Gchil5375.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5375.t1
Unique NameGchil5375.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1319374..1320262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7370.XP_005186195.1
Preferred nameMED4
PFAMsMed4
Max annot lvl33208|Metazoa
KEGG koko:K14618,ko:K15146
KEGG Pathwayko04919,ko04977,map04919,map04977
GOsGO:0000428,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0014070,GO:0016070,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022008,GO:0023052,GO:0030154,GO:0030374,GO:0030518,GO:0030521,GO:0030522,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032870,GO:0032991,GO:0033993,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0038023,GO:0042127,GO:0042221,GO:0042809,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0046483,GO:0046966,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051427,GO:0051716,GO:0051960,GO:0051961,GO:0055029,GO:0060089,GO:0060255,GO:0060284,GO:0061695,GO:0065007,GO:0070013,GO:0070847,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
Evalue1.31e-15
EggNOG OGsKOG4552@1|root,KOG4552@2759|Eukaryota,38G5E@33154|Opisthokonta,3BGVP@33208|Metazoa,3CR9R@33213|Bilateria,41U6P@6656|Arthropoda,3SGB5@50557|Insecta,44ZCI@7147|Diptera
DescriptionRNA polymerase II transcription cofactor activity. It is involved in the biological process described with regulation of transcription from RNA polymerase II promoter
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5375Gchil5375Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1319374..1320262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5375.t1Gchil5375.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1319374..1320262 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5375.t1.start1Gchil5375.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1319374..1319376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5375.t1.CDS1Gchil5375.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1319374..1319591 +
Gchil5375.t1.CDS2Gchil5375.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1319705..1319820 +
Gchil5375.t1.CDS3Gchil5375.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1319883..1320262 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5375.t1.exon1Gchil5375.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1319374..1319591 +
Gchil5375.t1.exon2Gchil5375.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1319705..1319820 +
Gchil5375.t1.exon3Gchil5375.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1319883..1320262 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5375.t1.intron1Gchil5375.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1319592..1319704 +
Gchil5375.t1.intron2Gchil5375.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1319821..1319882 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5375.t1.stop1Gchil5375.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1320260..1320262 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5375.t1 ID=Gchil5375.t1|Name=Gchil5375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=238bp
MSSTQFLSLNPLNTIIASPQIQARQRWVAFVQMAFKNEGSNVPIRDRARD
ELRECRSLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVA
QVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVL
QNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPL
GNSLPPAPTEEMMRAGKLGAMDVEEDKGGESSEKARA*
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spliced messenger RNA

>Gchil5375.t1 ID=Gchil5375.t1|Name=Gchil5375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00004418_pilon:1319374..1320262+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCACCCAGTTCTTATCGCTTAATCCTTTGAACACCATCATTGC
ATCTCCGCAAATACAAGCTCGACAGCGGTGGGTGGCTTTTGTGCAGATGG
CATTCAAAAATGAAGGAAGCAATGTTCCTATTCGCGACCGCGCACGGGAT
GAACTTCGTGAATGTCGTTCTTTAATAAGCAGTTTGTTTGTAGCCCAAGC
TGACATGCTCAAGTCTGTGCCCACGGGAAACGAAGAAGGACAGCGTGTTA
CTCGCGACACGACCAACGAGAGCGTACAAGTGATGGAAAAACTTGTAGCT
CAGGTGAAATCCTTCCACGCAGTTATCGAGCAAGTTCTGGACCATCAGCG
GCTAAACGGAATAATTGAAGACCTTCGTAAGGCAAACAGTGTCGAAGACG
CAAAAATCTCTCACTTGGGTGCAAATTTGCGAGCGGCCGAATCCGTTCTG
CAGAACGCTTTGGACGAAGCTAGACCGCGTCTCGCTGCGTTCAAGCGTGC
GAACAAGCGACCAATAGATGTGGATGAAGTTATTAGTTATGGGTCAAAAA
TCAGCGCTTCTCTTTCCGCGCCCTTGGGGTGGGATCCCACTCAACCGTTG
GGTAACTCTCTGCCCCCGGCTCCAACAGAAGAGATGATGCGAGCCGGCAA
GTTGGGAGCTATGGATGTAGAAGAAGACAAAGGAGGAGAATCATCCGAAA
AGGCCCGAGCATGA
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protein sequence of Gchil5375.t1

