Gchil6704.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6704.t1
Unique Name	Gchil6704.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	782

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004416_pilon	contig	tig00004416_pilon:417414..419759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6704	Gchil6704	Gracilaria chilensis NLEC103_M9 male	gene	tig00004416_pilon 417414..419759 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6704.t1.start1	Gchil6704.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004416_pilon 417414..417416 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6704.t1.CDS1	Gchil6704.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004416_pilon 417414..419759 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6704.t1.exon1	Gchil6704.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004416_pilon 417414..419759 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6704.t1.stop1	Gchil6704.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004416_pilon 419757..419759 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6704.t1	Gchil6704.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004416_pilon 417414..419759 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004416_pilon:417414..419759+
coding sequence from alignment at tig00004416_pilon:417414..419759+

mRNA sequence

>Gchil6704.t1 ID=Gchil6704.t1|Name=Gchil6704.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=782bp
MGATLSALIHRLEQQTAFFDSKPDILAWQVREAIRTEFFKIVYPTPPTSE
LCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKM
ASGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVMAPSPQQPPPP
RPKRRRATAQKRPRQSRPRARRASHPTHGASPPPNASGVMLPQRPPLPQM
HRGTSFSAPSPPSTPMRSSPQLVVNAQQSYVPAGAHSSTPPQTPQPTPAR
VSNVVARLARQEISGVFVPKELLTFAPPPRARLCTSLLSNASGSLQRAFD
VGSADVLASLYRVKNLVLVKRLLARKFEGDNVLYYVVWGGGGVKNGSWEK
REALMKDVPAMVRQFDVKHPMLPEKVNLHGERRPAGWHSGLDGRVNSNRA
SCQQSQVGGSEAMSGARGLGGTGGGGAASDSAVGIDGTMSGGGEIEHRVS
TTTSVGRASSTTEVASSGGHGGGGVSGTKQIRHYVDDLTGEEIPSWVDTP
IVELNICGMILQIRRPDEAVLHNDATSAVRDTKKRQTRFKQENIVVGERL
FPLSKSEAKAAVEASVRVHRQYNRLPILFPRGIGRVSAGDHGAAFSVEDA
QRAPACWEGYLSSVGLRCVDFERELAPHMPSAEEWVRARVARTREELIAA
TATEHRERARRVLREWFRHTGAPPPAQLFRDGVRGGGASTGAGRGAGMGR
GTATTMGAGTTMPAAKRRRVGREEGAVGRAGAPGTRDARVEAALRAAARR
EGREGRKGRGDEEAGEHRWFDEIWACWRARV*

