value: 2.7E-12
score: 46.2
IPR000592Ribosomal protein S27PANTHERPTHR1159440S RIBOSOMAL PROTEIN S27coord: 57..107
NoneNo IPR availablePANTHERPTHR11594:SF740S RIBOSOMAL PROTEIN S27-RELATEDcoord: 57..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..44
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 148..168
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 45..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 169..178
NoneNo IPR availableTMHMMTMhelixcoord: 147..169
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 80..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:219685..221065 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6948.t1Gchil6948.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004398_pilon 219685..221065 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6948.t1 ID=Gchil6948.t1|Name=Gchil6948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=179bp
MYDKILRAVDATSPASAAKKPLDVVASFSACVLRLDLLFAFRAFRLRYFD
TMPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFS
HAQTVVSAVSPPAAAPSTAPRFCAVSVRYATVNMPGMMNTSMARAARAII
IVLAAEVIVLVPWLYVALLQRIVSPPRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023407Ribosomal_S27_Zn-bd_dom_sf
IPR000592Ribosomal_S27
IPR011332Ribosomal_zn-bd