>Gchil5375.t1 ID=Gchil5375.t1|Name=Gchil5375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=238bp
MSSTQFLSLNPLNTIIASPQIQARQRWVAFVQMAFKNEGSNVPIRDRARD
ELRECRSLISSLFVAQADMLKSVPTGNEEGQRVTRDTTNESVQVMEKLVA
QVKSFHAVIEQVLDHQRLNGIIEDLRKANSVEDAKISHLGANLRAAESVL
QNALDEARPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPTQPL
GNSLPPAPTEEMMRAGKLGAMDVEEDKGGESSEKARA*
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mRNA from alignment at tig00004418_pilon:1319374..1320262+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5375.t1 ID=Gchil5375.t1|Name=Gchil5375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=889bp|location=Sequence derived from alignment at tig00004418_pilon:1319374..1320262+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCACCCAGTTCTTATCGCTTAATCCTTTGAACACCATCATTGC
ATCTCCGCAAATACAAGCTCGACAGCGGTGGGTGGCTTTTGTGCAGATGG
CATTCAAAAATGAAGGAAGCAATGTTCCTATTCGCGACCGCGCACGGGAT
GAACTTCGTGAATGTCGTTCTTTAATAAGCAGTTTGTTTGTAGCCCAAGC
TGACATGCTCAAGTCTGTGTACGTTGTTTTCCTCACGTCTCGAAACGATT
TATTGTCGTCGCCTAGTAGCGACTGACTGCTTCATATCCCATCCAACTCG
ACTCATGGATTGCTCCTTGCAAAAACAAAAGGCCCACGGGAAACGAAGAA
GGACAGCGTGTTACTCGCGACACGACCAACGAGAGCGTACAAGTGATGGA
AAAACTTGTAGCTCAGGTGAAATCCTTCCACGCAGTTATCGAGCAAGGTA
AGACATCTCTGTCGTTCATTTCGACCCTCACATCTATCTGACGTAGCTCT
ATTTGGTAGTTCTGGACCATCAGCGGCTAAACGGAATAATTGAAGACCTT
CGTAAGGCAAACAGTGTCGAAGACGCAAAAATCTCTCACTTGGGTGCAAA
TTTGCGAGCGGCCGAATCCGTTCTGCAGAACGCTTTGGACGAAGCTAGAC
CGCGTCTCGCTGCGTTCAAGCGTGCGAACAAGCGACCAATAGATGTGGAT
GAAGTTATTAGTTATGGGTCAAAAATCAGCGCTTCTCTTTCCGCGCCCTT
GGGGTGGGATCCCACTCAACCGTTGGGTAACTCTCTGCCCCCGGCTCCAA
CAGAAGAGATGATGCGAGCCGGCAAGTTGGGAGCTATGGATGTAGAAGAA
GACAAAGGAGGAGAATCATCCGAAAAGGCCCGAGCATGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1319374..1320262+

>Gchil5375.t1 ID=Gchil5375.t1|Name=Gchil5375.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00004418_pilon:1319374..1320262+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCACCCAGTTCTTATCGCTTAATCCTTTGAACACCATCATTGC
ATCTCCGCAAATACAAGCTCGACAGCGGTGGGTGGCTTTTGTGCAGATGG
CATTCAAAAATGAAGGAAGCAATGTTCCTATTCGCGACCGCGCACGGGAT
GAACTTCGTGAATGTCGTTCTTTAATAAGCAGTTTGTTTGTAGCCCAAGC
TGACATGCTCAAGTCTGTGCCCACGGGAAACGAAGAAGGACAGCGTGTTA
CTCGCGACACGACCAACGAGAGCGTACAAGTGATGGAAAAACTTGTAGCT
CAGGTGAAATCCTTCCACGCAGTTATCGAGCAAGTTCTGGACCATCAGCG
GCTAAACGGAATAATTGAAGACCTTCGTAAGGCAAACAGTGTCGAAGACG
CAAAAATCTCTCACTTGGGTGCAAATTTGCGAGCGGCCGAATCCGTTCTG
CAGAACGCTTTGGACGAAGCTAGACCGCGTCTCGCTGCGTTCAAGCGTGC
GAACAAGCGACCAATAGATGTGGATGAAGTTATTAGTTATGGGTCAAAAA
TCAGCGCTTCTCTTTCCGCGCCCTTGGGGTGGGATCCCACTCAACCGTTG
GGTAACTCTCTGCCCCCGGCTCCAACAGAAGAGATGATGCGAGCCGGCAA
GTTGGGAGCTATGGATGTAGAAGAAGACAAAGGAGGAGAATCATCCGAAA
AGGCCCGAGCATGA
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