Gchil5645.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5645.t1
Unique NameGchil5645.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:416121..418499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5645Gchil5645Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 416121..418499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5645.t1Gchil5645.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 416121..418499 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5645.t1.stop1Gchil5645.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 416121..416123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5645.t1.CDS1Gchil5645.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 416121..416384 -
Gchil5645.t1.CDS2Gchil5645.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 416487..416504 -
Gchil5645.t1.CDS3Gchil5645.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 416594..416665 -
Gchil5645.t1.CDS4Gchil5645.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 416783..416788 -
Gchil5645.t1.CDS5Gchil5645.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 417537..418499 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5645.t1.exon1Gchil5645.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 416121..416384 -
Gchil5645.t1.exon2Gchil5645.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 416487..416504 -
Gchil5645.t1.exon3Gchil5645.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 416594..416665 -
Gchil5645.t1.exon4Gchil5645.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 416783..416788 -
Gchil5645.t1.exon5Gchil5645.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 417537..418499 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5645.t1.intron1Gchil5645.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 416385..416486 -
Gchil5645.t1.intron2Gchil5645.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 416505..416593 -
Gchil5645.t1.intron3Gchil5645.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 416666..416782 -
Gchil5645.t1.intron4Gchil5645.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 416789..417536 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5645.t1.start1Gchil5645.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 418497..418499 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5645.t1 ID=Gchil5645.t1|Name=Gchil5645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp
MSQTRTALFVSSATMAAAAAAAAAASPPPPPLPPPRICAAVPRRASAAAD
SASVSVAARAPLPPPGRSGRKHTAESRRKIADANRGNVPWNKGRPHSPET
RRKIAENTRKAMLRPEMRQLLKQRATGRRHSESTKVKIRASTRSARATSA
SASSRPSRRPRRAPLPFAFDAPVVARLDRAIADQIRSSFRRESSGRRYVV
APARPLSDTTRAKLSLSIKRLWADPDYRARVARGVQQRQRALSAQRLAHS
DPADPLAPTPARDSSPRSRPRHAAPGSQLLSPAQPEPQLPPADHDILLRP
EDIDGITMDDLGITDLHQEGIVGIGQKGVPVNRAQLALHFPQSLCVQRCV
AEQWNPGNGHPGNGHPGSGHPGSNHPGRGKPASGTPSSVSSSGVGKAARR
PQSAHHKRFEKVRLVWVIVEVLNEQIFMSGTITTTLVLSI*
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spliced messenger RNA

>Gchil5645.t1 ID=Gchil5645.t1|Name=Gchil5645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000015_pilon:416121..418499- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAGACGCGTACCGCGCTGTTCGTGTCCAGCGCGACGATGGCCGC
TGCAGCCGCAGCCGCCGCCGCCGCGTCGCCGCCGCCGCCGCCGCTGCCGC
CGCCGCGCATTTGTGCTGCCGTGCCGCGCCGCGCTTCCGCTGCTGCTGAT
TCTGCTTCTGTCTCTGTTGCCGCGCGCGCGCCGCTGCCGCCGCCGGGGCG
GTCGGGGCGCAAGCATACGGCCGAGAGCCGGCGCAAGATCGCCGACGCCA
ACCGTGGCAACGTGCCGTGGAACAAGGGCCGCCCGCACTCGCCCGAGACG
CGCCGCAAGATCGCCGAAAACACGCGCAAGGCCATGCTGCGTCCGGAGAT
GCGTCAGCTGCTCAAGCAGCGCGCCACCGGCCGACGCCACTCCGAAAGCA
CAAAGGTCAAGATCCGCGCCTCCACGCGCTCGGCGCGCGCCACCTCCGCC
TCCGCTTCTTCGCGCCCGTCGCGCCGCCCGCGCCGCGCTCCACTACCCTT
CGCCTTCGACGCGCCCGTCGTCGCTCGCCTGGATCGCGCCATCGCCGACC
AGATTCGCTCCTCCTTTCGCCGCGAGTCCTCTGGCCGTCGCTACGTCGTG
GCCCCCGCCCGCCCGCTGTCCGACACCACGCGCGCAAAGCTCAGCCTCAG
CATCAAGCGCCTGTGGGCTGACCCTGACTATCGCGCTCGTGTCGCGCGCG
GCGTGCAGCAGCGCCAGCGCGCCCTCTCCGCCCAGCGCCTCGCCCATTCT
GATCCCGCCGATCCTCTTGCCCCCACCCCCGCCCGCGACTCATCACCCCG
CTCTCGCCCACGCCACGCCGCGCCCGGCTCTCAGCTGCTGTCTCCCGCCC
AACCCGAGCCGCAGTTGCCCCCCGCCGACCACGACATTCTGCTGCGTCCG
GAGGACATTGACGGAATCACAATGGACGACTTGGGCATCACAGACCTGCA
CCAAGAGGGAATTGTCGGCATTGGGCAGAAGGGTGTCCCTGTGAACCGCG
CACAACTGGCTTTACATTTTCCGCAGTCACTCTGCGTTCAGCGATGTGTG
GCTGAACAGTGGAACCCTGGCAACGGCCACCCTGGCAACGGCCACCCTGG
CAGCGGCCACCCTGGCAGCAACCACCCTGGCAGAGGCAAGCCTGCCAGCG
GCACGCCTAGCAGCGTTTCGAGTAGCGGTGTCGGTAAAGCTGCCCGCAGA
CCGCAATCTGCCCACCACAAGCGTTTTGAAAAAGTACGTCTTGTTTGGGT
CATTGTCGAGGTGTTGAACGAGCAAATTTTCATGTCTGGGACCATTACGA
CTACCTTGGTGCTTAGTATTTGA
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protein sequence of Gchil5645.t1

>Gchil5645.t1 ID=Gchil5645.t1|Name=Gchil5645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=441bp
MSQTRTALFVSSATMAAAAAAAAAASPPPPPLPPPRICAAVPRRASAAAD
SASVSVAARAPLPPPGRSGRKHTAESRRKIADANRGNVPWNKGRPHSPET
RRKIAENTRKAMLRPEMRQLLKQRATGRRHSESTKVKIRASTRSARATSA
SASSRPSRRPRRAPLPFAFDAPVVARLDRAIADQIRSSFRRESSGRRYVV
APARPLSDTTRAKLSLSIKRLWADPDYRARVARGVQQRQRALSAQRLAHS
DPADPLAPTPARDSSPRSRPRHAAPGSQLLSPAQPEPQLPPADHDILLRP
EDIDGITMDDLGITDLHQEGIVGIGQKGVPVNRAQLALHFPQSLCVQRCV
AEQWNPGNGHPGNGHPGSGHPGSNHPGRGKPASGTPSSVSSSGVGKAARR
PQSAHHKRFEKVRLVWVIVEVLNEQIFMSGTITTTLVLSI*
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mRNA from alignment at tig00000015_pilon:416121..418499-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5645.t1 ID=Gchil5645.t1|Name=Gchil5645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2379bp|location=Sequence derived from alignment at tig00000015_pilon:416121..418499- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAGACGCGTACCGCGCTGTTCGTGTCCAGCGCGACGATGGCCGC
TGCAGCCGCAGCCGCCGCCGCCGCGTCGCCGCCGCCGCCGCCGCTGCCGC
CGCCGCGCATTTGTGCTGCCGTGCCGCGCCGCGCTTCCGCTGCTGCTGAT
TCTGCTTCTGTCTCTGTTGCCGCGCGCGCGCCGCTGCCGCCGCCGGGGCG
GTCGGGGCGCAAGCATACGGCCGAGAGCCGGCGCAAGATCGCCGACGCCA
ACCGTGGCAACGTGCCGTGGAACAAGGGCCGCCCGCACTCGCCCGAGACG
CGCCGCAAGATCGCCGAAAACACGCGCAAGGCCATGCTGCGTCCGGAGAT
GCGTCAGCTGCTCAAGCAGCGCGCCACCGGCCGACGCCACTCCGAAAGCA
CAAAGGTCAAGATCCGCGCCTCCACGCGCTCGGCGCGCGCCACCTCCGCC
TCCGCTTCTTCGCGCCCGTCGCGCCGCCCGCGCCGCGCTCCACTACCCTT
CGCCTTCGACGCGCCCGTCGTCGCTCGCCTGGATCGCGCCATCGCCGACC
AGATTCGCTCCTCCTTTCGCCGCGAGTCCTCTGGCCGTCGCTACGTCGTG
GCCCCCGCCCGCCCGCTGTCCGACACCACGCGCGCAAAGCTCAGCCTCAG
CATCAAGCGCCTGTGGGCTGACCCTGACTATCGCGCTCGTGTCGCGCGCG
GCGTGCAGCAGCGCCAGCGCGCCCTCTCCGCCCAGCGCCTCGCCCATTCT
GATCCCGCCGATCCTCTTGCCCCCACCCCCGCCCGCGACTCATCACCCCG
CTCTCGCCCACGCCACGCCGCGCCCGGCTCTCAGCTGCTGTCTCCCGCCC
AACCCGAGCCGCAGTTGCCCCCCGCCGACCACGACATTCTGCTGCGTCCG
GAGGACATTGACGGAATCACAATGGACGACTTGGGCATCACAGACCTGCA
CCAAGAGGGAATTGTGCTTCCTCGCTCCCCACTATCACCTTCTTTCTTCA
CCGCCGACCACTCATCCTCCTCATCTTCTTCTTCATCTCCATTCGATGCC
CACCAAACGCACCAACCGCTTTTGGACCTCGACAGCATGTTGGACTCAAT
CGACGACCACGCAATCGGCCACCACCTCCACCACCAACCACAACACCAAC
AACAACAGCAACCACAACACACCAATCAACCCGCACCTGGAGCGCAATCC
ATGTGCAACACCCCCGACTCCCACCACGTGGACCCGCCCCTCTTCGACGT
CCCCCTCCGCCTGCCTCTCGAAATGACCCACTCTGCCACCCTCAGCGCCT
TGTCCGCTCCCGACGCTTCGGAGACGTTTGAGCATAATGACCTCCTCACG
GGCGGCGCACCGCTCACTGTGTCGGGCGGCAGTGGTGGTGGTGGTGGCCG
CGGCGGCGGCTCTGATATCACCTCGCCCAACCCTCTGTTCTTCAACTTTC
CCACCGACAACACCTTTTCGCCCCTGCGCTTCTTTTAGCCTTCTGCCGTT
TTTTTCTCCCCTACTGTTGGTGCACTTCGCTGCCACTCGTTCGGCGTCGC
CGTTGAGAGCAACTGGCTCGTTGAGCAAACATGCCGCCAACTGACCCTTT
GCTCAACGCTTTTCGAGCGTCTTGTGCATGCGTCTGCACCTTTCAAACCA