spliced messenger RNA

>Gchil6704.t1 ID=Gchil6704.t1|Name=Gchil6704.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2346bp|location=Sequence derived from alignment at tig00004416_pilon:417414..419759+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCACCCTCAGCGCCCTCATCCACAGATTGGAGCAGCAAACCGC
ATTCTTCGACTCCAAGCCCGACATTCTTGCCTGGCAGGTGCGCGAGGCCA
TTCGCACCGAGTTTTTCAAGATCGTGTACCCCACGCCGCCCACCTCCGAG
TTGTGCGCGCTCGTGCAGAACTGCGAGCAGCTTTTGCAACGTTATCATCT
ACCGCACCGTCCCTTCTTCTTCCCCGGCGGCCGTGTTGCTGTTCCTACCG
AGGCGGGCTCCCGTCGCGCTGCCACATCGTTGCAGCTTCGCTTCAAAATG
GCTTCTGGTATCACCGTCACCGAGGCTATGCTTCATTTGGACGGGCCCGA
CGGCGGCGCCTTTCAATGGGTGCAGACCCATGCACTCACCCCGTTAGCAC
CATTATTGGCTGCCGTCATGGCCCCGTCGCCTCAACAGCCACCGCCACCT
CGTCCGAAGCGTCGTCGTGCCACCGCTCAAAAGCGCCCGCGCCAGTCGCG
ACCGCGTGCAAGACGTGCCTCGCACCCGACGCACGGCGCATCACCTCCGC
CGAATGCATCGGGAGTCATGCTGCCGCAGCGCCCGCCCTTGCCGCAAATG
CATCGCGGCACATCTTTTTCCGCGCCGTCTCCGCCGTCCACGCCGATGCG
ATCGTCGCCGCAGCTTGTTGTGAACGCGCAGCAGTCGTATGTGCCTGCTG
GAGCACACTCATcgacaccgccgcagacgccgcagccaacgccggcgcGC
GTGTCCAACGTTGTAGCACGCTTGGCGCGTCAGGAGATTTCGGGCGTATT
TGTGCCCAAGGAGCTTCTTACGTTTGCGCCGCCGCCGAGGGCGAGACTGT
GCACCAGCTTGCTGTCCAACGCATCGGGGTCGTTGCAGCGCGCATTTGAC
GTTGGATCAGCTGACGTGTTGGCGTCGCTGTACCGCGTGAAGAATCTGGT
GTTGGTTAAGCGTCTGCTTGCGCGCAAGTTTGAGGGTGACAATGTGCTGT
ACTACGTGGTGTGGGGTGGTGGCGGTGTGAAGAATGGTAGCTGGGAGAAA
CGGGAGGCGCTAATGAAAGACGTGCCGGCCATGGTACGGCAGTTTGACGT
GAAGCACCCCATGTTGCCAGAGAAGGTAAATCTGCACGGAGAACGGCGGC
CAGCCGGGTGGCATTCAGGGTTGGACGGTAGGGTTAATAGCAACCGCGCG
AGCTGCCAGCAGTCACAGGTGGGCGGCAGTGAAGCAATGAGTGGGGCTCG
CGGTTTGGGTGGCACTGGTGGGGGTGGAGCAGCGTCAGACAGCGCTGTAG
GCATTGATGGCACGATGAGTGGTGGTGGGGAGATTGAGCATAGGGTATCG
ACGACGACTTCCGTCGGTCGCGCGAGCTCGACTACAGAAGTGGCAAGCAG
TGGAGGGCATGGTGGTGGGGGAGTGTCTGGCACGAAGCAAATTAGACATT
ACGTGGACGATTTGACTGGCGAGGAGATTCCGAGCTGGGTGGACACGCCG
ATTGTGGAGCTAAATATCTGCGGAATGATCTTACAGATTCGTCGCCCGGA
TGAGGCGGTGCTACACAATGACGCAACGTCAGCAGTGCGGGACACGAAGA
AGCGGCAGACACGGTTCAAGCAGGAGAACATTGTGGTGGGTGAGCGGCTG
TTCCCGCTGAGCAAATCGGAGGCGAAGGCGGCGGTTGAGGCGAGCGTGCG
GGTGCACCGGCAGTACAACCGACTGCCGATCCTGTTTCCACGCGGGATCG
GTCGCGTATCGGCGGGGGACCACGGCGCTGCGTTCTCGGTGGAGGACGCG
CAGCGCGCGCCGGCGTGTTGGGAAGGATACCTCAGCAGTGTGGGGCTACG
GTGTGTGGATTTTGAGCGCGAGCTAGCGCCGCATATGCCGAGCGCGGAGG
AGTGGGTGCGGGCGCGCGTGGCGCGCACGCGCGAGGAGTTGATTGCAGCG
ACGGCGACGGAGCACCGCGAGCGCGCGCGGAGGGTGCTGCGCGAGTGGTT
TCGGCACACTGGCGCGCCGCCGCCGGCGCAATTGTTTCGCGACGGGGTGC
GCGGCGGCGGGGCAAGCACGggggctgggagaggggcagggatggggagg
gggacggcgacgacgatgggagcggggaCTACGATGCCCGCGGCGAAACG
GCGGCGCGTGGGGCGGGAGGAGGGCGCGGTGGGGCGTGCGGGCGCGCCGG
GAACGCGCGACGCGCGTGTGGAGGCGGCGCTGCGCGCGGCGGCGCGACGA
GAGGGGCGTGAGGGGCGCAAAGGGCGCGGGGACGAAGAAGCGGGTGAGCA
TCGCTGGTTCGACGAAATCTGGGCTTGCTGGCGTGCGCGCGTGTAG

