Gchil6740.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6740.t1
Unique NameGchil6740.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length609
Homology
BLAST of Gchil6740.t1 vs. uniprot
Match: A0A2V3IHL4_9FLOR (THO complex subunit 5-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHL4_9FLOR)

HSP 1 Score: 794 bits (2050), Expect = 2.010e-283
Identity = 401/603 (66.50%), Postives = 484/603 (80.27%), Query Frame = 0
Query:    1 MANSIAADENNVSLLLEVSNNAINVLRGSILAASRDMILHPTTSSIENGGPESVQSFESRLRDASRKMLGQFVALKSSHDLLIKQVDKARKESRKEQDKLLHARSRFDNLKYEMKMLQDEIELCGTGPSTHIKKLESVLPNIHLSPKGEDDGPSAHQQTMDVLSNELLRRKAAQKQVDAVLDDVRKKLKELDDTRSALRGLPNLLGSLESDLQPLRNLIQRKPVIYKASPTIPQAQQLPTPLYVLARQAMGYRDSFGDLSVSILGESPKRPIRKDLYAMHPMRVQIDIHCNGIEQALRVKFGYHVHLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPSNAYLEKGSFKFDISKAHGCRPFVWANVVCGISSMLPVESHRARTSDESNFAQWPSRAMETSGHLRFKDVCETLRNRLKSIVSLKKQIEMLLAKRLPTLPVDIGTTIEPKSKLEDFVKLPPQDWAGDERLAREGTGGRYTEVWCMVISREALRINCMIGIEPDYPLGPPVFRLVCDKGSEFVSEMDVLDMERCVNELSDCEKLKGHEEVLLGAQIIALLSCLDRVYNMCFGEEKEGIDTQSRTMNGRTRSKRSSMMS 603
            M + ++   ++V L LE + +AI+ +R SI+ +S+  I   +T+          QS +   RD SRK+LG F+ LK+SHDLLIKQVD+ARK SR EQDKLL+ARSR DNL YE KMLQDEI LC TGP  H++KL+  +P+   S + +DDG  AHQ+TM+ LS ELL+RKAAQK+VD++L   +KK KELDDT+SALR LPNLL SL +DL+PLR L Q KP+   ++  + QAQ LP PLYVLARQA+GY +++G+LSVSI GE  K+ +RKD+YA HPMRVQID+ C GI Q+LRVKFGYH +L+IVSVSSVIVADGTETPSYPTKELQMLYP+DFGEESP+  N+YLE+GSF+FD++KAHGCRPFVWANVVCGI+SMLP ES+ AR  +ES FA+WP  AME SGH+RFKDVCETLR RLKSIVSLKKQIE+LL+KRLP LP DIG T EPKSKLEDFVKLPPQDWAGDERLAREGTGGRYTEVWCMVISR++LRINCMIGIEPDYP GPPVFRLVCDKGSE  SE DVLD+ERCVNE+S  E +KG EE+LLGAQI ALLS LDR+Y++    E    + ++  +NGR RSKR+S++S
Sbjct:    1 MTSCLSKLSDDVRLSLEKAQSAISAIRDSIMWSSKTQIGFDSTAK--------EQSSQDEFRDMSRKLLGHFITLKTSHDLLIKQVDEARKNSRIEQDKLLNARSRLDNLMYETKMLQDEINLCETGPQAHVQKLDVPIPDF--SSQSDDDGARAHQRTMEALSEELLKRKAAQKEVDSILQVAKKKRKELDDTKSALRDLPNLLSSLANDLKPLRALGQNKPMAQSSNTLLSQAQHLPAPLYVLARQAVGYSEAYGNLSVSITGEGSKKQVRKDIYAQHPMRVQIDVLCEGIPQSLRVKFGYHTNLHIVSVSSVIVADGTETPSYPTKELQMLYPYDFGEESPSAGNSYLERGSFRFDVTKAHGCRPFVWANVVCGITSMLPTESYNARLENESQFAKWPVTAMELSGHMRFKDVCETLRTRLKSIVSLKKQIELLLSKRLPVLPADIGLTTEPKSKLEDFVKLPPQDWAGDERLAREGTGGRYTEVWCMVISRDSLRINCMIGIEPDYPFGPPVFRLVCDKGSEIASEKDVLDLERCVNEVSTSENVKGREELLLGAQITALLSYLDRLYDVSSNLEDGDSEGRAMGVNGRARSKRASILS 593          
BLAST of Gchil6740.t1 vs. uniprot
Match: R7QLX8_CHOCR (THO complex subunit 5 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLX8_CHOCR)

