Gchil6615.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6615.t1
Unique NameGchil6615.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:888676..889266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP60488
Preferred nameOBFC1
PFAMsSTN1_2,Stn1,tRNA_anti-codon
Max annot lvl33208|Metazoa
GOsGO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0001650,GO:0001944,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005856,GO:0006139,GO:0006259,GO:0006275,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032501,GO:0032502,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0034641,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0045111,GO:0045740,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098847,GO:1901360,GO:1901363,GO:1904356,GO:1904357,GO:1990879,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Evalue2.89e-11
EggNOG OGsCOG5235@1|root,KOG3108@2759|Eukaryota,38IVJ@33154|Opisthokonta,3BHFU@33208|Metazoa
DescriptionComponent of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6615Gchil6615Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 888676..889266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6615.t1Gchil6615.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 888676..889266 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6615.t1.stop1Gchil6615.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 888676..888678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6615.t1.CDS1Gchil6615.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 888676..888960 -
Gchil6615.t1.CDS2Gchil6615.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 889048..889266 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6615.t1.exon1Gchil6615.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 888676..888960 -
Gchil6615.t1.exon2Gchil6615.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 889048..889266 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6615.t1.intron1Gchil6615.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 888961..889047 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6615.t1.start1Gchil6615.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 889264..889266 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6615.t1 ID=Gchil6615.t1|Name=Gchil6615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=168bp
MSSFYDNHLNWGLDPLFHAHVKMLVGMLHRLTQPKSHKTKAVAFYRYAPH
QPARPLRLVHISGIVVFLARHTKFSRYLVDDGSATARCVLWNDDAEHSPV
ISLGDFVSVLGRIEWQQGVLLVIVNTQHVPSWPYAELSWWLEVKDVHQKV
YSEPLVINLVSESSLTS*
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spliced messenger RNA

>Gchil6615.t1 ID=Gchil6615.t1|Name=Gchil6615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00004390_pilon:888676..889266- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCTTTTATGACAACCATCTCAATTGGGGTTTGGACCCTTTGTT
TCATGCTCATGTCAAGATGCTTGTAGGCATGCTACACCGACTCACGCAGC
CCAAGAGTCACAAAACGAAAGCCGTCGCTTTTTACCGATACGCCCCTCAT
CAGCCAGCCCGACCGCTTCGCCTGGTGCACATATCTGGCATCGTCGTCTT
CCTAGCCCGTCACACCAAATTTTCGAGATATCTTGTGGACGATGGCAGTG
CAACCGCTCGATGTGTGCTTTGGAACGATGACGCGGAACATTCTCCTGTC
ATATCCCTCGGAGATTTTGTCAGCGTCCTGGGTCGCATCGAATGGCAACA
GGGAGTTTTGCTTGTCATAGTCAACACGCAGCATGTTCCCTCTTGGCCTT
ACGCGGAGCTCTCGTGGTGGCTTGAGGTCAAAGATGTCCACCAAAAAGTG
TACTCTGAGCCATTAGTTATTAATTTAGTTTCTGAAAGCAGTTTGACGTC
TTGA
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protein sequence of Gchil6615.t1

>Gchil6615.t1 ID=Gchil6615.t1|Name=Gchil6615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MSSFYDNHLNWGLDPLFHAHVKMLVGMLHRLTQPKSHKTKAVAFYRYAPH
QPARPLRLVHISGIVVFLARHTKFSRYLVDDGSATARCVLWNDDAEHSPV
ISLGDFVSVLGRIEWQQGVLLVIVNTQHVPSWPYAELSWWLEVKDVHQKV
YSEPLVINLVSESSLTS*
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mRNA from alignment at tig00004390_pilon:888676..889266-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6615.t1 ID=Gchil6615.t1|Name=Gchil6615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00004390_pilon:888676..889266- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCTTTTATGACAACCATCTCAATTGGGGTTTGGACCCTTTGTT
TCATGCTCATGTCAAGATGCTTGTAGGCATGCTACACCGACTCACGCAGC
CCAAGAGTCACAAAACGAAAGCCGTCGCTTTTTACCGATACGCCCCTCAT
CAGCCAGCCCGACCGCTTCGCCTGGTGCACATATCTGGCATCGTCGTCTT
CCTAGCCCGTCACACCAAAGTACGTCCCTCAATTTATTCAGCGGTACAAA
CGCTCCTTCCGTGTAAAATTGCACCTACCTAATCTCATTTGTGTGTTTGT
CATAAGTTTTCGAGATATCTTGTGGACGATGGCAGTGCAACCGCTCGATG
TGTGCTTTGGAACGATGACGCGGAACATTCTCCTGTCATATCCCTCGGAG
ATTTTGTCAGCGTCCTGGGTCGCATCGAATGGCAACAGGGAGTTTTGCTT
GTCATAGTCAACACGCAGCATGTTCCCTCTTGGCCTTACGCGGAGCTCTC
GTGGTGGCTTGAGGTCAAAGATGTCCACCAAAAAGTGTACTCTGAGCCAT
TAGTTATTAATTTAGTTTCTGAAAGCAGTTTGACGTCTTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:888676..889266-

>Gchil6615.t1 ID=Gchil6615.t1|Name=Gchil6615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00004390_pilon:888676..889266- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCTTTTATGACAACCATCTCAATTGGGGTTTGGACCCTTTGTT
TCATGCTCATGTCAAGATGCTTGTAGGCATGCTACACCGACTCACGCAGC
CCAAGAGTCACAAAACGAAAGCCGTCGCTTTTTACCGATACGCCCCTCAT
CAGCCAGCCCGACCGCTTCGCCTGGTGCACATATCTGGCATCGTCGTCTT
CCTAGCCCGTCACACCAAATTTTCGAGATATCTTGTGGACGATGGCAGTG
CAACCGCTCGATGTGTGCTTTGGAACGATGACGCGGAACATTCTCCTGTC
ATATCCCTCGGAGATTTTGTCAGCGTCCTGGGTCGCATCGAATGGCAACA
GGGAGTTTTGCTTGTCATAGTCAACACGCAGCATGTTCCCTCTTGGCCTT
ACGCGGAGCTCTCGTGGTGGCTTGAGGTCAAAGATGTCCACCAAAAAGTG
TACTCTGAGCCATTAGTTATTAATTTAGTTTCTGAAAGCAGTTTGACGTC
TTGA
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