protein sequence of Gchil6704.t1

>Gchil6704.t1 ID=Gchil6704.t1|Name=Gchil6704.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=782bp
MGATLSALIHRLEQQTAFFDSKPDILAWQVREAIRTEFFKIVYPTPPTSE
LCALVQNCEQLLQRYHLPHRPFFFPGGRVAVPTEAGSRRAATSLQLRFKM
ASGITVTEAMLHLDGPDGGAFQWVQTHALTPLAPLLAAVMAPSPQQPPPP
RPKRRRATAQKRPRQSRPRARRASHPTHGASPPPNASGVMLPQRPPLPQM
HRGTSFSAPSPPSTPMRSSPQLVVNAQQSYVPAGAHSSTPPQTPQPTPAR
VSNVVARLARQEISGVFVPKELLTFAPPPRARLCTSLLSNASGSLQRAFD
VGSADVLASLYRVKNLVLVKRLLARKFEGDNVLYYVVWGGGGVKNGSWEK
REALMKDVPAMVRQFDVKHPMLPEKVNLHGERRPAGWHSGLDGRVNSNRA
SCQQSQVGGSEAMSGARGLGGTGGGGAASDSAVGIDGTMSGGGEIEHRVS
TTTSVGRASSTTEVASSGGHGGGGVSGTKQIRHYVDDLTGEEIPSWVDTP
IVELNICGMILQIRRPDEAVLHNDATSAVRDTKKRQTRFKQENIVVGERL
FPLSKSEAKAAVEASVRVHRQYNRLPILFPRGIGRVSAGDHGAAFSVEDA
QRAPACWEGYLSSVGLRCVDFERELAPHMPSAEEWVRARVARTREELIAA
TATEHRERARRVLREWFRHTGAPPPAQLFRDGVRGGGASTGAGRGAGMGR
GTATTMGAGTTMPAAKRRRVGREEGAVGRAGAPGTRDARVEAALRAAARR
EGREGRKGRGDEEAGEHRWFDEIWACWRARV*