HSP 1 Score: 293 bits (749), Expect = 1.040e-87
Identity = 177/515 (34.37%), Postives = 280/515 (54.37%), Query Frame = 0
Query:   61 LRDASRKMLGQFVALKSSHDLLIKQVDKARKESRKEQDKLLHARSRFDNLKYEMKMLQDEIELCGTGPSTHIKKLESVLPNIHLSPKGEDDGPSAHQQTMDVLSNELLRRKAAQKQVDAVLDDVRKKLKELDDTRSALRGLPNLLGSLESDLQPLRNLIQRKPVIYKASPTIPQAQQLPTPLYVLARQAMGYRDSFGD-LSVSILGESPKRPIRKDLYAMHPMRVQIDIHCN---GIEQALRVKFGYHVHLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPSNAYLEKGSFKFDISKAHGCRPFVWANVVCGISSMLPVESHRARTSDESNFAQWPSRAMETSGHLRFKDVCETLRNRLKSIVSLKKQIEMLLAKRLPTLPVDIGTTIEPKSKLEDFVKLPPQDWAGDERLAREGTGGRYTEVWCMVISREALRINCMIGIEPDYPLGPPVFRLVCDKGSEFVSEMDVLDMERCVNELSDCEKLKGHEEVLLGAQIIALLSCLDRV 571
            +R  S+K+L   V  K +HD +I++VD AR+ S+ +   L   R R   L YE  +L+ +I+      +  + K+   LP+       E++    H  T+  L  EL +R+  + +VD ++   ++K  +L   +  LR LP  + +L + ++P+R L++    +  + P + Q + LP PLYVL R+A  +R  F   L++S+L E  K    + +Y  HP  V++DI      G    L+V F +H  L++V+V+S I      +     K LQ+L+P+D GE SPNP N++LE G+F FD+SKA G RPFVWAN++CG+  +      R  T +E   A WP+ A     H+RFK+   +L+NRL   V+L+KQ+E L AKR+P    D+G  +EP+++LE F K   +D      L  +     + EVW M +    L + C +GI  +YP G P FRL  +K    +SE D+L +E+ VN       L+   E+LL  QI+ LL  +D++
Sbjct:   44 IRRPSQKILAYTVMAKVAHDAIIRKVDSARRNSQADIAMLQKLRQRSACLGYERMLLERQIDAQRAVKAPTVDKVSVKLPHPAPQNASEEESMDVHIDTIKALCAELQKRQRVRDEVDGLVKRTKRKRDQLVTMKDDLRSLPRAVATLRNAIEPVRKLLKVGEELAASPPELAQIRLLPVPLYVLTREAFAFRTMFPKILNISLLEEQAKL---EGVYRPHPRLVRMDIQAGEHIGAGVCLQVFFRFHPELHVVTVTSRIANSEQPSAKMDGKLLQLLFPYDVGETSPNPCNSHLENGAFSFDVSKAGGARPFVWANLLCGLPCL-----ERFDTVNEIVGAGWPTEAAGHEAHIRFKETVLSLQNRLCMEVALRKQLEALQAKRMPIQAGDLGFMVEPEARLEMFAKCKSRDEESKNGLGGDNVNVMFREVWEMRVWSGELTMGCDVGIASNYPTGTPCFRLKLEKEQRDISEADMLRLEQKVNMYKMEGDLEDKRELLLSGQILTLLEGVDKL 550          
BLAST of Gchil6740.t1 vs. uniprot
Match: M2WT23_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WT23_GALSU)

HSP 1 Score: 140 bits (353), Expect = 3.460e-31
Identity = 106/363 (29.20%), Postives = 182/363 (50.14%), Query Frame = 0
Query:  238 LPTPLYVLARQAMGYRDSFGD-----LSVSILGE-----------SPKRPIRKDLYAMHPMRVQIDIHC-------NGIEQALRVKFGYHVHLNIVSVS-SVIVADGTETPSYPTKELQMLYPFDFGEESPNPSNAYLEKGSFKFDISKAHGCRPFVWANVVCGISSMLPVESHRARTSDESNFAQWPSRAMETSGHLRFKDVCETLRNRLKSIVSLKKQIEMLLAKRLPTLPVDIGTTIEPKSKLEDFVKLPPQDWAGDERLAREGTGGRY-----TEVWCMVISREALRINCMIGIEPDYPLGPPVFRLVCDKGSEFVSEMDVLDMERCVNELSDCEKLKGHE--EVLLGAQIIALLSCLD 569
