Gchil5375.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5375.t1
Unique NameGchil5375.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length238
Homology
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A2V3J6B5_9FLOR (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B5_9FLOR)

HSP 1 Score: 327 bits (837), Expect = 3.090e-111
Identity = 168/207 (81.16%), Postives = 190/207 (91.79%), Query Frame = 0
Query:   33 MAFKNEGSNVPIRDRARDELRECRSLISSLFVAQADMLKSVPTGNEEGQRVT---RDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLGAMDVEEDKGGESSEKAR 236
            M   N  SNVPIRDRARDELRECRSLISSLFVAQA++LKS+ T +++G+R+    RD T ESVQ+MEKLV QVKSFH+V+EQVL+HQRL+GIIE+LRKANSVEDAKI+HLGANLRAAESVLQN+LDEA+PRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDP+QPLGN LPPAPTEEMMRAGKLGA+++EE+KG E SEKAR
Sbjct:    1 MVQHNHASNVPIRDRARDELRECRSLISSLFVAQANLLKSISTASDDGKRIKDTKRDPTQESVQIMEKLVTQVKSFHSVMEQVLEHQRLHGIIEELRKANSVEDAKIAHLGANLRAAESVLQNSLDEAKPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPSQPLGNFLPPAPTEEMMRAGKLGAVEMEEEKGAELSEKAR 207          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A7S0BGG5_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGG5_9RHOD)

HSP 1 Score: 118 bits (295), Expect = 1.470e-29
Identity = 68/183 (37.16%), Postives = 108/183 (59.02%), Query Frame = 0
Query:   37 NEGSNVPIRDRARDELRECRSLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLG 219
            ++ S +P RDRAR ELRE  SL+  L +   D+  S   G   G+ V +       ++ ++L+ + K   +++++++ HQ +N +IE +R +   E+ K+  LG  LR AE  LQ    +   R+AA + A K  ++V +++   +KI +S +AP  W PT+PLGN LPPAP EEMMR+G LG
Sbjct:    2 DDSSAIPARDRARVELREFESLVR-LLIQYFDLSAS---GRMPGEDVLQPD-----RIAQELIERQKVLRSIVDELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLRGAELCLQGPDIDHEARIAALEGAKK--VNVKDIVELAAKIGSSYAAPPNWTPTEPLGNHLPPAPPEEMMRSGHLG 173          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A7S2ZT46_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT46_9RHOD)

HSP 1 Score: 117 bits (293), Expect = 1.720e-28
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 0
Query:   38 EGSNVPIRDRARDELRECRSLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLGAMDVEEDK 227
            + S +P RDRAR ELRE  SL+  L +   D+  S       G+  + D      ++ ++L+ + K   ++  +++ HQ +N +IE +R +   E+ K+  LG  LR AE  LQ    +   R+AA + A K  ++V +++   +KI +S SAP  W PT+PLGN LPPAPTEEMMR+G LG + ++  K
Sbjct:    3 DSSAIPARDRARVELREIESLVR-LLIQYFDLSAS-------GRMPSEDVLQPD-RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLGKVRMDPPK 181          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A7S2ZU48_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU48_9RHOD)

HSP 1 Score: 99.4 bits (246), Expect = 1.250e-22
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 0
Query:   93 QVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLG 219
            ++ ++L+ + K   ++  +++ HQ +N +IE +R +   E+ K+  LG  LR AE  LQ    +   R+AA + A K  ++V +++   +KI +S SAP  W PT+PLGN LPPAPTEEMMR+G LG
Sbjct:   20 RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLG 144          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A1X6P309_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P309_PORUM)

HSP 1 Score: 103 bits (257), Expect = 9.500e-22
Identity = 63/188 (33.51%), Postives = 95/188 (50.53%), Query Frame = 0
Query:   34 AFKNEGSNVPIRDRARDELRECRSLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLGAM 221
            A ++  ++VP+RDRAR  LRECRSL++ LF A   ++         G R++ +   +  QVME             +++ +HQR    I  L                         Q ALD ARPRL A   +  RP+ V  +I+ G++++ +++AP GW P QPLG S+PPA T+E M  G+L A+
Sbjct:   94 AARDFDASVPVRDRARTVLRECRSLVARLFEAVDALV---------GGRMSSEAVMQPEQVMEAXXXXXXXXXXXXDELTEHQRTAATIARLTAXXXXXXXXXXXXXXXXXXXXXXXQGALDAARPRLVAAAASAARPLPVPALIAAGARLAPAIAAPPGWAPPQPLGGSVPPAVTDEAMWGGRLAAL 272          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A1B6DGF2_9HEMI (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DGF2_9HEMI)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-11
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   90 ESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISAS--LSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLGAMD 222
            E + + E LV++      ++    +  ++N  ++ L+     +D  I  L   L+ AE VL  A+ +AR +L A  RANKRP+  +E+I +  +ISAS  + APL W P    G+   P PT+  MR G LG M+
Sbjct:   44 EQLHLTELLVSKDNELKEMLNLASEQAKINQKMDILKAEVEQQDQDIQQLQRQLKEAEQVLATAIFQARQKLQAINRANKRPVPSEELIKFAHRISASNAVCAPLTWQP----GDPRRPYPTDIEMRLGFLGRMN 174          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A423SZI8_PENVA (Mediator of RNA polymerase II transcription subunit 4 n=6 Tax=Penaeus TaxID=133894 RepID=A0A423SZI8_PENVA)