mRNA from alignment at tig00004416_pilon:417414..419759+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6704.t1 ID=Gchil6704.t1|Name=Gchil6704.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2346bp|location=Sequence derived from alignment at tig00004416_pilon:417414..419759+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCCACCCTCAGCGCCCTCATCCACAGATTGGAGCAGCAAACCGC
ATTCTTCGACTCCAAGCCCGACATTCTTGCCTGGCAGGTGCGCGAGGCCA
TTCGCACCGAGTTTTTCAAGATCGTGTACCCCACGCCGCCCACCTCCGAG
TTGTGCGCGCTCGTGCAGAACTGCGAGCAGCTTTTGCAACGTTATCATCT
ACCGCACCGTCCCTTCTTCTTCCCCGGCGGCCGTGTTGCTGTTCCTACCG
AGGCGGGCTCCCGTCGCGCTGCCACATCGTTGCAGCTTCGCTTCAAAATG
GCTTCTGGTATCACCGTCACCGAGGCTATGCTTCATTTGGACGGGCCCGA
CGGCGGCGCCTTTCAATGGGTGCAGACCCATGCACTCACCCCGTTAGCAC
CATTATTGGCTGCCGTCATGGCCCCGTCGCCTCAACAGCCACCGCCACCT
CGTCCGAAGCGTCGTCGTGCCACCGCTCAAAAGCGCCCGCGCCAGTCGCG
ACCGCGTGCAAGACGTGCCTCGCACCCGACGCACGGCGCATCACCTCCGC
CGAATGCATCGGGAGTCATGCTGCCGCAGCGCCCGCCCTTGCCGCAAATG
CATCGCGGCACATCTTTTTCCGCGCCGTCTCCGCCGTCCACGCCGATGCG
ATCGTCGCCGCAGCTTGTTGTGAACGCGCAGCAGTCGTATGTGCCTGCTG
GAGCACACTCATcgacaccgccgcagacgccgcagccaacgccggcgcGC
GTGTCCAACGTTGTAGCACGCTTGGCGCGTCAGGAGATTTCGGGCGTATT
TGTGCCCAAGGAGCTTCTTACGTTTGCGCCGCCGCCGAGGGCGAGACTGT
GCACCAGCTTGCTGTCCAACGCATCGGGGTCGTTGCAGCGCGCATTTGAC
GTTGGATCAGCTGACGTGTTGGCGTCGCTGTACCGCGTGAAGAATCTGGT
GTTGGTTAAGCGTCTGCTTGCGCGCAAGTTTGAGGGTGACAATGTGCTGT
ACTACGTGGTGTGGGGTGGTGGCGGTGTGAAGAATGGTAGCTGGGAGAAA
CGGGAGGCGCTAATGAAAGACGTGCCGGCCATGGTACGGCAGTTTGACGT
GAAGCACCCCATGTTGCCAGAGAAGGTAAATCTGCACGGAGAACGGCGGC
CAGCCGGGTGGCATTCAGGGTTGGACGGTAGGGTTAATAGCAACCGCGCG
AGCTGCCAGCAGTCACAGGTGGGCGGCAGTGAAGCAATGAGTGGGGCTCG
CGGTTTGGGTGGCACTGGTGGGGGTGGAGCAGCGTCAGACAGCGCTGTAG
GCATTGATGGCACGATGAGTGGTGGTGGGGAGATTGAGCATAGGGTATCG
ACGACGACTTCCGTCGGTCGCGCGAGCTCGACTACAGAAGTGGCAAGCAG
TGGAGGGCATGGTGGTGGGGGAGTGTCTGGCACGAAGCAAATTAGACATT
ACGTGGACGATTTGACTGGCGAGGAGATTCCGAGCTGGGTGGACACGCCG
ATTGTGGAGCTAAATATCTGCGGAATGATCTTACAGATTCGTCGCCCGGA
TGAGGCGGTGCTACACAATGACGCAACGTCAGCAGTGCGGGACACGAAGA
AGCGGCAGACACGGTTCAAGCAGGAGAACATTGTGGTGGGTGAGCGGCTG
TTCCCGCTGAGCAAATCGGAGGCGAAGGCGGCGGTTGAGGCGAGCGTGCG
GGTGCACCGGCAGTACAACCGACTGCCGATCCTGTTTCCACGCGGGATCG
GTCGCGTATCGGCGGGGGACCACGGCGCTGCGTTCTCGGTGGAGGACGCG
CAGCGCGCGCCGGCGTGTTGGGAAGGATACCTCAGCAGTGTGGGGCTACG
GTGTGTGGATTTTGAGCGCGAGCTAGCGCCGCATATGCCGAGCGCGGAGG
AGTGGGTGCGGGCGCGCGTGGCGCGCACGCGCGAGGAGTTGATTGCAGCG
ACGGCGACGGAGCACCGCGAGCGCGCGCGGAGGGTGCTGCGCGAGTGGTT
TCGGCACACTGGCGCGCCGCCGCCGGCGCAATTGTTTCGCGACGGGGTGC
GCGGCGGCGGGGCAAGCACGggggctgggagaggggcagggatggggagg
gggacggcgacgacgatgggagcggggaCTACGATGCCCGCGGCGAAACG
GCGGCGCGTGGGGCGGGAGGAGGGCGCGGTGGGGCGTGCGGGCGCGCCGG
GAACGCGCGACGCGCGTGTGGAGGCGGCGCTGCGCGCGGCGGCGCGACGA
GAGGGGCGTGAGGGGCGCAAAGGGCGCGGGGACGAAGAAGCGGGTGAGCA
TCGCTGGTTCGACGAAATCTGGGCTTGCTGGCGTGCGCGCGTGTAG

