Gchil6615.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6615.t1
Unique NameGchil6615.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Homology
BLAST of Gchil6615.t1 vs. uniprot
Match: A0A2V3J089_9FLOR (CST complex subunit STN1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J089_9FLOR)

HSP 1 Score: 202 bits (513), Expect = 9.640e-64
Identity = 92/166 (55.42%), Postives = 121/166 (72.89%), Query Frame = 0
Query:    1 MSSFYDNHLNWGLDPLFHAHVKMLVGMLHRLTQPKSHKTKAVAFYRYAPHQPARPLRLVHISGIVVFLARHTKFSRYLVDDGSATARCVLWNDDAEHSPVISLGDFVSVLGRIEWQQGVLLVIVNTQHVPSWPYAELSWWLEVKDVHQKVYSEPLVINLVSESSLT 166
            M  FY NHLNW LDPLFH HVK+   ML +   P +    ++ FYRYAP+ PARPLRLVHI+GIVV++  H+KFSRY++DDGS+TARC+LWND  E +  ++LGDFV V GR+EWQ+ +LLV+V +Q   + PYAEL WWL+V+  H +VYS+P  + L  E + T
Sbjct:    1 MHHFYANHLNWALDPLFHVHVKLFNRMLEQAIPPATDGNNSITFYRYAPNLPARPLRLVHIAGIVVYVNHHSKFSRYILDDGSSTARCLLWND-TEPAAQLALGDFVEVRGRLEWQKQILLVVVQSQQSLTSPYAELDWWLQVRTAHHQVYSQPFEMFLTPEQTQT 165          
BLAST of Gchil6615.t1 vs. uniprot
Match: B3S8C5_TRIAD (OB domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S8C5_TRIAD)

HSP 1 Score: 70.1 bits (170), Expect = 3.410e-11
Identity = 44/145 (30.34%), Postives = 67/145 (46.21%), Query Frame = 0
Query:   11 WGLDPLFHAHVKMLVGMLHRLTQPKSHKTKAVAFYRYAPHQPARPLRLVHISGIVVFLARHTKFSRYLVDDGSATARCVLWNDDAEHSPVISLGDFVSVLGRIEW---QQGVLLVIVNTQHVPSWPYAELSWWLEVKDVHQKVYS 152
            WGLDPLF AH+K+L+  +  L   K         Y Y  H     +  V I G VV + +  K    ++DDG+    C LW D  +      LGD V+++GR+       G  +V+    +    P  E   W ++  +HQ+VY+
Sbjct:   10 WGLDPLFSAHIKLLIRDVDHLLAVKDFTN----VYLYHDHI----IYKVEIMGDVVSVVKKNKLDEIVLDDGTGRISCTLWKD-RDKIRDCKLGDLVTIMGRVTEGYRDSGKRIVVQRLVNDTLRPNIEYKRWKDIIQLHQRVYT 145          
BLAST of Gchil6615.t1 vs. uniprot
Match: R7QFA4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFA4_CHOCR)

HSP 1 Score: 58.2 bits (139), Expect = 4.120e-8
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0
Query:   11 WGLDPLFHAHVKMLVGMLHRLTQPKSHKTKAVAFYRYAPHQPARPLRLVHISGIVVFLARHTKFSR 76
            WGLDPLFH HVK+  G L R+   +     +V F  +    P RP+RL  ++G+VVF+++H K  R
Sbjct:   11 WGLDPLFHVHVKLFAGSLGRMKPGQWGDGDSVYFSSFVRGYP-RPVRLASLAGLVVFISKHQKVMR 75          
BLAST of Gchil6615.t1 vs. uniprot
Match: A0A8H7QV35_9FUNG (OB domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QV35_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 3.910e-6
Identity = 37/104 (35.58%), Postives = 53/104 (50.96%), Query Frame = 0
Query:   11 WGLDPLFHAHVKMLVGMLHRLTQPKSHKTKAVAFYRYAPHQPARPLRLVHISGIVVFLARHTKFSRYLVDDGSATARCVLWNDDAEHSPV-ISLGDFVSVLGRI 113
            +GLDPLFH HVK+ +  + +L +      +    Y +        +RLV I GIVV          Y VDD SAT  C L++D+ + + V + LG  V V G+I
Sbjct:    6 FGLDPLFHTHVKLFIKDVLKLERVPDVSLEVFQLYDHV-------IRLVEICGIVVAFESSGGNIIYTVDDASATISCCLFSDNMDVNYVPLELGTAVRVRGKI 102          
The following BLAST results are available for this feature:
BLAST of Gchil6615.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J089_9FLOR9.640e-6455.42CST complex subunit STN1 n=1 Tax=Gracilariopsis ch... [more]
B3S8C5_TRIAD3.410e-1130.34OB domain-containing protein n=2 Tax=Trichoplax Ta... [more]
R7QFA4_CHOCR4.120e-842.42Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A8H7QV35_9FUNG3.910e-635.58OB domain-containing protein n=1 Tax=Mucor saturni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 6..156
e-value: 4.3E-21
score: 76.9
IPR032245RecQ-mediated genome instability protein 2PFAMPF16100RMI2coord: 20..147
e-value: 5.9E-8
score: 32.6
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 55..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:888676..889266 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6615.t1Gchil6615.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 888676..889266 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6615.t1 ID=Gchil6615.t1|Name=Gchil6615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MSSFYDNHLNWGLDPLFHAHVKMLVGMLHRLTQPKSHKTKAVAFYRYAPH
QPARPLRLVHISGIVVFLARHTKFSRYLVDDGSATARCVLWNDDAEHSPV
ISLGDFVSVLGRIEWQQGVLLVIVNTQHVPSWPYAELSWWLEVKDVHQKV
YSEPLVINLVSESSLTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032245RMI2
IPR012340NA-bd_OB-fold