Gchil5647.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5647.t1
Unique NameGchil5647.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:420314..421549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5647Gchil5647Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 420314..421549 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5647.t1.stop1Gchil5647.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 420314..420316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5647.t1.CDS1Gchil5647.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 420314..421549 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5647.t1.exon1Gchil5647.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 420314..421549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5647.t1.start1Gchil5647.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 421547..421549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5647.t1Gchil5647.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 420314..421549 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5647.t1 ID=Gchil5647.t1|Name=Gchil5647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MSLPLVQPTPPPAASPFALDTDPEATAAAATAAAAAAAAAAAAAAASSPY
NRARPPEPLSARAGPSSGRYGAPALGIAAPSSTIAKRMTRSDLFDHSSSP
SAPSPAVPRTPGAQSNLERRKAHRAYTQKSRNKVNSRFEALLDALPTPPP
RLNPRSKAEILEYATETIIRLVGQNDKLELNLALSSSEQLKSWLHTETQS
VRTLREVCQPVMRLFTIGLEWTGAEAWAVDSRLPTDRASLAQAWTFVPPP
GGRRPTREEEARTAELTTFLEAARGTCYATNSNEAVSLVYRRGIPAWLSC
EFRQYEGLENLDFTVERTRTAASYGVTDVLYLPLTLYNHVQIVVTFYNVR
LRSGGQNAELHPEVNPKSSMRVARETIAIVKRRFSQVPSIGMLSVGADGT
IGIDTYGTDQF*
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spliced messenger RNA

>Gchil5647.t1 ID=Gchil5647.t1|Name=Gchil5647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000015_pilon:420314..421549- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTTCCCCTTGTGCAACCCACACCCCCGCCTGCGGCTTCCCCCTT
CGCACTTGACACCGACCCCGAAGCCACTGCCGCCGCTGCAACTGCCGCCG
CTGCCGCCGCCGCTGCCGCCGCCGCCGCTGCCGCCGCCTCGTCACCATAC
AACCGGGCTCGCCCACCAGAGCCGCTTTCCGCGCGCGCCGGCCCTTCTTC
CGGGCGGTATGGGGCGCCCGCCCTCGGCATCGCTGCTCCATCCTCTACCA
TTGCCAAGCGCATGACCCGCTCCGACCTGTTCGATCACAGTTCGTCGCCA
TCAGCGCCATCCCCTGCTGTGCCGCGTACGCCGGGCGCGCAGTCCAACCT
GGAGCGGCGCAAAGCTCATCGCGCGTACACACAAAAGTCACGTAACAAAG
TCAACTCGCGCTTCGAAGCGCTGTTGGATGCGCTACCCACGCCTCCGCCG
