Gchil5732.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5732.t1
Unique NameGchil5732.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1216658..1216965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1089548.KI783301_gene3367
Preferred namerpmD
PFAMsRibosomal_L30
Max annot lvl91061|Bacilli
KEGG koko:K02907
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Evalue2.1e-15
EggNOG OGsCOG1841@1|root,COG1841@2|Bacteria,1VEG4@1239|Firmicutes,4HNHF@91061|Bacilli,3WF3D@539002|Bacillales incertae sedis
Descriptionribosomal protein L30
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5732Gchil5732Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1216658..1216965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5732.t1Gchil5732.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1216658..1216965 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5732.t1.stop1Gchil5732.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1216658..1216660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5732.t1.CDS1Gchil5732.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1216658..1216783 -
Gchil5732.t1.CDS2Gchil5732.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1216870..1216965 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5732.t1.exon1Gchil5732.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1216658..1216783 -
Gchil5732.t1.exon2Gchil5732.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1216870..1216965 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5732.t1.intron1Gchil5732.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 1216784..1216869 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5732.t1.start1Gchil5732.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1216963..1216965 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5732.t1 ID=Gchil5732.t1|Name=Gchil5732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=74bp
MRASDVLRNTKLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPR
VWGMLQKVIHLVKIERIHAQDAL*
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spliced messenger RNA

>Gchil5732.t1 ID=Gchil5732.t1|Name=Gchil5732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00000015_pilon:1216658..1216965- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCCAGCGATGTTTTGAGAAACACCAAGCTGTCAGTCAAGTTGAT
TCGTAGCACCATCGGACGACCGCCCAAGCAACGAATTATCGTTCGCCAAC
TTGGATTTCGAAAACTCAATCAAACAACCGTTCACGAGGATGGTCCTCGT
GTTTGGGGTATGCTCCAGAAAGTCATCCATTTAGTGAAGATCGAGAGAAT
CCATGCTCAAGATGCTCTGTAA
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protein sequence of Gchil5732.t1

>Gchil5732.t1 ID=Gchil5732.t1|Name=Gchil5732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=74bp
MRASDVLRNTKLSVKLIRSTIGRPPKQRIIVRQLGFRKLNQTTVHEDGPR
VWGMLQKVIHLVKIERIHAQDAL*
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mRNA from alignment at tig00000015_pilon:1216658..1216965-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5732.t1 ID=Gchil5732.t1|Name=Gchil5732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=308bp|location=Sequence derived from alignment at tig00000015_pilon:1216658..1216965- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGCCAGCGATGTTTTGAGAAACACCAAGCTGTCAGTCAAGTTGAT
TCGTAGCACCATCGGACGACCGCCCAAGCAACGAATTATCGTTCGCGTAC
GTTGCTTACGGACATTGCTTTACACTTTTCATCCTCATGTTGAGCGCTAA
CATTCCTTATGTCTTACACTATTGTGCTTCAGCAACTTGGATTTCGAAAA
CTCAATCAAACAACCGTTCACGAGGATGGTCCTCGTGTTTGGGGTATGCT
CCAGAAAGTCATCCATTTAGTGAAGATCGAGAGAATCCATGCTCAAGATG
CTCTGTAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1216658..1216965-

>Gchil5732.t1 ID=Gchil5732.t1|Name=Gchil5732.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00000015_pilon:1216658..1216965- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGCCAGCGATGTTTTGAGAAACACCAAGCTGTCAGTCAAGTTGAT
TCGTAGCACCATCGGACGACCGCCCAAGCAACGAATTATCGTTCGCCAAC
TTGGATTTCGAAAACTCAATCAAACAACCGTTCACGAGGATGGTCCTCGT
GTTTGGGGTATGCTCCAGAAAGTCATCCATTTAGTGAAGATCGAGAGAAT
CCATGCTCAAGATGCTCTGTAA
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