            LP PLYVLARQA  ++ +F         + I+G+           S +    ++LY MHP++VQ+++         + +++ + V F Y + L IV VS S   +DG    +  T++   L+P D G  SPNP+N YLE+G F+F  SK  G RPF+WA ++CG+    P E + + ++ ++   +W   A+  S H+    V + L  R   + SL  Q+  L    +P    +     +P+S+L+ + +L       ++  A   T   +     T  + + I  E++ +  ++ + PDYPL  P + L C +G   + + D+ D+ER +   +D E L+G+   E LL  Q+  L +C+D
Sbjct:  236 LPFPLYVLARQAYAFQHTFQSEQHLHFRMDIVGDTVAAESICDAFSTRWKEHENLYQMHPLQVQLELGGQPKGALDSTLQKTVTVTFSYLLCLEIVVVSCSGNASDG----NLITEQFAFLFPGDDGSHSPNPTNHYLEEGKFQFQPSKVGGARPFIWAQIICGLG--FPFELNLSSSTKDAK--EWLQNALNYSKHIVLGAVIKALVARNYFLQSLSTQLVSLQRLIVPVNAKEAQLPGDPRSELKSWSEL-----IDNQEFASGPTNSSFYSLTGTRKFLLEIQSESIHLRGLVAVCPDYPLTSPYWSLKCIRGP--LQDSDLRDIERELCSFTD-ENLEGNALGENLLSIQVKKLQACVD 582          
BLAST of Gchil6740.t1 vs. uniprot
Match: UPI001F047A1E (THO complex subunit 5 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F047A1E)

HSP 1 Score: 77.8 bits (190), Expect = 2.940e-11
Identity = 132/622 (21.22%), Postives = 240/622 (38.59%), Query Frame = 0
Query:   59 SRLRDASRKMLGQFVALKS---SHDLLIKQVDKARKESRKEQDKLLHARSRFDNLKYEMKMLQDEIELC----GTGPSTHIKKLESVLPNIHLSPKGEDDGPSAHQQTMDVLSNELLRRKAAQKQVDAVLDDVRKKLKELDDTRSALRGLPNLLGSLESDLQPLRNLI----QRKPVIYKASPTIPQAQQLPTPLYVLARQAMGYRDSFG-DLSVSILG--------------------------------------ESPKRPIR-------------KDLYAMHPMRVQIDIHCNGIEQALRVKFGYHVHLNIVSVSSVIVADGTETPSY-------PTKELQMLYPFDFGEESPNPSNAY-LEK-GSFKFDISKAHGCRPFVWANVVCGISSMLPVESHRARTSDESNFAQWPSRAMETSGHLRFKDVCETLRNRLKSIVSLKKQIEMLLAKRLPT-------LPVDIGTTIEPKSKL--EDFVKLPPQDWAGDERLAREGTGGRYTEVWCMVISREALRINCMIGIEPDYPLGPPVFRLVCDKGSEFVSEMDVLDMERCVNELSDCEKLKGHEEVLLGAQIIALLSCLDRVYNMCFGEEKEGIDTQS----RTMNGRTR 595
            + L +   + L  FV LK+   S   L +Q   AR ++ + + K+        NL YE+  L+ EI  C           +   E +   +    K E      H+  +  L  EL  RK+      + +   +    E+ +    L  L   L ++     P+++ +    + K + Y+       A+ LP PLYVL  Q+M Y+++   +L+  I+G                                      E PK+                K     HP++VQ++I C G  ++ ++ F Y   LNI++VS  I+    E   +       P   L  L+P DFG+ +PNP+N + L K G       K +  RP+ W   +CG+    P    ++      N +   S    T          +++++R+ + + L KQ+  L +  +P         PV   +T+E  + +   ++ +LP   +  ++ L    T      ++    S E +++   + +  DYP+  P+F++       +V+   V  +E  VN   +    +   + +L  Q+  +  C D V+N     EK  +        R   GR R
