Gchil5398.t2 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5398.t2
Unique NameGchil5398.t2
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length137
Homology
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A2V3J6J8_9FLOR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6J8_9FLOR)

HSP 1 Score: 199 bits (505), Expect = 1.870e-57
Identity = 103/138 (74.64%), Postives = 113/138 (81.88%), Query Frame = 0
Query:    1 MVKIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPN--DQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQRFPNIQF 136
            MVKIDTPVEFPADGLDL  FQTSEVLRRR  +   Q  TTA+S+T +      D P   K+  A VR + DAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSR+A+VGEI+RSEEAYLVFYVQRFPN+QF
Sbjct:  589 MVKIDTPVEFPADGLDLSLFQTSEVLRRRHEERAPQATTTALSDTLNVSAQRRDHPSDEKA-NARVRSNNDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRIAQVGEIVRSEEAYLVFYVQRFPNVQF 725          
BLAST of Gchil5398.t2 vs. uniprot
Match: R7QQ24_CHOCR (USP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ24_CHOCR)

HSP 1 Score: 159 bits (402), Expect = 5.260e-45
Identity = 81/144 (56.25%), Postives = 104/144 (72.22%), Query Frame = 0
Query:    1 MVKIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAM--------VRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQRFPNIQF 136
            MVKIDTP+EFPADGLDL  FQTSEVLRRRD   V+     +   T         +G K+ +A         +R +++A+YDLFA+VNH G+IDSGHYTS+IR+QG W+RCDD+KVS +++V  +IRSEEAYLVFYVQR PN+Q+
Sbjct:  227 MVKIDTPIEFPADGLDLSSFQTSEVLRRRD--VVKTSSPRSTVETALLKATSAKEGGKASEAEAEKEGGLELRDTEEAIYDLFAIVNHMGKIDSGHYTSMIRKQGSWYRCDDDKVSPMSDVERVIRSEEAYLVFYVQRHPNVQY 368          
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A5J4YTP7_PORPP (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTP7_PORPP)

HSP 1 Score: 98.6 bits (244), Expect = 2.550e-21
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLR-RRDGDAVQQVGTTAVSNTT-DPPPNDQPKGPKSPK------------------AMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQR 130
            K+++ VEFP  GLDL P  TS + + RRD  A        VS  + D P    P G +SP                   ++  PS   +YDLFAVVNH G+ID GHYT+++R +  W+  DD+KVS+V   G+ IRS EAYL+FY QR
Sbjct:  638 KLESLVEFPVVGLDLTPHLTSTLRKSRRDRAAPSLENDCVVSGRSRDGPTAPHPPGHESPSNGPLQDVNQSTAVPMLGDSVREPS--CLYDLFAVVNHQGKIDRGHYTTLVRWRDHWYDLDDDKVSKVQIEGKSIRSREAYLLFYTQR 783          
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A7S0Q451_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q451_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 6.810e-17
Identity = 47/128 (36.72%), Postives = 67/128 (52.34%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQR 130
            KID  VEFP  GL +FPF ++ V  R   DA +                       S + ++  + + +YDLF V  H G + +GHYT+ +RR   WFRCDD  VS VA     +RS +AYL+FY+++
Sbjct:   91 KIDAFVEFPLQGLTMFPFTSAYVCSRGAADAAE-----------------------SGEHVLPVAPEHLYDLFGVAVHHGNMQNGHYTAFVRRGASWFRCDDATVSLVAPSE--VRSCKAYLLFYIRK 193          
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A383VCJ5_TETOB (USP domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VCJ5_TETOB)

HSP 1 Score: 84.7 bits (208), Expect = 1.910e-16
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAM-----VRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQRF 131
            K+D P+ FP  GLD+ PF TSEVLR R G +     T A  +       D  +  + P A      V   +  +Y+LF VV+H+G + SGHY S ++ +G W+  +D  V  V+E    + + +AY++FY Q +
Sbjct: 1568 KLDVPMRFPLQGLDMAPFTTSEVLRSRAGGSRCSSSTCAADDAAAAELPDAQQAAELPAAAAAGQPVSFQQQGLYELFGVVSHNGDMASGHYVSYVKCEGSWYLVNDPWVVAVSEAD--VAAVQAYMLFYAQEY 1699          
BLAST of Gchil5398.t2 vs. uniprot
Match: A9SG48_PHYPA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SG48_PHYPA)

HSP 1 Score: 84.3 bits (207), Expect = 2.380e-16
Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQR 130
            K+D  V+FP   LDL P+ +S ++R R G+ +  V   A SN    PP+  P               + ++LFAVV HSG++DSGHY S +R    W++CDD  ++RV E  + +R+ +AY+++YVQ+
Sbjct:  500 KLDRYVQFPLF-LDLLPYMSSSIVRLRHGNRLLSVSGDA-SNL---PPSQSP---------------SEFELFAVVTHSGKLDSGHYVSFLRLNKCWYKCDDAWITRVTE--DYVRASQAYMLYYVQK 605          
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A176VRK5_MARPO (USP domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VRK5_MARPO)

