Gchil6948.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6948.t1
Unique NameGchil6948.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:219685..221065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703531.1
Preferred namerps27
PFAMsRibosomal_S27e
Max annot lvl2759|Eukaryota
KEGG koko:K02978
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000028,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue2.99e-23
EggNOG OGsCOG2051@1|root,KOG1779@2759|Eukaryota
Descriptionribosomal small subunit assembly
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6948Gchil6948Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 219685..221065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6948.t1Gchil6948.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 219685..221065 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6948.t1.start1Gchil6948.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 219685..219687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6948.t1.CDS1Gchil6948.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 219685..219843 +
Gchil6948.t1.CDS2Gchil6948.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 219939..220097 +
Gchil6948.t1.CDS3Gchil6948.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 220847..221065 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6948.t1.exon1Gchil6948.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 219685..219843 +
Gchil6948.t1.exon2Gchil6948.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 219939..220097 +
Gchil6948.t1.exon3Gchil6948.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 220847..221065 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6948.t1.intron1Gchil6948.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004398_pilon 219844..219938 +
Gchil6948.t1.intron2Gchil6948.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004398_pilon 220098..220846 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6948.t1.stop1Gchil6948.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 221063..221065 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6948.t1 ID=Gchil6948.t1|Name=Gchil6948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=179bp
MYDKILRAVDATSPASAAKKPLDVVASFSACVLRLDLLFAFRAFRLRYFD
TMPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFS
HAQTVVSAVSPPAAAPSTAPRFCAVSVRYATVNMPGMMNTSMARAARAII
IVLAAEVIVLVPWLYVALLQRIVSPPRF*
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spliced messenger RNA

>Gchil6948.t1 ID=Gchil6948.t1|Name=Gchil6948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00004398_pilon:219685..221065+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGACAAGATACTCCGCGCCGTCGACGCCACTTCGCCAGCTTCTGC
CGCAAAGAAGCCTTTGGACGTTGTCGCCTCTTTTTCCGCGTGCGTCTTGC
GTTTGGACTTGTTGTTTGCCTTTCGTGCCTTCCGCCTTCGCTACTTTGAC
ACCATGCCGGCTCTGGAGACTGATTTGCTGAACCCCGACCGAGCGGTAGA
GGCCAACAAGCACAAGTTGAAACGATTGGTACAATCGCCCAATTCGTACT
TTATGGACGTCAAGTGTCCTGGCTGTTATGTCATCACTACCGTTTTCTCG
CACGCGCAGACAGTAGTAAGTGCCGTCTCGCCGCCGGCCGCAGCGCCTTC
CACCGCCCCGCGCTTCTGCGCCGTCAGCGTCAGATACGCCACCGTCAACA
TGCCCGGCATGATGAACACCTCCATGGCGCGCGCCGCGCGCGCCATCATC
ATTGTACTTGCCGCTGAAGTCATCGTCTTGGTCCCTTGGCTTTATGTCGC
ACTCCTGCAGCGAATCGTTTCGCCCCCGCGCTTTTGA
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protein sequence of Gchil6948.t1

