Gchil5390.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5390.t1
Unique NameGchil5390.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length119
Homology
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BLAST of Gchil5390.t1 vs. uniprot
Match: UPI0005EBE8B2 (pseudouridine-5'-phosphate glycosidase n=1 Tax=Deinococcus pimensis TaxID=309888 RepID=UPI0005EBE8B2)

HSP 1 Score: 71.6 bits (174), Expect = 1.300e-12
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 0 
Query:    1 MSIRVIPIAVALEPDGNMSVSVIIFPSAVEGFNMIPTGGCGCVHRGLSHLLDISPDILALAFIPEPVVSTEVNSILDIRNTSEMLEATSMPSLELHSHTFPANMHRSS 108
            +S+R +P+AVAL   G  +V+  +  +++ G  +  TGG G VHRG +  +D+S D+  LA     VVS  V SILDI  T E LE   +P L L +  FPA   R S
Sbjct:   43 LSLRDLPVAVALGQHGATTVATTMRIASMAGIRVFATGGTGGVHRGAAATMDVSADLTELAQTDVAVVSAGVKSILDIGLTLEKLETLGVPVLGLGTDDFPAFYSRVS 150
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BLAST of Gchil5390.t1 vs. uniprot
Match: UPI001379555E (pseudouridine-5'-phosphate glycosidase n=1 Tax=Deinococcus alpinitundrae TaxID=468913 RepID=UPI001379555E)

HSP 1 Score: 71.6 bits (174), Expect = 2.190e-12
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:    1 MSIRVIPIAVALEPDGNMSVSVIIFPSAVEGFNMIPTGGCGCVHRGLSHLLDISPDILALAFIPEPVVSTEVNSILDIRNTSEMLEATSMPSLELHSHTFPANMHRSS 108
            +S+R +P+ VA+   G  +V+  +  +A+ G  +  TGG G VHRG     DIS D++ LA  P  VVS  V SILDI  T E LE   +P +   +  FPA   R S
Sbjct:   88 ISVRDLPMTVAMGGHGATTVATTMRVAALAGIRVFATGGTGGVHRGAGQTFDISADLMELARTPVAVVSAGVKSILDIGLTLEYLETQGVPVIGFGAGGFPAFYSRES 195
The following BLAST results are available for this feature:
BLAST of Gchil5390.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0005EBE8B21.300e-1240.74pseudouridine-5'-phosphate glycosidase n=1 Tax=Dei... [more]
UPI001379555E2.190e-1239.81pseudouridine-5'-phosphate glycosidase n=1 Tax=Dei... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022830Indigoidine synthase A-likeGENE3D3.40.1790.10Indigoidine synthase domaincoord: 1..117
e-value: 3.6E-20
score: 74.2
IPR022830Indigoidine synthase A-likeSUPERFAMILY110581Indigoidine synthase A-likecoord: 3..116
IPR007342Pseudouridine-5'-phosphate glycosidasePFAMPF04227Indigoidine_Acoord: 2..115
e-value: 4.5E-19
score: 68.8
IPR007342Pseudouridine-5'-phosphate glycosidasePANTHERPTHR42909ZGC:136858coord: 4..110
NoneNo IPR availablePANTHERPTHR42909:SF3BNAA06G02750D PROTEINcoord: 4..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1448332..1448688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5390.t1Gchil5390.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 1448332..1448688 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5390.t1 ID=Gchil5390.t1|Name=Gchil5390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=119bp
MSIRVIPIAVALEPDGNMSVSVIIFPSAVEGFNMIPTGGCGCVHRGLSHL
LDISPDILALAFIPEPVVSTEVNSILDIRNTSEMLEATSMPSLELHSHTF
PANMHRSSCEPSPATLHF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022830Indigdn_synthA-like
IPR007342PsuG