Gchil5647.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5647.t1
Unique NameGchil5647.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Homology
BLAST of Gchil5647.t1 vs. uniprot
Match: A0A2V3IU10_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU10_9FLOR)

HSP 1 Score: 475 bits (1222), Expect = 4.640e-162
Identity = 241/349 (69.05%), Postives = 287/349 (82.23%), Query Frame = 0
Query:   49 PYNRARPPEPLSARAGPSSGRYGAP-ALGIAAPSSTIAKRMTRSDLFDHSSSPSAPSPAVPRTPGAQSNLERRKAHRAYTQKSRNKVNSRFEALLDALPTPPPRLNPRSKAEILEYATETIIRLVGQNDKLELNLALSSSEQLKSWLHTETQSVRTLREVCQPVMRLFTIGLEWTGAEAWAVDSRLPTDRASLAQAWTFVPPPGGRRPTREEEARTAELTTFLEAARGTCYATNSNEAVSLVYRRGIPAWLSCEFRQYEGLENLDFTVERTRTAASYGVTDVLYLPLTLYNHVQIVVTFYNVRLRSGGQNAELHPEVNPKSSMRVARETIAIVKRRFSQVPSIGMLSVG 396
            PY+RARPPEP+   + P    YG P  LG +AP   I KRM+R+D+ D SSSPS PSPA  R    QS+LERRKAHRAYTQKSRNKVN+RFEALLDALPTPPPRLNPRSKAEILEYATET+IRLV QN+KLEL+LALSSS QL+SWLH +TQ+ RTLREVCQPVMRLFTIGLEW GAE WA+DSRLPT  ASL QAW FVPPP GRRP+REEEAR  +LTTFL++ + TC+ATNS EAV++VYRRG P W+SCE+ Q++G +  +F  ERTR A +YG+TDVL +PL LYNHVQIVV+FYN+R R+  QN ELHP+++PKSS+RVA+ETIAI+ RRF+Q+P++G    G
Sbjct:  181 PYDRARPPEPIPNPSAP----YGTPLTLGPSAPG--IMKRMSRADMPDQSSSPSVPSPA--RALVGQSSLERRKAHRAYTQKSRNKVNTRFEALLDALPTPPPRLNPRSKAEILEYATETVIRLVAQNNKLELSLALSSSPQLESWLHDQTQAARTLREVCQPVMRLFTIGLEWKGAEVWAIDSRLPTPTASLGQAWNFVPPPSGRRPSREEEARVVDLTTFLDSVKNTCFATNSTEAVAVVYRRGKPGWVSCEYTQHDGFDGEEFVSERTRMAPNYGITDVLLVPLILYNHVQIVVSFYNMRSRTYQQNPELHPQIDPKSSLRVAQETIAIIGRRFAQLPAVGNFGAG 521          
BLAST of Gchil5647.t1 vs. uniprot
Match: A0A2V3J090_9FLOR (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J090_9FLOR)

HSP 1 Score: 84.3 bits (207), Expect = 3.240e-14
Identity = 63/228 (27.63%), Postives = 101/228 (44.30%), Query Frame = 0
Query:  125 AYTQKSRNKVNSRFEALLDALPTPPPRLNPRSKAEILEYATETIIRLVGQNDKLELNLALSSSEQLKSWLHTETQSVRTLREVCQPVMRLFTIGLEWTGAEAWAVDSRLPTDRASLAQAWTFVPPPGGRRPTREEEARTAELTTFLEAARGTCYATNSNEAVSLVYRRGIPAWLSCEFRQYEGLENLDFTVERTRTAASYGVTDVLYLPLTLYNHVQIVVTFYNVRLR 352
            ++T++ R K+N+ F+ LL  LP PPP +  + KA+IL+YA +    +  +N KLE+ LALSS   +  W+ +   +   LR+  +  M +  +   W  AE W+  +  PTD +S+A  +       G  P   E      L  +   +R   +A  S      V+    P WL         L N      R   A    V     +P+ +   V++VV FY+   R
Sbjct:  141 SHTRRCRAKLNTNFDRLLQVLPKPPPGVEVKHKAQILQYAIDHYRHVRCKNVKLEMTLALSSRSHMHRWVQSVVHTSPNLRDSLKSFMAMICLTKNWKYAELWSPHT--PTDSSSVALTYA-----SGALPPTVEGEELHRLKAYRVKSRKYTFAPRSG-VPGRVFLTMRPEWLP--------LLNDPVAFPRAPHAVRNRVEVTFAVPVVVNGSVKMVVQFYDTYRR 352          
BLAST of Gchil5647.t1 vs. uniprot
Match: A0A7S1TET1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TET1_9RHOD)