HSP 1 Score: 66.6 bits (161), Expect = 1.490e-9
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 0
Query:   57 SLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISAS--LSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLG 219
            SLI    +   ++L+     N    +  R + ++  Q++E L+ +       I+   D  R+  I+E ++      D  I  L   L  A   L  AL +AR +L +  RANKRP++ +E+I Y  +IS++  +SAP  W      G+   P PT+  MRAG LG
Sbjct:   12 SLIDDTELISKELLE-----NSIAPKAQRLSAHDQAQLIELLIHKDTELKETIKLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQ----GDPRRPYPTDLEMRAGYLG 167          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A444SYH5_ARMVU (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SYH5_ARMVU)

HSP 1 Score: 65.5 bits (158), Expect = 3.510e-9
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 0
Query:   77 NEEGQRVTRDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISA--SLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLG 219
            N    +  R ++NE  Q+++ L+ + +     ++   +   + GI+E ++      +  I  L   L  A   L  AL +AR +L +  RANKRP++ +E+I Y  +IS+  S++AP  W      G+   P PT+  MRAG LG
Sbjct:   27 NSVAPKPQRLSSNEQTQLIQLLLTKDEELKETMKVAGEQAVVAGIMESVQAEVDKHEMMIVQLEKQLYEAAHTLSVALYQARQKLDSISRANKRPVNSEELIKYAHRISSTYSVAAPTNWQQ----GDPRRPYPTDHEMRAGFLG 167          
BLAST of Gchil5375.t1 vs. uniprot
Match: A0A8J5KFL0_HOMAM (Mediator of RNA polymerase II transcription subunit 4-like (Fragment) n=5 Tax=Astacidea TaxID=6712 RepID=A0A8J5KFL0_HOMAM)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-7
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 0
Query:   77 NEEGQRVTRDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISA--SLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLG 219
            N    +  R ++++  Q++E L+ +       I+   D  R+  I+E ++      D  I  L   L  A   L  AL +AR ++ +  RANKRP++ +E+I Y  +IS+  S++AP  W      G+   P P +  MRAG LG
Sbjct:   17 NSIAPKPQRLSSSDLAQLIELLILKDGELKDTIKLANDQARIASIMETVQAEVDKHDQMILQLEKQLHDAHHTLSVALYQARQKMQSIARANKRPVNSEELIKYAHRISSTYSVTAPDTWQQ----GDPRRPYPIDLEMRAGFLG 157          
BLAST of Gchil5375.t1 vs. uniprot
Match: UPI001C486B01 (mediator of RNA polymerase II transcription subunit 4-like isoform X1 n=3 Tax=Homarus americanus TaxID=6706 RepID=UPI001C486B01)

HSP 1 Score: 61.6 bits (148), Expect = 1.480e-7
Identity = 48/165 (29.09%), Postives = 80/165 (48.48%), Query Frame = 0
Query:   57 SLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVAQVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVLQNALDEARPRLAAFKRANKRPIDVDEVISYGSKISA--SLSAPLGWDPTQPLGNSLPPAPTEEMMRAGKLG 219
            SLI    +   ++L+     N    +  R ++++  Q++E L+ +       I+   D  R+  I+E ++      D  I  L   L  A   L  AL +AR ++ +  RANKRP++ +E+I Y  +IS+  S++AP  W      G+   P P +  MRAG LG
Sbjct:   17 SLIDDTELISKELLE-----NSIAPKPQRLSSSDLAQLIELLILKDGELKDTIKLANDQARIASIMETVQAEVDKHDQMILQLEKQLHDAHHTLSVALYQARQKMQSIARANKRPVNSEELIKYAHRISSTYSVTAPDTWQQ----GDPRRPYPIDLEMRAGFLG 172          
The following BLAST results are available for this feature:
BLAST of Gchil5375.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2V3J6B5_9FLOR3.090e-11181.16Mediator of RNA polymerase II transcription subuni... [more]
A0A7S0BGG5_9RHOD1.470e-2937.16Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZT46_9RHOD1.720e-2836.84Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZU48_9RHOD1.250e-2240.16Mediator of RNA polymerase II transcription subuni... [more]
A0A1X6P309_PORUM9.500e-2233.51Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1B6DGF2_9HEMI1.040e-1134.07Mediator of RNA polymerase II transcription subuni... [more]
A0A423SZI8_PENVA1.490e-930.30Mediator of RNA polymerase II transcription subuni... [more]
A0A444SYH5_ARMVU3.510e-930.34Mediator of RNA polymerase II transcription subuni... [more]
A0A8J5KFL0_HOMAM1.070e-730.34Mediator of RNA polymerase II transcription subuni... [more]
UPI001C486B011.480e-729.09mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 93..230
e-value: 1.2E-19
score: 70.8
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 40..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1319374..1320262 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5375.t1Gchil5375.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 1319374..1320262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5375.t1 ID=Gchil5375.t1|Name=Gchil5375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=238bp
MSSTQFLSLNPLNTIIASPQIQARQRWVAFVQMAFKNEGSNVPIRDRARD
ELRECRSLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVA
QVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVL
QNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPL
GNSLPPAPTEEMMRAGKLGAMDVEEDKGGESSEKARA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4