Gchil5904.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5904.t1
Unique NameGchil5904.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length277
Homology
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BLAST of Gchil5904.t1 vs. uniprot
Match: A0A2V3IVP9_9FLOR (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVP9_9FLOR)

HSP 1 Score: 138 bits (347), Expect = 1.130e-35
Identity = 110/278 (39.57%), Postives = 140/278 (50.36%), Query Frame = 0 
Query:    1 MSFGDVALTLP-SADAQSAPVIAELQRLLKPLSANNSALRNTTKSLLNPQSGSP--PDLKRVRALREQNRQIARAAQALVTAIDTRLAAASTQVVQRAGAAKKEYQLHLDEFSAALQQSVRAEKQYIESTQQ--AYFQERNRXXXXXXXXXXXXXXAIRIASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDQRSQVEYVEVAVADSELNVQRAQRELEKTKRRHERNKRFFFGALVTMALVIAVVLIL 273
            MSF DVA  LP +AD  SAP +AELQRLLKPL+ANN+AL++    L +  S  P  P L+RVRALREQNR I RAA  LV A+D  L  AS  +++RA  AK  +Q  L +FS  +  S  AE  Y++  QQ  A  +                       +                                                          DQR Q+EYVEVA++DS  +VQRA+ ELEKTKRRHERNKRFFF +L+++A V+AV+LIL
Sbjct:    1 MSFADVAHKLPVAADVHSAPAVAELQRLLKPLAANNTALQHAAAQLSSDASPLPNAPLLRRVRALREQNRHIVRAASNLVVALDALLPNASAPLLRRAADAKARFQTLLHDFSRLVHHSAAAENAYLQRLQQQPAPHEPHALTESQTALVEEEKQLLFVTPTESQPLLPASQRTAAERATLRELHTTHSLAREQNTVLTEMQSSIHDVNSIFKDLAVMVADQRPQLEYVEVALSDSTRDVQRARNELEKTKRRHERNKRFFFVSLLSVAAVVAVLLIL 278
The following BLAST results are available for this feature:
BLAST of Gchil5904.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IVP9_9FLOR1.130e-3539.57t-SNARE coiled-coil homology domain-containing pro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 228..255
NoneNo IPR availableGENE3D1.20.5.110coord: 165..275
e-value: 3.1E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR19957:SF38LD23667Pcoord: 41..261
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..254
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 276..276
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 255..275
NoneNo IPR availableCDDcd15840SNARE_Qacoord: 186..244
e-value: 1.08481E-9
score: 51.3605
NoneNo IPR availableTMHMMTMhelixcoord: 255..274
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 178..245
e-value: 5.2E-7
score: 39.3
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 183..245
score: 13.725183
IPR045242SyntaxinPANTHERPTHR19957SYNTAXINcoord: 41..261
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 21..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:117051..117881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5904.t1Gchil5904.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00025225_pilon 117051..117881 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5904.t1 ID=Gchil5904.t1|Name=Gchil5904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=277bp
MSFGDVALTLPSADAQSAPVIAELQRLLKPLSANNSALRNTTKSLLNPQS
GSPPDLKRVRALREQNRQIARAAQALVTAIDTRLAAASTQVVQRAGAAKK
EYQLHLDEFSAALQQSVRAEKQYIESTQQAYFQERNRRETESQASLQQEQ
DAIRIASESEPLLQSAQRTARERATLRELSTNQSLARETNQVLTEVHSSI
DDVNTIFKDLAVMIGDQRSQVEYVEVAVADSELNVQRAQRELEKTKRRHE
RNKRFFFGALVTMALVIAVVLILLLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR045242Syntaxin
IPR010989SNARE