HSP 1 Score: 70.9 bits (172), Expect = 1.440e-9
Identity = 56/245 (22.86%), Postives = 101/245 (41.22%), Query Frame = 0
Query:  117 LERRKAHRAYTQKSRNKVNSRFEALLDALPTPPPRLNPRSKAEILEYATETIIRLVGQNDKLELNLALSSSEQLKSWLHTETQSVRTLREVCQPVMRLFTIGLEWTGAEAWAVDSRLPTDRASLAQAWTFVPPPGGRRPTR-------------EEEARTAELTTFLEAARGTCYATNSNEAVSLVYRRGIPAWLSCEFRQYEGLENLDFTVERTRTAASYGVTDVLYLPLTLYNHVQIVVTFYN 348
            ++ ++ H+++T++ R KVN +F+ L++ LP PP     + KA+IL+Y+   +  L  +   LE  LALS+   L  W+           +   P +++      W  AE W     +P +   +       P P    PTR             ++  R   +  F++ +R   + T +  +   VY    P WL         L + +    R   A+  G+   L +P  +   V+ VV  Y+
Sbjct:  261 VQAKEVHKSHTRRCREKVNEKFQTLMNELPPPPTGTEIKHKAQILDYSIRVLKDLASRKAALESELALSNRRNLLGWVDRVVNDAEDFPDAINPFLKMMCSKKAWKCAELW-----VPVEERVMVSC----PLPQSETPTRLKLLRASFHENLEQDPPRHHRIHEFIDESRRFKF-TPTCGSPGRVYSTMRPEWL-------HDLSD-EQVFPRAELASKAGLVTCLSIPFLINGRVRGVVCLYD 487          
The following BLAST results are available for this feature:
BLAST of Gchil5647.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IU10_9FLOR4.640e-16269.05BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3J090_9FLOR3.240e-1427.63BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A7S1TET1_9RHOD1.440e-922.86Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 115..196
e-value: 1.6E-8
score: 36.6
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 118..184
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 119..171
e-value: 5.8E-7
score: 29.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 118..171
score: 11.731307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:420314..421549 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5647.t1Gchil5647.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000015_pilon 420314..421549 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5647.t1 ID=Gchil5647.t1|Name=Gchil5647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MSLPLVQPTPPPAASPFALDTDPEATAAAATAAAAAAAAAAAAAAASSPY
NRARPPEPLSARAGPSSGRYGAPALGIAAPSSTIAKRMTRSDLFDHSSSP
SAPSPAVPRTPGAQSNLERRKAHRAYTQKSRNKVNSRFEALLDALPTPPP
RLNPRSKAEILEYATETIIRLVGQNDKLELNLALSSSEQLKSWLHTETQS
VRTLREVCQPVMRLFTIGLEWTGAEAWAVDSRLPTDRASLAQAWTFVPPP
GGRRPTREEEARTAELTTFLEAARGTCYATNSNEAVSLVYRRGIPAWLSC
EFRQYEGLENLDFTVERTRTAASYGVTDVLYLPLTLYNHVQIVVTFYNVR
LRSGGQNAELHPEVNPKSSMRVARETIAIVKRRFSQVPSIGMLSVGADGT
IGIDTYGTDQF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom