Gchil5732.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5732.t1
Unique NameGchil5732.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length74
Homology
BLAST of Gchil5732.t1 vs. uniprot
Match: A0A2V3IRY2_9FLOR (50S ribosomal protein L30 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY2_9FLOR)

HSP 1 Score: 123 bits (309), Expect = 1.900e-35
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0
Query:    1 MRASDVLRNTKLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIERIHAQD 71
            M+A+DVLRNTKLSVKLIRSTIGRP  QR IVR LGFR+LNQT +HEDGPRVWGML+KV+HLVKIERIHA++
Sbjct:    1 MKATDVLRNTKLSVKLIRSTIGRPEYQRTIVRHLGFRRLNQTKIHEDGPRVWGMLEKVLHLVKIERIHAEE 71          
BLAST of Gchil5732.t1 vs. uniprot
Match: R7QT95_CHOCR (Ribosomal_L30 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT95_CHOCR)

HSP 1 Score: 107 bits (267), Expect = 4.840e-29
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0
Query:    1 MRASDVLRNTKLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIERIHAQDA 72
            M+A   L NTKL+VKLIRSTIGRPP QR I++ LG RKLNQ  +H+DGPRVWGML+KVIHLVK+ERI A DA
Sbjct:    1 MQAWVKLNNTKLAVKLIRSTIGRPPNQRKIIQVLGLRKLNQVRIHDDGPRVWGMLEKVIHLVKLERIRAVDA 72          
BLAST of Gchil5732.t1 vs. uniprot
Match: UPI0005CD82C5 (50S ribosomal protein L30 n=1 Tax=Bacillus alveayuensis TaxID=279215 RepID=UPI0005CD82C5)

HSP 1 Score: 72.0 bits (175), Expect = 3.030e-15
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIE 65
            KL++ L RS IGR  KQR+ V+ LG RKLNQT VH+D P + GM+ KV HLVK+E
Sbjct:    4 KLAITLTRSVIGRSEKQRLTVKTLGLRKLNQTVVHDDNPAIRGMINKVAHLVKVE 58          
BLAST of Gchil5732.t1 vs. uniprot
Match: UPI000412925A (50S ribosomal protein L30 n=1 Tax=Desulfovirgula thermocuniculi TaxID=348842 RepID=UPI000412925A)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIERI 67
            KL + L+RS IGRP  QR +VR LG RKL  +  HED P + GM+ KV HLVK+ER+
Sbjct:    3 KLKITLVRSLIGRPQDQRAVVRSLGLRKLYSSVTHEDTPSIRGMINKVSHLVKVERL 59          
BLAST of Gchil5732.t1 vs. uniprot
Match: A0A661J885_9DELT (50S ribosomal protein L30 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661J885_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 4.410e-14
Identity = 27/61 (44.26%), Postives = 45/61 (73.77%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIERIHAQD 71
            KL V L+RS IGRP KQ+ +++ LG  KLN+  + +D P +WGM++KV HLV+++++  ++
Sbjct:    4 KLIVTLVRSKIGRPKKQKAVIKGLGLNKLNKKVILKDSPEIWGMIKKVSHLVEVKKVRGEN 64          
BLAST of Gchil5732.t1 vs. uniprot
Match: A0A135L7D6_9BACI (50S ribosomal protein L30 n=1 Tax=Tepidibacillus decaturensis TaxID=1413211 RepID=A0A135L7D6_9BACI)

HSP 1 Score: 68.2 bits (165), Expect = 1.060e-13
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIERIHA 69
            KL + L RS IGRP  QR++VR LG RK+NQT +H D P + GM+ KV HL+ +  + A
Sbjct:    4 KLQITLKRSVIGRPESQRVVVRTLGLRKVNQTVIHNDNPAIRGMVNKVKHLLDVVEVEA 62          
BLAST of Gchil5732.t1 vs. uniprot
Match: A0A1D2YS17_9BACI (50S ribosomal protein L30 n=1 Tax=Vulcanibacillus modesticaldus TaxID=337097 RepID=A0A1D2YS17_9BACI)

HSP 1 Score: 67.8 bits (164), Expect = 1.510e-13
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIERI 67
            KL + L RS IGRP  QR+ V+ LG RKLNQT VH D P + GM+ KV HLV++  +
Sbjct:    4 KLQITLKRSLIGRPETQRVTVKTLGLRKLNQTVVHNDNPAIRGMINKVSHLVEVTEV 60          
BLAST of Gchil5732.t1 vs. uniprot
Match: F5HRN3_PRIMG (50S ribosomal protein L30 n=30 Tax=Bacillaceae TaxID=186817 RepID=F5HRN3_PRIMG)