CGCCTCAATCCGCGCTCCAAGGCGGAAATACTGGAGTACGCCACCGAAAC
CATCATCCGACTCGTGGGGCAAAACGACAAGTTGGAGCTGAATCTGGCGC
TGTCCAGCTCGGAGCAGCTGAAATCGTGGTTGCACACGGAGACGCAGTCG
GTGCGCACTCTGCGCGAGGTGTGCCAGCCGGTGATGCGGCTGTTTACCAT
CGGGCTTGAGTGGACTGGGGCAGAAGCGTGGGCAGTGGACTCGCGGCTAC
CCACTGACAGGGCATCATTAGCGCAGGCGTGGACGTTTGTGCCGCCGCCT
GGGGGCCGAAGACCGACGCGCGAAGAGGAAGCGCGCACTGCAGAACTGAC
CACGTTTCTGGAGGCGGCGCGGGGGACTTGCTACGCCACGAACTCCAATG
AGGCGGTGTCGCTCGTGTACCGTCGCGGCATACCAGCATGGCTTAGTTGC
GAGTTTCGGCAGTATGAAGGGTTGGAGAACTTGGATTTTACAGTAGAACG
GACGCGTACGGCGGCCAGCTATGGGGTAACGGATGTGCTGTACCTGCCGC
TGACTCTGTACAACCACGTGCAGATTGTGGTGACTTTTTACAATGTAAGA
TTGAGATCTGGGGGACAGAACGCAGAGTTGCATCCGGAGGTGAACCCAAA
GTCGTCGATGCGAGTGGCGCGGGAGACAATAGCGATTGTTAAGAGACGGT
TTTCACAGGTACCTTCAATAGGAATGTTGTCTGTTGGAGCTGATGGCACT
ATTGGTATCGATACGTACGGCACAGATCAGTTCTGA
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protein sequence of Gchil5647.t1

>Gchil5647.t1 ID=Gchil5647.t1|Name=Gchil5647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MSLPLVQPTPPPAASPFALDTDPEATAAAATAAAAAAAAAAAAAAASSPY
NRARPPEPLSARAGPSSGRYGAPALGIAAPSSTIAKRMTRSDLFDHSSSP
SAPSPAVPRTPGAQSNLERRKAHRAYTQKSRNKVNSRFEALLDALPTPPP
RLNPRSKAEILEYATETIIRLVGQNDKLELNLALSSSEQLKSWLHTETQS
VRTLREVCQPVMRLFTIGLEWTGAEAWAVDSRLPTDRASLAQAWTFVPPP
GGRRPTREEEARTAELTTFLEAARGTCYATNSNEAVSLVYRRGIPAWLSC
EFRQYEGLENLDFTVERTRTAASYGVTDVLYLPLTLYNHVQIVVTFYNVR
LRSGGQNAELHPEVNPKSSMRVARETIAIVKRRFSQVPSIGMLSVGADGT
IGIDTYGTDQF*
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mRNA from alignment at tig00000015_pilon:420314..421549-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5647.t1 ID=Gchil5647.t1|Name=Gchil5647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000015_pilon:420314..421549- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCTTCCCCTTGTGCAACCCACACCCCCGCCTGCGGCTTCCCCCTT
CGCACTTGACACCGACCCCGAAGCCACTGCCGCCGCTGCAACTGCCGCCG
CTGCCGCCGCCGCTGCCGCCGCCGCCGCTGCCGCCGCCTCGTCACCATAC
AACCGGGCTCGCCCACCAGAGCCGCTTTCCGCGCGCGCCGGCCCTTCTTC
CGGGCGGTATGGGGCGCCCGCCCTCGGCATCGCTGCTCCATCCTCTACCA
TTGCCAAGCGCATGACCCGCTCCGACCTGTTCGATCACAGTTCGTCGCCA
TCAGCGCCATCCCCTGCTGTGCCGCGTACGCCGGGCGCGCAGTCCAACCT
GGAGCGGCGCAAAGCTCATCGCGCGTACACACAAAAGTCACGTAACAAAG
TCAACTCGCGCTTCGAAGCGCTGTTGGATGCGCTACCCACGCCTCCGCCG
CGCCTCAATCCGCGCTCCAAGGCGGAAATACTGGAGTACGCCACCGAAAC
CATCATCCGACTCGTGGGGCAAAACGACAAGTTGGAGCTGAATCTGGCGC
