Gchil5390.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5390.t1
Unique NameGchil5390.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1448332..1448688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog684949.ATTJ01000001_gene1757
Preferred namepsuG
PFAMsIndigoidine_A
Max annot lvl1297|Deinococcus-Thermus
KEGG rclassRC00432,RC00433
KEGG koko:K16329
KEGG ReactionR01055
KEGG Pathwayko00240,map00240
Evalue2.76e-15
EggNOG OGsCOG2313@1|root,COG2313@2|Bacteria,1WIPH@1297|Deinococcus-Thermus
EC4.2.1.70
DescriptionCatalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5390Gchil5390Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1448332..1448688 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5390.t1.start1Gchil5390.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1448332..1448334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5390.t1.CDS1Gchil5390.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1448332..1448688 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5390.t1.exon1Gchil5390.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1448332..1448688 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5390.t1.stop1Gchil5390.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1448686..1448688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5390.t1Gchil5390.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1448332..1448688 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5390.t1 ID=Gchil5390.t1|Name=Gchil5390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=119bp
MSIRVIPIAVALEPDGNMSVSVIIFPSAVEGFNMIPTGGCGCVHRGLSHL
LDISPDILALAFIPEPVVSTEVNSILDIRNTSEMLEATSMPSLELHSHTF
PANMHRSSCEPSPATLHF*
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spliced messenger RNA

>Gchil5390.t1 ID=Gchil5390.t1|Name=Gchil5390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00004418_pilon:1448332..1448688+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTATTAGAGTCATTCCCATTGCAGTCGCTCTGGAACCAGACGGCAA
CATGTCCGTATCTGTCATTATTTTTCCCTCTGCCGTGGAAGGTTTCAACA
TGATTCCAACTGGAGGGTGTGGTTGTGTGCATCGAGGTCTTTCTCATCTG
CTGGATATTTCGCCCGACATTCTGGCGCTCGCATTCATTCCAGAACCAGT
CGTGTCCACTGAAGTCAATTCTATCCTCGATATACGCAACACATCTGAAA
TGTTGGAAGCTACCTCCATGCCCTCGCTGGAATTGCATTCGCACACGTTC
CCAGCCAACATGCATCGCTCGTCTTGCGAGCCGTCTCCAGCTACGCTACA
TTTCTGA
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protein sequence of Gchil5390.t1

>Gchil5390.t1 ID=Gchil5390.t1|Name=Gchil5390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=119bp
MSIRVIPIAVALEPDGNMSVSVIIFPSAVEGFNMIPTGGCGCVHRGLSHL
LDISPDILALAFIPEPVVSTEVNSILDIRNTSEMLEATSMPSLELHSHTF
PANMHRSSCEPSPATLHF*
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mRNA from alignment at tig00004418_pilon:1448332..1448688+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5390.t1 ID=Gchil5390.t1|Name=Gchil5390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00004418_pilon:1448332..1448688+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTATTAGAGTCATTCCCATTGCAGTCGCTCTGGAACCAGACGGCAA
CATGTCCGTATCTGTCATTATTTTTCCCTCTGCCGTGGAAGGTTTCAACA
TGATTCCAACTGGAGGGTGTGGTTGTGTGCATCGAGGTCTTTCTCATCTG
CTGGATATTTCGCCCGACATTCTGGCGCTCGCATTCATTCCAGAACCAGT
CGTGTCCACTGAAGTCAATTCTATCCTCGATATACGCAACACATCTGAAA
TGTTGGAAGCTACCTCCATGCCCTCGCTGGAATTGCATTCGCACACGTTC
CCAGCCAACATGCATCGCTCGTCTTGCGAGCCGTCTCCAGCTACGCTACA
TTTCTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1448332..1448688+

>Gchil5390.t1 ID=Gchil5390.t1|Name=Gchil5390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00004418_pilon:1448332..1448688+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTATTAGAGTCATTCCCATTGCAGTCGCTCTGGAACCAGACGGCAA
CATGTCCGTATCTGTCATTATTTTTCCCTCTGCCGTGGAAGGTTTCAACA
TGATTCCAACTGGAGGGTGTGGTTGTGTGCATCGAGGTCTTTCTCATCTG
CTGGATATTTCGCCCGACATTCTGGCGCTCGCATTCATTCCAGAACCAGT
CGTGTCCACTGAAGTCAATTCTATCCTCGATATACGCAACACATCTGAAA
TGTTGGAAGCTACCTCCATGCCCTCGCTGGAATTGCATTCGCACACGTTC
CCAGCCAACATGCATCGCTCGTCTTGCGAGCCGTCTCCAGCTACGCTACA
TTTCTGA
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