Sbjct:   91 TELENLRMQCLLSFVTLKNCNRSAQFLNRQ---ARDDTLEAKQKVDGLHLELQNLLYEITHLKKEINKCLQFKSKDQEIDLISEEELKQELE-KMKDEKLSEDPHKLMLARLDWELKERKSLTAIKQSYVTKKKTMAHEIQEKNDFLNSLEPQLKTILQATSPIQDFLGMQLESKRIKYQT------AKFLPRPLYVLFVQSMAYQEACDPNLNTEIIGDVEAAKAQLEDKAGIPGVVDVELDENVDKTEEDEVEVDELPKKRQHRRTTEELCQEEKVKTALKQHPLQVQLEITCKGDIKS-KILFCYIPLLNIITVSLDILCSENEKLKFSGRSLLSPDSVLTCLFPEDFGDVTPNPTNHHQLNKLGIENVTFGKLNIGRPYKWVQKLCGLE--FPTSDSKSNEIPTVNSSLSASHMERT---------VKSIKSRILTRILLTKQLISLESLSIPLSEEGRHLFPVKSLSTLESWNVITTSEYSELP---FVENKTLIESITENDM--LFLATFSCENVKLKAAVIVPSDYPVRTPLFKMAVSSNGSYVNNDYVRAIETEVNVFYEEMCKEDSRDNILSNQLRRVQMCFD-VFNDTNASEKHDMQNHEFLIMRVKRGRDR 684          
The following BLAST results are available for this feature:
BLAST of Gchil6740.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IHL4_9FLOR2.010e-28366.50THO complex subunit 5-like n=1 Tax=Gracilariopsis ... [more]
R7QLX8_CHOCR1.040e-8734.37THO complex subunit 5 homolog n=1 Tax=Chondrus cri... [more]
M2WT23_GALSU3.460e-3129.20Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
UPI001F047A1E2.940e-1121.22THO complex subunit 5 homolog n=1 Tax=Xenia sp. Ca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 181..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 587..608
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 586..608
IPR019163THO complex, subunit 5PFAMPF09766FmiP_Thoc5coord: 75..267
e-value: 1.4E-20
score: 73.9
coord: 271..379
e-value: 1.0E-15
score: 58.0
IPR019163THO complex, subunit 5PANTHERPTHR13375FMS INTERACTING PROTEINcoord: 56..268
coord: 272..604

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:704745..706571 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6740.t1Gchil6740.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 704745..706571 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6740.t1 ID=Gchil6740.t1|Name=Gchil6740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=609bp
MANSIAADENNVSLLLEVSNNAINVLRGSILAASRDMILHPTTSSIENGG
PESVQSFESRLRDASRKMLGQFVALKSSHDLLIKQVDKARKESRKEQDKL
LHARSRFDNLKYEMKMLQDEIELCGTGPSTHIKKLESVLPNIHLSPKGED
DGPSAHQQTMDVLSNELLRRKAAQKQVDAVLDDVRKKLKELDDTRSALRG
LPNLLGSLESDLQPLRNLIQRKPVIYKASPTIPQAQQLPTPLYVLARQAM
GYRDSFGDLSVSILGESPKRPIRKDLYAMHPMRVQIDIHCNGIEQALRVK
FGYHVHLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPSNAY
LEKGSFKFDISKAHGCRPFVWANVVCGISSMLPVESHRARTSDESNFAQW
PSRAMETSGHLRFKDVCETLRNRLKSIVSLKKQIEMLLAKRLPTLPVDIG
TTIEPKSKLEDFVKLPPQDWAGDERLAREGTGGRYTEVWCMVISREALRI
NCMIGIEPDYPLGPPVFRLVCDKGSEFVSEMDVLDMERCVNELSDCEKLK
GHEEVLLGAQIIALLSCLDRVYNMCFGEEKEGIDTQSRTMNGRTRSKRSS
MMSESAVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019163THO_Thoc5