TGTCCAGCTCGGAGCAGCTGAAATCGTGGTTGCACACGGAGACGCAGTCG
GTGCGCACTCTGCGCGAGGTGTGCCAGCCGGTGATGCGGCTGTTTACCAT
CGGGCTTGAGTGGACTGGGGCAGAAGCGTGGGCAGTGGACTCGCGGCTAC
CCACTGACAGGGCATCATTAGCGCAGGCGTGGACGTTTGTGCCGCCGCCT
GGGGGCCGAAGACCGACGCGCGAAGAGGAAGCGCGCACTGCAGAACTGAC
CACGTTTCTGGAGGCGGCGCGGGGGACTTGCTACGCCACGAACTCCAATG
AGGCGGTGTCGCTCGTGTACCGTCGCGGCATACCAGCATGGCTTAGTTGC
GAGTTTCGGCAGTATGAAGGGTTGGAGAACTTGGATTTTACAGTAGAACG
GACGCGTACGGCGGCCAGCTATGGGGTAACGGATGTGCTGTACCTGCCGC
TGACTCTGTACAACCACGTGCAGATTGTGGTGACTTTTTACAATGTAAGA
TTGAGATCTGGGGGACAGAACGCAGAGTTGCATCCGGAGGTGAACCCAAA
GTCGTCGATGCGAGTGGCGCGGGAGACAATAGCGATTGTTAAGAGACGGT
TTTCACAGGTACCTTCAATAGGAATGTTGTCTGTTGGAGCTGATGGCACT
ATTGGTATCGATACGTACGGCACAGATCAGTTCTGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:420314..421549-

>Gchil5647.t1 ID=Gchil5647.t1|Name=Gchil5647.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000015_pilon:420314..421549- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCTTCCCCTTGTGCAACCCACACCCCCGCCTGCGGCTTCCCCCTT
CGCACTTGACACCGACCCCGAAGCCACTGCCGCCGCTGCAACTGCCGCCG
CTGCCGCCGCCGCTGCCGCCGCCGCCGCTGCCGCCGCCTCGTCACCATAC
AACCGGGCTCGCCCACCAGAGCCGCTTTCCGCGCGCGCCGGCCCTTCTTC
CGGGCGGTATGGGGCGCCCGCCCTCGGCATCGCTGCTCCATCCTCTACCA
TTGCCAAGCGCATGACCCGCTCCGACCTGTTCGATCACAGTTCGTCGCCA
TCAGCGCCATCCCCTGCTGTGCCGCGTACGCCGGGCGCGCAGTCCAACCT
GGAGCGGCGCAAAGCTCATCGCGCGTACACACAAAAGTCACGTAACAAAG
TCAACTCGCGCTTCGAAGCGCTGTTGGATGCGCTACCCACGCCTCCGCCG
CGCCTCAATCCGCGCTCCAAGGCGGAAATACTGGAGTACGCCACCGAAAC
CATCATCCGACTCGTGGGGCAAAACGACAAGTTGGAGCTGAATCTGGCGC
TGTCCAGCTCGGAGCAGCTGAAATCGTGGTTGCACACGGAGACGCAGTCG
GTGCGCACTCTGCGCGAGGTGTGCCAGCCGGTGATGCGGCTGTTTACCAT
CGGGCTTGAGTGGACTGGGGCAGAAGCGTGGGCAGTGGACTCGCGGCTAC
CCACTGACAGGGCATCATTAGCGCAGGCGTGGACGTTTGTGCCGCCGCCT
GGGGGCCGAAGACCGACGCGCGAAGAGGAAGCGCGCACTGCAGAACTGAC
CACGTTTCTGGAGGCGGCGCGGGGGACTTGCTACGCCACGAACTCCAATG
AGGCGGTGTCGCTCGTGTACCGTCGCGGCATACCAGCATGGCTTAGTTGC
GAGTTTCGGCAGTATGAAGGGTTGGAGAACTTGGATTTTACAGTAGAACG
GACGCGTACGGCGGCCAGCTATGGGGTAACGGATGTGCTGTACCTGCCGC
TGACTCTGTACAACCACGTGCAGATTGTGGTGACTTTTTACAATGTAAGA
TTGAGATCTGGGGGACAGAACGCAGAGTTGCATCCGGAGGTGAACCCAAA
GTCGTCGATGCGAGTGGCGCGGGAGACAATAGCGATTGTTAAGAGACGGT
TTTCACAGGTACCTTCAATAGGAATGTTGTCTGTTGGAGCTGATGGCACT
ATTGGTATCGATACGTACGGCACAGATCAGTTCTGA
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