HSP 1 Score: 67.4 bits (163), Expect = 2.040e-13
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIE 65
            KL++ L RS IGRP  QR+ VR LG RKLNQT V +D P + GM+ KV HLV ++
Sbjct:    4 KLAITLTRSVIGRPEDQRVTVRTLGLRKLNQTVVQDDNPAIRGMINKVAHLVTVK 58          
BLAST of Gchil5732.t1 vs. uniprot
Match: A0A523QLM6_9BACT (50S ribosomal protein L30 n=7 Tax=root TaxID=1 RepID=A0A523QLM6_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.980e-13
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKIERI 67
            +L VKL+RS IGRP +QR +V+ LG RK+N     +D P +WGM+ KV HLV++E +
Sbjct:   30 QLKVKLVRSLIGRPKQQREVVKGLGLRKINSEATRKDCPEIWGMINKVRHLVEVEEL 86          
BLAST of Gchil5732.t1 vs. uniprot
Match: A0A1E5LGM7_9BACI (50S ribosomal protein L30 n=1 Tax=Bacillus solimangrovi TaxID=1305675 RepID=A0A1E5LGM7_9BACI)

HSP 1 Score: 66.6 bits (161), Expect = 4.110e-13
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   11 KLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPRVWGMLQKVIHLVKI 64
            KL + L RS IGRP  QR+ VR LG RKLNQT  HED P + GM+ KV HL+++
Sbjct:    4 KLDITLKRSLIGRPEDQRVTVRTLGLRKLNQTVEHEDNPAIRGMINKVSHLLEV 57          
The following BLAST results are available for this feature:
BLAST of Gchil5732.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRY2_9FLOR1.900e-3581.6950S ribosomal protein L30 n=1 Tax=Gracilariopsis c... [more]
R7QT95_CHOCR4.840e-2972.22Ribosomal_L30 domain-containing protein n=1 Tax=Ch... [more]
UPI0005CD82C53.030e-1560.0050S ribosomal protein L30 n=1 Tax=Bacillus alveayu... [more]
UPI000412925A1.790e-1456.1450S ribosomal protein L30 n=1 Tax=Desulfovirgula t... [more]
A0A661J885_9DELT4.410e-1444.2650S ribosomal protein L30 n=1 Tax=Deltaproteobacte... [more]
A0A135L7D6_9BACI1.060e-1350.8550S ribosomal protein L30 n=1 Tax=Tepidibacillus d... [more]
A0A1D2YS17_9BACI1.510e-1354.3950S ribosomal protein L30 n=1 Tax=Vulcanibacillus ... [more]
F5HRN3_PRIMG2.040e-1356.3650S ribosomal protein L30 n=30 Tax=Bacillaceae Tax... [more]
A0A523QLM6_9BACT2.980e-1350.8850S ribosomal protein L30 n=7 Tax=root TaxID=1 Rep... [more]
A0A1E5LGM7_9BACI4.110e-1357.4150S ribosomal protein L30 n=1 Tax=Bacillus soliman... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilyGENE3D3.30.1390.20coord: 10..68
e-value: 1.1E-22
score: 81.3
IPR036919Ribosomal protein L30, ferredoxin-like fold domain superfamilySUPERFAMILY55129Ribosomal protein L30p/L7ecoord: 11..67
IPR005996Ribosomal protein L30, bacterial-typeTIGRFAMTIGR01308TIGR01308coord: 13..65
e-value: 1.2E-19
score: 67.8
IPR005996Ribosomal protein L30, bacterial-typePANTHERPTHR15892MITOCHONDRIAL RIBOSOMAL PROTEIN L30coord: 10..69
IPR005996Ribosomal protein L30, bacterial-typeHAMAPMF_01371_BRibosomal_L30_Bcoord: 7..66
score: 17.201811
IPR005996Ribosomal protein L30, bacterial-typeCDDcd01658Ribosomal_L30coord: 12..65
e-value: 1.44355E-19
score: 71.6834
IPR016082Ribosomal protein L30, ferredoxin-like fold domainPFAMPF00327Ribosomal_L30coord: 13..62
e-value: 2.0E-17
score: 62.8
NoneNo IPR availablePANTHERPTHR15892:SF239S RIBOSOMAL PROTEIN L30, MITOCHONDRIALcoord: 10..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1216658..1216965 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5732.t1Gchil5732.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000015_pilon 1216658..1216965 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5732.t1 ID=Gchil5732.t1|Name=Gchil5732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=74bp
MRASDVLRNTKLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPR
VWGMLQKVIHLVKIERIHAQDAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036919L30_ferredoxin-like_sf
IPR005996Ribosomal_L30_bac-type
IPR016082Ribosomal_L30_ferredoxin-like