Coding sequence (CDS) from alignment at tig00004416_pilon:417414..419759+

>Gchil6704.t1 ID=Gchil6704.t1|Name=Gchil6704.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2346bp|location=Sequence derived from alignment at tig00004416_pilon:417414..419759+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCCACCCTCAGCGCCCTCATCCACAGATTGGAGCAGCAAACCGC
ATTCTTCGACTCCAAGCCCGACATTCTTGCCTGGCAGGTGCGCGAGGCCA
TTCGCACCGAGTTTTTCAAGATCGTGTACCCCACGCCGCCCACCTCCGAG
TTGTGCGCGCTCGTGCAGAACTGCGAGCAGCTTTTGCAACGTTATCATCT
ACCGCACCGTCCCTTCTTCTTCCCCGGCGGCCGTGTTGCTGTTCCTACCG
AGGCGGGCTCCCGTCGCGCTGCCACATCGTTGCAGCTTCGCTTCAAAATG
GCTTCTGGTATCACCGTCACCGAGGCTATGCTTCATTTGGACGGGCCCGA
CGGCGGCGCCTTTCAATGGGTGCAGACCCATGCACTCACCCCGTTAGCAC
CATTATTGGCTGCCGTCATGGCCCCGTCGCCTCAACAGCCACCGCCACCT
CGTCCGAAGCGTCGTCGTGCCACCGCTCAAAAGCGCCCGCGCCAGTCGCG
ACCGCGTGCAAGACGTGCCTCGCACCCGACGCACGGCGCATCACCTCCGC
CGAATGCATCGGGAGTCATGCTGCCGCAGCGCCCGCCCTTGCCGCAAATG
CATCGCGGCACATCTTTTTCCGCGCCGTCTCCGCCGTCCACGCCGATGCG
ATCGTCGCCGCAGCTTGTTGTGAACGCGCAGCAGTCGTATGTGCCTGCTG
GAGCACACTCATcgacaccgccgcagacgccgcagccaacgccggcgcGC
GTGTCCAACGTTGTAGCACGCTTGGCGCGTCAGGAGATTTCGGGCGTATT
TGTGCCCAAGGAGCTTCTTACGTTTGCGCCGCCGCCGAGGGCGAGACTGT
GCACCAGCTTGCTGTCCAACGCATCGGGGTCGTTGCAGCGCGCATTTGAC
GTTGGATCAGCTGACGTGTTGGCGTCGCTGTACCGCGTGAAGAATCTGGT
GTTGGTTAAGCGTCTGCTTGCGCGCAAGTTTGAGGGTGACAATGTGCTGT
ACTACGTGGTGTGGGGTGGTGGCGGTGTGAAGAATGGTAGCTGGGAGAAA
CGGGAGGCGCTAATGAAAGACGTGCCGGCCATGGTACGGCAGTTTGACGT
GAAGCACCCCATGTTGCCAGAGAAGGTAAATCTGCACGGAGAACGGCGGC
CAGCCGGGTGGCATTCAGGGTTGGACGGTAGGGTTAATAGCAACCGCGCG
AGCTGCCAGCAGTCACAGGTGGGCGGCAGTGAAGCAATGAGTGGGGCTCG
CGGTTTGGGTGGCACTGGTGGGGGTGGAGCAGCGTCAGACAGCGCTGTAG
GCATTGATGGCACGATGAGTGGTGGTGGGGAGATTGAGCATAGGGTATCG
ACGACGACTTCCGTCGGTCGCGCGAGCTCGACTACAGAAGTGGCAAGCAG
TGGAGGGCATGGTGGTGGGGGAGTGTCTGGCACGAAGCAAATTAGACATT
ACGTGGACGATTTGACTGGCGAGGAGATTCCGAGCTGGGTGGACACGCCG
ATTGTGGAGCTAAATATCTGCGGAATGATCTTACAGATTCGTCGCCCGGA
TGAGGCGGTGCTACACAATGACGCAACGTCAGCAGTGCGGGACACGAAGA
AGCGGCAGACACGGTTCAAGCAGGAGAACATTGTGGTGGGTGAGCGGCTG
TTCCCGCTGAGCAAATCGGAGGCGAAGGCGGCGGTTGAGGCGAGCGTGCG
GGTGCACCGGCAGTACAACCGACTGCCGATCCTGTTTCCACGCGGGATCG
GTCGCGTATCGGCGGGGGACCACGGCGCTGCGTTCTCGGTGGAGGACGCG
CAGCGCGCGCCGGCGTGTTGGGAAGGATACCTCAGCAGTGTGGGGCTACG
GTGTGTGGATTTTGAGCGCGAGCTAGCGCCGCATATGCCGAGCGCGGAGG
AGTGGGTGCGGGCGCGCGTGGCGCGCACGCGCGAGGAGTTGATTGCAGCG
ACGGCGACGGAGCACCGCGAGCGCGCGCGGAGGGTGCTGCGCGAGTGGTT
TCGGCACACTGGCGCGCCGCCGCCGGCGCAATTGTTTCGCGACGGGGTGC
GCGGCGGCGGGGCAAGCACGggggctgggagaggggcagggatggggagg
gggacggcgacgacgatgggagcggggaCTACGATGCCCGCGGCGAAACG
GCGGCGCGTGGGGCGGGAGGAGGGCGCGGTGGGGCGTGCGGGCGCGCCGG
GAACGCGCGACGCGCGTGTGGAGGCGGCGCTGCGCGCGGCGGCGCGACGA
GAGGGGCGTGAGGGGCGCAAAGGGCGCGGGGACGAAGAAGCGGGTGAGCA
TCGCTGGTTCGACGAAATCTGGGCTTGCTGGCGTGCGCGCGTGTAG