CGCGCAGAGCACGTCGCCAGTTTCACTCGTATCTGTTCTCTTTGTCGGTT
CATGTCGCCAGGTCGGCGTCCGTGCCACATGCTTTCTCTCCTTTGTCACC
GCGTCACGGTGCACAATGGCCTCATGTGGTTGTAGTCCTGCCATCCCGGC
TTCCAATCACCTTTTGTCATCAACTGTCTTGTAGATTGGGCAGAAGGGTG
TCCCTGTGAACCGCGCACAACTGGCTTTACATTTTCCGCAGTCACTCTGC
GTTCAGGTGCGTATGTAAAACCATTTTAGGAAGGCAACACGCCGACATCC
AGTGCGATCTGTGGACTAACACCCGCTCTGTACACGTTCGAGAAGCGATG
TGTGGCTGAACAGGTGCCATGTGCTGCTAAACTGTATCGTAGCCTAAACA
ACTCATAACAGGCCTGGCCTTCATTCACTATCCTCGTCTGTTTGGGTCCT
CCACGTGACTGTCAGTGGAACCCTGGCAACGGCCACCCTGGCAACGGCCA
CCCTGGCAGCGGCCACCCTGGCAGCAACCACCCTGGCAGAGGCAAGCCTG
CCAGCGGCACGCCTAGCAGCGTTTCGAGTAGCGGTGTCGGTAAAGCTGCC
CGCAGACCGCAATCTGCCCACCACAAGCGTTTTGAAAAAGTACGTCTTGT
TTGGGTCATTGTCGAGGTGTTGAACGAGCAAATTTTCATGTCTGGGACCA
TTACGACTACCTTGGTGCTTAGTATTTGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:416121..418499-

>Gchil5645.t1 ID=Gchil5645.t1|Name=Gchil5645.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000015_pilon:416121..418499- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAGACGCGTACCGCGCTGTTCGTGTCCAGCGCGACGATGGCCGC
TGCAGCCGCAGCCGCCGCCGCCGCGTCGCCGCCGCCGCCGCCGCTGCCGC
CGCCGCGCATTTGTGCTGCCGTGCCGCGCCGCGCTTCCGCTGCTGCTGAT
TCTGCTTCTGTCTCTGTTGCCGCGCGCGCGCCGCTGCCGCCGCCGGGGCG
GTCGGGGCGCAAGCATACGGCCGAGAGCCGGCGCAAGATCGCCGACGCCA
ACCGTGGCAACGTGCCGTGGAACAAGGGCCGCCCGCACTCGCCCGAGACG
CGCCGCAAGATCGCCGAAAACACGCGCAAGGCCATGCTGCGTCCGGAGAT
GCGTCAGCTGCTCAAGCAGCGCGCCACCGGCCGACGCCACTCCGAAAGCA
CAAAGGTCAAGATCCGCGCCTCCACGCGCTCGGCGCGCGCCACCTCCGCC
TCCGCTTCTTCGCGCCCGTCGCGCCGCCCGCGCCGCGCTCCACTACCCTT
CGCCTTCGACGCGCCCGTCGTCGCTCGCCTGGATCGCGCCATCGCCGACC
AGATTCGCTCCTCCTTTCGCCGCGAGTCCTCTGGCCGTCGCTACGTCGTG
GCCCCCGCCCGCCCGCTGTCCGACACCACGCGCGCAAAGCTCAGCCTCAG
CATCAAGCGCCTGTGGGCTGACCCTGACTATCGCGCTCGTGTCGCGCGCG
GCGTGCAGCAGCGCCAGCGCGCCCTCTCCGCCCAGCGCCTCGCCCATTCT
GATCCCGCCGATCCTCTTGCCCCCACCCCCGCCCGCGACTCATCACCCCG
CTCTCGCCCACGCCACGCCGCGCCCGGCTCTCAGCTGCTGTCTCCCGCCC
AACCCGAGCCGCAGTTGCCCCCCGCCGACCACGACATTCTGCTGCGTCCG
GAGGACATTGACGGAATCACAATGGACGACTTGGGCATCACAGACCTGCA
CCAAGAGGGAATTGTCGGCATTGGGCAGAAGGGTGTCCCTGTGAACCGCG
CACAACTGGCTTTACATTTTCCGCAGTCACTCTGCGTTCAGCGATGTGTG
GCTGAACAGTGGAACCCTGGCAACGGCCACCCTGGCAACGGCCACCCTGG
CAGCGGCCACCCTGGCAGCAACCACCCTGGCAGAGGCAAGCCTGCCAGCG
GCACGCCTAGCAGCGTTTCGAGTAGCGGTGTCGGTAAAGCTGCCCGCAGA
CCGCAATCTGCCCACCACAAGCGTTTTGAAAAAGTACGTCTTGTTTGGGT
CATTGTCGAGGTGTTGAACGAGCAAATTTTCATGTCTGGGACCATTACGA
CTACCTTGGTGCTTAGTATTTGA
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