>Gchil6948.t1 ID=Gchil6948.t1|Name=Gchil6948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=179bp
MYDKILRAVDATSPASAAKKPLDVVASFSACVLRLDLLFAFRAFRLRYFD
TMPALETDLLNPDRAVEANKHKLKRLVQSPNSYFMDVKCPGCYVITTVFS
HAQTVVSAVSPPAAAPSTAPRFCAVSVRYATVNMPGMMNTSMARAARAII
IVLAAEVIVLVPWLYVALLQRIVSPPRF*
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mRNA from alignment at tig00004398_pilon:219685..221065+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6948.t1 ID=Gchil6948.t1|Name=Gchil6948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1381bp|location=Sequence derived from alignment at tig00004398_pilon:219685..221065+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACGACAAGATACTCCGCGCCGTCGACGCCACTTCGCCAGCTTCTGC
CGCAAAGAAGCCTTTGGACGTTGTCGCCTCTTTTTCCGCGTGCGTCTTGC
GTTTGGACTTGTTGTTTGCCTTTCGTGCCTTCCGCCTTCGCTACTTTGAC
ACCATGCCGGTATGTTGCCTTTCTCTGTCCCGCGAGCCGCGCGATCAGCT
ACCGTTTTCAGCTCTTCTGACGTTGCGGCCCATTGCTTTTGTGTGTGCGC
ACAGGCTCTGGAGACTGATTTGCTGAACCCCGACCGAGCGGTAGAGGCCA
ACAAGCACAAGTTGAAACGATTGGTACAATCGCCCAATTCGTACTTTATG
GACGTCAAGTGTCCTGGCTGTTATGTCATCACTACCGTTTTCTCGCACGC
GCAGACAGTAGTAGTATGTGGCGATTGCACCATGGTGTTGTGCCAACCCA
CTGGCGGAAAGGCCCGTCTCACCGAGGGATGTTCCTTCCGGAAGAAGGTT
GACTAAAATCACTTAACAGCCTGCCATTCGCAACTTGCGCTTTTTTGCTA
CGTGCGCTTTGTGCTTCCACCGCGCTGCTACCGTGTCGTCGTCGCCGTCA
TCGTGATGCACCGCGCGCACTTTCCCCGCCTAACCCTACGGGTTGGCAGA
GTGCGCCAGTGCACGACACTAAATCCAGCTAGCTACTCATCTGCGCTACG
CATCCGCGCTCGAGCCGTACCGCCGTACACAAGGCTGTTTTCACGTCTTG
CCACTATAAATTTCATTTATCTCTACTGTATCCCCCCCCTACCCACTAAC
GCCTTACCTGCCACCGTGCCCCCATCGCTCTCTCCTCCGCACGCTCCTCT
TCTCTCTGTCAGCCAGCGTTCATCCGCATCGCCTTCGTACCGCGCGTCGC
CCAGCGATCCAACCACCGTCCCCCACGCCGCGCCATGAACGTCTGCAACA
CCGATCCGCACAGCGCAACCAAGCCCGATCCAAACCTCGAGCTATTCCGC
GACATGGCCCTCACGCCGCTCATCACGGGCTTTGTACAGGGCTTCATGTC
CGTCGCGCTCAAGTACCGCCGCGAGAAGCGCCAACGCGCCCGTGTCGCCG
CTCTCGACGCAGCGTGCGCACCTTCGCCGCGCTCCTGACTCCGACTCGCC
ACCCGTGCTCAGAGTGCCGTCTCGCCGCCGGCCGCAGCGCCTTCCACCGC
CCCGCGCTTCTGCGCCGTCAGCGTCAGATACGCCACCGTCAACATGCCCG
GCATGATGAACACCTCCATGGCGCGCGCCGCGCGCGCCATCATCATTGTA
CTTGCCGCTGAAGTCATCGTCTTGGTCCCTTGGCTTTATGTCGCACTCCT
GCAGCGAATCGTTTCGCCCCCGCGCTTTTGA
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Coding sequence (CDS) from alignment at tig00004398_pilon:219685..221065+

>Gchil6948.t1 ID=Gchil6948.t1|Name=Gchil6948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00004398_pilon:219685..221065+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACGACAAGATACTCCGCGCCGTCGACGCCACTTCGCCAGCTTCTGC
CGCAAAGAAGCCTTTGGACGTTGTCGCCTCTTTTTCCGCGTGCGTCTTGC
GTTTGGACTTGTTGTTTGCCTTTCGTGCCTTCCGCCTTCGCTACTTTGAC
ACCATGCCGGCTCTGGAGACTGATTTGCTGAACCCCGACCGAGCGGTAGA
GGCCAACAAGCACAAGTTGAAACGATTGGTACAATCGCCCAATTCGTACT
TTATGGACGTCAAGTGTCCTGGCTGTTATGTCATCACTACCGTTTTCTCG
CACGCGCAGACAGTAGTAAGTGCCGTCTCGCCGCCGGCCGCAGCGCCTTC
CACCGCCCCGCGCTTCTGCGCCGTCAGCGTCAGATACGCCACCGTCAACA
TGCCCGGCATGATGAACACCTCCATGGCGCGCGCCGCGCGCGCCATCATC
ATTGTACTTGCCGCTGAAGTCATCGTCTTGGTCCCTTGGCTTTATGTCGC
ACTCCTGCAGCGAATCGTTTCGCCCCCGCGCTTTTGA
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