HSP 1 Score: 83.2 bits (204), Expect = 2.410e-16
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYV 128
            K+D  ++FP   LD+ P+ +S ++R R G+ +  V T  +  +  P                       ++LFAVV HSG++DSGHY S IR  G+W++CDD  V+RV+E  E++R+ + Y+++YV
Sbjct:  181 KVDRYMQFPFS-LDMAPYISSAIVRSRHGNRLLFVETEEMWASQSP--------------------STEFELFAVVTHSGKLDSGHYVSFIRLAGQWYKCDDAWVTRVSE--EVVRASQGYMLYYV 283          
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A7J7QP49_9CHLO (USP domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QP49_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 3.320e-16
Identity = 50/148 (33.78%), Postives = 74/148 (50.00%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLRRRDG----------------DAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAMVRP---SKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQRF 131
            K+D P+ FP  GLD+ PF TSEVLR R G                DA       A + +   PP++Q  G  +  A   P    +  +Y+LF VV+H G + SGHY S ++ +G W+  +D  V  V+E    +   +AY++FY Q +
Sbjct:  347 KLDVPMRFPLQGLDMAPFTTSEVLRSRAGGSRCSSSSATDADAAGDAAAGRAGPAAARSHGKPPDEQQTGAGAGAASEGPVSFPQQCLYELFGVVSHHGDMASGHYVSYVKCEGHWYLVNDPWVVAVSEAD--VAQVQAYMLFYAQEY 492          
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A2R6WW55_MARPO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WW55_MARPO)

HSP 1 Score: 83.2 bits (204), Expect = 6.060e-16
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYV 128
            K+D  ++FP   LD+ P+ +S ++R R G+ +  V T  +  +  P                       ++LFAVV HSG++DSGHY S IR  G+W++CDD  V+RV+E  E++R+ + Y+++YV
Sbjct:  502 KVDRYMQFPFS-LDMAPYISSAIVRSRHGNRLLFVETEEMWASQSP--------------------STEFELFAVVTHSGKLDSGHYVSFIRLAGQWYKCDDAWVTRVSE--EVVRASQGYMLYYV 604          
BLAST of Gchil5398.t2 vs. uniprot
Match: A0A197JDW8_9FUNG (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JDW8_9FUNG)

HSP 1 Score: 82.0 bits (201), Expect = 1.510e-15
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 0
Query:    3 KIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPPNDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWFRCDDEKVSRVAEVGEIIRSEEAYLVFYVQR 130
            KI+T ++FPA  LD+  + TS   R+     + ++   + S    P     P    S  A + P    VY+LFAV+NH G++D+GHYT+  + +GEWF  DD KV+ +A   E++ S+ AY++FYV++
Sbjct:  440 KIETKIKFPAQ-LDMTQYTTSA--RKSKKSKLLKLNGGSGSENGSPSNASTPSSTTSSHAALEPIPTYVYNLFAVINHQGKMDTGHYTAFAKHRGEWFSLDDHKVT-LATQKEVLDSK-AYMLFYVKQ 562          
The following BLAST results are available for this feature:
BLAST of Gchil5398.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6J8_9FLOR1.870e-5774.64Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Grac... [more]
R7QQ24_CHOCR5.260e-4556.25USP domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A5J4YTP7_PORPP2.550e-2141.89Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Porp... [more]
A0A7S0Q451_9EUKA6.810e-1736.72Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A383VCJ5_TETOB1.910e-1635.07USP domain-containing protein n=1 Tax=Tetradesmus ... [more]
A9SG48_PHYPA2.380e-1637.50Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phys... [more]
A0A176VRK5_MARPO2.410e-1634.92USP domain-containing protein n=1 Tax=Marchantia p... [more]
A0A7J7QP49_9CHLO3.320e-1633.78USP domain-containing protein n=1 Tax=Scenedesmus ... [more]
A0A2R6WW55_MARPO6.060e-1634.92Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Marc... [more]
A0A197JDW8_9FUNG1.510e-1536.72Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Linn... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10Cysteine proteinasescoord: 1..130
e-value: 5.3E-27
score: 96.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..63
NoneNo IPR availablePANTHERPTHR21646UBIQUITIN CARBOXYL-TERMINAL HYDROLASEcoord: 3..130
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 3..127
e-value: 1.3E-17
score: 64.3
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 72..89
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 1..130
score: 18.945583
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 2..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1483504..1483914 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5398.t2Gchil5398.t2Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 1483504..1483914 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5398.t2 ID=Gchil5398.t2|Name=Gchil5398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=137bp
MVKIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPP
NDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWF
RCDDEKVSRVAEVGEIIRSEEAYLVFYVQRFPNIQF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf