Gchil5645.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5645.t1
Unique NameGchil5645.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length441
Homology
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BLAST of Gchil5645.t1 vs. uniprot
Match: A0A2V3ITZ9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITZ9_9FLOR)

HSP 1 Score: 168 bits (426), Expect = 4.070e-43
Identity = 129/259 (49.81%), Postives = 163/259 (62.93%), Query Frame = 0 
Query:   67 RSGRKHTAESRRKIADANRGNVPWNKXXXXXXXXXXXXXXNTRKAMLRPEMRQLLKQRATGRRHSESTKVKIRASTRSARATSASASSRPSRRPRRAPLPFAFDAPVVARLDRAIADQIRSSFRRESSG-RRYVVAPARPLSDTTRAKLSLSIKRLWADPDYRARVARGVQQRQRALSAQRLAHSDPADPLAPTPARDSSPRSRPRHAAPGSQLLSPAQPEPQLPPADH--DILLRPEDIDGITMDDLGITDLHQEGIV 322
            R+GRKHTAE+RRKIA+ANRGN+PWNKXXXXXXXXXXXXX NT+KAM+RPEMR+LL++RATG           R + R+ R       S  +R  RR PL F F   VV +L+  IA +I  +F RE S  RR+VV   R LS+ TRAKLS  IK+LWADP YR RV++G+QQR++ ++        P+   AP PA D+   S  R         SP+ P       D   DI++R ED+ GITM+DLGIT +   GIV
Sbjct:  108 RAGRKHTAEARRKIANANRGNIPWNKXXXXXXXXXXXXXENTKKAMMRPEMRRLLQRRATGXXXXXXXXXXXRQAARNMRP------SAHTRAKRRRPLRFVFPENVVKQLNLDIAKEIEHTFEREESNDRRFVVNAKRSLSEETRAKLSAKIKKLWADPQYRDRVSKGIQQRRKQMTK-------PSASSAPDPAEDAQTVSTKRRIRTSQ---SPSLPRTTSGAEDXXXDIVIRSEDLAGITMEDLGITGIEHAGIV 350
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BLAST of Gchil5645.t1 vs. uniprot
Match: R7Q648_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q648_CHOCR)

HSP 1 Score: 134 bits (338), Expect = 1.790e-30
Identity = 123/316 (38.92%), Postives = 168/316 (53.16%), Query Frame = 0 
Query:   41 VPRRASAAADSASVSVAARAPL------------------PPPGRSGRKHTAESRRKIADANRGNVPWNKXXXXXXXXXXXXXXNTRKAMLRPEMRQLLKQRATGRRHSESTKVKIRASTRSARATSASASSRPSRRPRRAPLPFAFDAPVVARLDRAIADQIRSSFRRESSGRRYVVAPARPLSDTTRAKLSLSIKRLWADPDYRARVARGVQQRQRALSAQRLAHSDPADPLAPTPARDSSPRSRPRHAAPGSQLLSPAQPEPQLPPAD--------HD------ILLRPEDIDGITMDDLGITDLHQEGIVGI 324
            VPR + AA  S    +AA APL                    P  SG KHTAES+RKI+ ANRGNVPWNKXXXXXXXXXXXXX  TR+AML+P MR+LLK+RA               + R++R  +++      R+ +R  +PF+F   V+A L+  +  Q+  S+    S +  VV   RP+++ T+AKLS  IK LW+DPDYR++VA G++ R     AQR+  +  + P +P  +R SSPR       PGS      +   + P           HD      I L PE +DGIT +DLG+     EG + +
Sbjct:  185 VPRGSRAAPKSTVAPLAAAAPLRSTLRGTQSATTTLLPTVDTPKASGHKHTAESKRKISAANRGNVPWNKXXXXXXXXXXXXXEGTRRAMLQPAMRRLLKERAKXXXXXXXXXXXXXXTARASRGANSAI-----RKQKRQAVPFSFPESVIADLNAKVQHQLEKSYILSES-QHLVVREKRPMAEETKAKLSAKIKELWSDPDYRSKVAEGIESR-----AQRVGRTR-SPPSSPRASRASSPRPAKPKKEPGSXXXXTRRSRSKSPEVSTEDKKSSFHDDIDSSEIFLEPESLDGITKEDLGLFVPLSEGQINV 488
The following BLAST results are available for this feature:
BLAST of Gchil5645.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITZ9_9FLOR4.070e-4349.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q648_CHOCR1.790e-3038.92Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003611Nuclease associated modular domain 3SMARTSM00496seet_6coord: 92..108
e-value: 3.0
score: 16.8
coord: 202..218
e-value: 1400.0
score: 0.9
coord: 68..84
e-value: 13.0
score: 13.7
coord: 126..142
e-value: 6.3
score: 15.6
IPR003611Nuclease associated modular domain 3PFAMPF07460NUMOD3coord: 69..105
e-value: 1.8E-13
score: 50.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..404
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..397
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..139
NoneNo IPR availablePANTHERPTHR34199:SF2NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSEDcoord: 21..276
NoneNo IPR availablePANTHERPTHR34199NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSEDcoord: 21..276
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..440
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:416121..418499 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5645.t1Gchil5645.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000015_pilon 416121..418499 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5645.t1 ID=Gchil5645.t1|Name=Gchil5645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=441bp
MSQTRTALFVSSATMAAAAAAAAAASPPPPPLPPPRICAAVPRRASAAAD
SASVSVAARAPLPPPGRSGRKHTAESRRKIADANRGNVPWNKGRPHSPET
RRKIAENTRKAMLRPEMRQLLKQRATGRRHSESTKVKIRASTRSARATSA
SASSRPSRRPRRAPLPFAFDAPVVARLDRAIADQIRSSFRRESSGRRYVV
APARPLSDTTRAKLSLSIKRLWADPDYRARVARGVQQRQRALSAQRLAHS
DPADPLAPTPARDSSPRSRPRHAAPGSQLLSPAQPEPQLPPADHDILLRP
EDIDGITMDDLGITDLHQEGIVGIGQKGVPVNRAQLALHFPQSLCVQRCV
AEQWNPGNGHPGNGHPGSGHPGSNHPGRGKPASGTPSSVSSSGVGKAARR
PQSAHHKRFEKVRLVWVIVEVLNEQIFMSGTITTTLVLSI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003611NUMOD3