Gchil5398.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5398.t2
Unique NameGchil5398.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1483504..1483914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S75_43V6.1
Preferred nameUBP22
PFAMsUCH,zf-UBP
Max annot lvl35493|Streptophyta
KEGG koko:K11366
Evalue7.68e-17
EggNOG OGsKOG1867@1|root,KOG1867@2759|Eukaryota,37HRE@33090|Viridiplantae,3GDSP@35493|Streptophyta
EC3.4.19.12
DescriptionUbiquitin carboxyl-terminal hydrolase
COG categoryO
BRITEko00000,ko01000,ko01002,ko03021,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5398Gchil5398Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1483504..1485654 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5398.t2.stop1Gchil5398.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1483504..1483506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5398.t2.CDS1Gchil5398.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1483504..1483914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5398.t2.exon1Gchil5398.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1483504..1483914 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5398.t2.start1Gchil5398.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1483912..1483914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5398.t2Gchil5398.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1483504..1483914 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5398.t2 ID=Gchil5398.t2|Name=Gchil5398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=137bp
MVKIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPP
NDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWF
RCDDEKVSRVAEVGEIIRSEEAYLVFYVQRFPNIQF*
back to top

spliced messenger RNA

>Gchil5398.t2 ID=Gchil5398.t2|Name=Gchil5398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00004418_pilon:1483504..1483914- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGATAGATACACCTGTAGAGTTTCCGGCCGATGGCTTGGACCT
ATTTCCGTTTCAAACCTCAGAGGTTCTGCGCAGGCGGGATGGGGATGCTG
TACAACAAGTAGGGACAACAGCGGTGTCGAACACGACTGACCCACCACCG
AATGATCAACCGAAAGGACCTAAATCACCAAAGGCAATGGTACGCCCCAG
CAAGGACGCGGTGTACGATCTATTTGCTGTGGTTAACCATAGTGGACGAA
TAGACAGTGGACACTATACCTCCATAATAAGGAGACAAGGGGAATGGTTT
CGATGTGACGACGAGAAGGTGAGCAGAGTCGCCGAGGTTGGCGAGATCAT
TCGCAGTGAAGAGGCGTACCTTGTGTTCTATGTGCAGCGCTTTCCAAACA
TACAATTCTAG
back to top

protein sequence of Gchil5398.t2

>Gchil5398.t2 ID=Gchil5398.t2|Name=Gchil5398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=137bp
MVKIDTPVEFPADGLDLFPFQTSEVLRRRDGDAVQQVGTTAVSNTTDPPP
NDQPKGPKSPKAMVRPSKDAVYDLFAVVNHSGRIDSGHYTSIIRRQGEWF
RCDDEKVSRVAEVGEIIRSEEAYLVFYVQRFPNIQF*
back to top

mRNA from alignment at tig00004418_pilon:1483504..1483914-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5398.t2 ID=Gchil5398.t2|Name=Gchil5398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00004418_pilon:1483504..1483914- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAAGATAGATACACCTGTAGAGTTTCCGGCCGATGGCTTGGACCT
ATTTCCGTTTCAAACCTCAGAGGTTCTGCGCAGGCGGGATGGGGATGCTG
TACAACAAGTAGGGACAACAGCGGTGTCGAACACGACTGACCCACCACCG
AATGATCAACCGAAAGGACCTAAATCACCAAAGGCAATGGTACGCCCCAG
CAAGGACGCGGTGTACGATCTATTTGCTGTGGTTAACCATAGTGGACGAA
TAGACAGTGGACACTATACCTCCATAATAAGGAGACAAGGGGAATGGTTT
CGATGTGACGACGAGAAGGTGAGCAGAGTCGCCGAGGTTGGCGAGATCAT
TCGCAGTGAAGAGGCGTACCTTGTGTTCTATGTGCAGCGCTTTCCAAACA
TACAATTCTAG
back to top

Coding sequence (CDS) from alignment at tig00004418_pilon:1483504..1483914-

>Gchil5398.t2 ID=Gchil5398.t2|Name=Gchil5398.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00004418_pilon:1483504..1483914- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAAGATAGATACACCTGTAGAGTTTCCGGCCGATGGCTTGGACCT
ATTTCCGTTTCAAACCTCAGAGGTTCTGCGCAGGCGGGATGGGGATGCTG
TACAACAAGTAGGGACAACAGCGGTGTCGAACACGACTGACCCACCACCG
AATGATCAACCGAAAGGACCTAAATCACCAAAGGCAATGGTACGCCCCAG
CAAGGACGCGGTGTACGATCTATTTGCTGTGGTTAACCATAGTGGACGAA
TAGACAGTGGACACTATACCTCCATAATAAGGAGACAAGGGGAATGGTTT
CGATGTGACGACGAGAAGGTGAGCAGAGTCGCCGAGGTTGGCGAGATCAT
TCGCAGTGAAGAGGCGTACCTTGTGTTCTATGTGCAGCGCTTTCCAAACA
TACAATTCTAG
back to top