Gchil6704.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6704.t1
Unique NameGchil6704.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length782
Homology
BLAST of Gchil6704.t1 vs. uniprot
Match: A0A2V3ILV3_9FLOR (Chromo domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILV3_9FLOR)

HSP 1 Score: 615 bits (1585), Expect = 1.860e-208
Identity = 372/788 (47.21%), Postives = 457/788 (57.99%), Query Frame = 0
Query:    1 MGATLSALIHRLEQQTAFFDSKPDILAWQVREAIRTEFFKIVYPTPPTSELCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKMASGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVMA------PSPQQXXXXXXXXRRATAQKRPRQSRPRARRASHPTHGASPPPNASGVMLPQRPPLPQMHRGTSFS-APSPPSTPMRSSPQLVVNAQQSYVPAGAHSSTPPQTPQPTPARVSNVVARLARQEISGVFVPKELLTFAPPPRARLCTSLLSNASGSLQRAFDVGSADVLASLYRVKNLVLVKRLLARKFEGDNVLYYVVWGGGGVKNGSWEKREALMKDVPAMVRQFDVKHPMLPEKVNLHGERRPAGWHSGLDGRVNSNRASCQQSQVGGSEAMSGARGLGGTGGXXXXXDSAVGIDGTMSGGGEIEHRVSTTTSVGRASSTTEVASSGGHGGGGVSGTKQIRHYVDDLTGEEIPSWVDTPIVELNICGMILQIRRPDEAVLHNDATSAVRDTKKRQTRFKQENIVVGERLFPLSKSEAKAAVEASVRVHRQYNRLPILFPRGIGRVSAGDHGAAFSVEDAQRAPACWEGYLSSVGLRCVDFERELAPHMPSAEEWVRARVARTREELIAATATEHRERARRVLREWFRHTGAPPPAQLFRDG-VRGGGASTGAXXXXXXXXXXXXXXXXXXXXPAAKRRRVGREEGA-VGRAGAPGTRDARVEAALRAAARREGRXXXXGRGDEEAGEHRWFDEIWACWRA 779
            MGATLSAL  RLEQQTAFFD+KPDILAWQVREAIRTEFFKI YPTPP++ LCALVQ+CEQLLQRY LPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKMA+GITVTEA+LHLDGPDGGAFQWVQTHALTPLAPLLAAV A      P P       XXX                                        P L   H  T    AP+ P     ++  + V      +P  A S+      QP PA VSNV ARLA+Q+ SGV+VP ELLT+ PPPRAR+C ++++ ASG ++RA DVGS  V+++++RV+ L  V+RL AR+   D V Y+VVW G  + +GSWEKR+AL++DVPA+VR FDV+HP+L E   L                                                                                               G  G ++ + +VDD++G  IP+WVD+PIVEL   GM+LQIRR + AVLHNDA SAVRDT++RQ R K E    G RLF L++SEA+AAVEASVRVHRQ+ RLPI+FPRG+GRV+  D G AFSV DA RAPACWEG L+ VG++CV F+R L PH+ +A+E ++ RVA+  +E+  A+  EHRERAR+V+RE FRH+GAPPP +LFR G VR                                 RR G  +G  +G A +  +RD R+E ALRA  +  G                W+DE+W CWR+
Sbjct:   65 MGATLSALQLRLEQQTAFFDAKPDILAWQVREAIRTEFFKIHYPTPPSAALCALVQSCEQLLQRYRLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKMAAGITVTEALLHLDGPDGGAFQWVQTHALTPLAPLLAAVQAQPQLHHPVPHPVSAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCAPSLSATHPDTELHPAPTVPPPSAAAAGDVAV-----LMPTSAPST------QPAPAPVSNVAARLAKQDASGVYVPDELLTYVPPPRARICDTVMTGASGCVRRALDVGSGGVVSAVHRVRQLAAVQRLAARQIRDDGVYYFVVWSGRALSDGSWEKRDALLRDVPALVRMFDVRHPLLEEHETLQR---------------------------------------------------------------------------------------------GTGGKEEGKEFVDDVSGLRIPAWVDSPIVELTFSGMVLQIRRGEGAVLHNDAASAVRDTRRRQARLKSEAAAAGGRLFALTRSEARAAVEASVRVHRQHCRLPIVFPRGVGRVAVADDGIAFSVADALRAPACWEGALACVGMKCVRFDRVLKPHLLTADEALKTRVAKASDEVSLASRLEHRERARQVVREAFRHSGAPPPRELFRGGEVR----------------IPPQISCSKRVSACGVVRRNGESDGVGLGIAKSWRSRDQRIETALRALRKNGG------------ASQGWYDEVWGCWRS 720          
BLAST of Gchil6704.t1 vs. uniprot
Match: R7Q7D9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7D9_CHOCR)

HSP 1 Score: 187 bits (475), Expect = 1.280e-49
Identity = 103/204 (50.49%), Postives = 134/204 (65.69%), Query Frame = 0
Query:  482 RHYVDDLTGEEIPSWVDTPIVELNICGMILQIRRPDEAVLHNDATSAVRDTKKRQTRFKQENIVVGERLFPLSKSEAKAAVEASVRVHRQYNRLPILFPRGIGRVSAGDHGAAFSVEDAQRAPACWEGYLSSVGLRCVDFERELAPHMPSAEEWVRARVARTREELIAATATEHRERARRVLREWFRH-TGAPPPAQLFRDGVR 684
            R +VDD++G EIP +VD+PI+EL   GM+L IR+  E  LHNDA + +RD KKRQ+RFKQENI   E+LF L+KSEA+ A++AS+R H+ +NR PI FPRG+GR    D G  FS +     P   E YL  +GLR   FER+L P MP+ +   R RVA +  +     ATEHRERAR +LR  +RH   A  P+ LFR+G R
Sbjct:   51 RKFVDDISGVEIPGYVDSPILELGFAGMVLHIRQSREYSLHNDALAVIRDYKKRQSRFKQENIRSAEKLFLLTKSEARMALDASLRSHKIHNRYPIPFPRGLGRAVPLDTGVPFSKDVVSMGPPSLESYLIGLGLRPKHFERDLPPLMPTLDAKTRRRVAISARDASFERATEHRERARLLLRNAYRHGNNANAPSMLFREGKR 254          
The following BLAST results are available for this feature:
BLAST of Gchil6704.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ILV3_9FLOR1.860e-20847.21Chromo domain-containing protein n=1 Tax=Gracilari... [more]
R7Q7D9_CHOCR1.280e-4950.49Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..467
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 403..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..248
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 317..377
score: 9.028001
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 316..373

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:417414..419759 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6704.t1Gchil6704.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 417414..419759 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6704.t1 ID=Gchil6704.t1|Name=Gchil6704.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=782bp
MGATLSALIHRLEQQTAFFDSKPDILAWQVREAIRTEFFKIVYPTPPTSE
LCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKM
ASGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVMAPSPQQPPPP
RPKRRRATAQKRPRQSRPRARRASHPTHGASPPPNASGVMLPQRPPLPQM
HRGTSFSAPSPPSTPMRSSPQLVVNAQQSYVPAGAHSSTPPQTPQPTPAR
VSNVVARLARQEISGVFVPKELLTFAPPPRARLCTSLLSNASGSLQRAFD
VGSADVLASLYRVKNLVLVKRLLARKFEGDNVLYYVVWGGGGVKNGSWEK
REALMKDVPAMVRQFDVKHPMLPEKVNLHGERRPAGWHSGLDGRVNSNRA
SCQQSQVGGSEAMSGARGLGGTGGGGAASDSAVGIDGTMSGGGEIEHRVS
TTTSVGRASSTTEVASSGGHGGGGVSGTKQIRHYVDDLTGEEIPSWVDTP
IVELNICGMILQIRRPDEAVLHNDATSAVRDTKKRQTRFKQENIVVGERL
FPLSKSEAKAAVEASVRVHRQYNRLPILFPRGIGRVSAGDHGAAFSVEDA
QRAPACWEGYLSSVGLRCVDFERELAPHMPSAEEWVRARVARTREELIAA
TATEHRERARRVLREWFRHTGAPPPAQLFRDGVRGGGASTGAGRGAGMGR
GTATTMGAGTTMPAAKRRRVGREEGAVGRAGAPGTRDARVEAALRAAARR
EGREGRKGRGDEEAGEHRWFDEIWACWRARV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromo-like_dom_sf