Gchil5302.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5302.t1
Unique NameGchil5302.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length489
Homology
BLAST of Gchil5302.t1 vs. uniprot
Match: A0A2V3IW98_9FLOR (Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW98_9FLOR)

HSP 1 Score: 493 bits (1270), Expect = 1.260e-168
Identity = 295/479 (61.59%), Postives = 341/479 (71.19%), Query Frame = 0
Query:   18 PPMSAPAAVPK--SRXXXXXYPPHTPPMIDPSNLRYMRMTPNLRDMVSGLSQPTPDPTAHISDILASPDPAPFYNSLTFASPILADLYPSPNPTSCSPLQTGPNSATHDASHRRMQRIAGARAQMNALFNSLSPTNLDTEYGSDSNHDGVISLMSTPDLRHPTSQLPLSDAT-PFLRSKPRPDALHAKSHSQPRESQSSSVTPPPDSSALSPTXXXXXXXXXXXXXXXXXXXXXXXT-RPSVNASSSKQ--SPSKPLTLKPKPSSATQRDNIKHEPQTSKTPASSSTALSSALTAPTATHTLHPNPISINSVMPGLIPYA--VPAHFSSQMLANAVSAQYSGRPVAFVPGTSPNDFLQYNMLAHATAFHLGTAQAMQAAGRALQAGMSPTTPPAKRSEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMRTQGTAVRYACRKRIAMVRPRVNGRFATKEEVEECQRGQQ 488
            PP S  A  P   S+     YPP TPPMIDPSNLRYMRMTPNLRDMVSGLSQPTPDP AH+ DILASPDP+PFYNSLTFA+PIL DLYPS +P + S L T PN+A  D + RRMQRIAGARA+MNALFN+L+PTN DTE GSDSNHDGVISL+STPDLRH  S +P  D + P+LRSKP    ++  S SQPR S+SSSVTPPPD+S LSPT                         +   N   SKQ  + +    +K  P+ ATQ+ + K  P +   P +SSTALSSAL++         N +++N  M GLIPYA  +PA FSSQM+A  + A + GRPVAFVPG    D LQYNM+A A AFH GTAQAMQ AGR LQ+ MSPT    KR + + GSRKKRRRQML+RSGC+VEQARENRARALKRLR KKSMRTQG +VRYACRKRIAMVRPRVNGRFATKEEVEE +R +Q
Sbjct:   17 PPSSTSAQAPPQHSQPVPVSYPPETPPMIDPSNLRYMRMTPNLRDMVSGLSQPTPDPAAHMHDILASPDPSPFYNSLTFATPILRDLYPSHSPITSSALPTHPNNADSDNASRRMQRIAGARAEMNALFNALTPTNPDTENGSDSNHDGVISLISTPDLRHSASHVPSVDTSNPYLRSKPEATPVNHPSDSQPRGSESSSVTPPPDTSILSPTTSPETTSTAQPVTTLKQNCSLTDAVKADDNKHHSKQRDNQNSRTDIKSDPT-ATQQKSAK--PLSKAAPGTSSTALSSALSSSVPNSHTAANAVAMNPAMAGLIPYACSLPAAFSSQMMAGQIPAHFPGRPVAFVPGNPSADLLQYNMMAQAAAFHFGTAQAMQVAGRVLQSTMSPTAAQQKRPDAIGGSRKKRRRQMLERSGCTVEQARENRARALKRLRQKKSMRTQGNSVRYACRKRIAMVRPRVNGRFATKEEVEEVRRARQ 492          
BLAST of Gchil5302.t1 vs. uniprot
Match: R7Q4Q6_CHOCR (CCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Q6_CHOCR)

HSP 1 Score: 157 bits (398), Expect = 3.930e-40
Identity = 140/373 (37.53%), Postives = 189/373 (50.67%), Query Frame = 0
Query:  130 MQRIAGARAQMNALF-NSLSPTNLDTEYGSDSNHD-GVISLMSTPDLRHPTSQLPLSDATPF-------LRSKPRPDALHAKSHSQPRESQSSSVTPP---PDSSALSPTXXXXXXXXXXXXXXXXXXXXXXXTRPSVNASSSKQSPSKPLTLKPKPSSATQRDNIKHEPQTSKTPASSSTALSSALTAPTATHTLHPNPISINSVMPGLIPYA--VPAHFSSQMLANAVSAQYSGRPVAFVPGTSPNDFLQYNMLAHATAFHLGTAQAMQAAGRALQ--AGMSPTTP-PAKRSEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMRTQGTAVRYACRKRIAMVRPRVNGRFATKEEVEECQR 485
            M++++ A A+MNALF NS++P   D+ Y SD N   G+IS+MS+P+LR+ T     S  + F                           +++SS TP    PD SA +                          + + +A   ++ PS     KP   S +               AS     S       A+  +  N  ++N  M GL+P+A  +P+     ML    +  Y GRPVAFV G +  + +  +M A ATA   G A A  A  R +   AG  P  P PA   E + GSRK+RRRQ+L+RSGC+ EQAR+NRA AL RLR KK++R+Q + VRYACRKRIAMVRPRVNGRFATKEEVEEC+R
Sbjct:    1 MEKMSAACAEMNALFCNSMNPN--DSGYRSDGNQQPGIISMMSSPELRNETGDASGSGGSGFSXXXXXXXXXXXXXXXXXXXXXXXXXXAETSSCTPTNSLPDESAKN---------EGEVAKSEALFEGSEKFKKTPSAGEKQKRPSTRTAGKPSYVSESVXXXXXXXXXXXXXAASVPPPASHVQMQMKASAMMAANAAAMNPGMAGLLPFACAMPSPMG-HMLPPPGAMHYQGRPVAFVTGANGTEIIPMDMFAQATALQYGAA-AQAAMSRMMHPVAGQGPVPPRPAPHFEAIGGSRKRRRRQLLERSGCTEEQARQNRAHALTRLRQKKTLRSQQSKVRYACRKRIAMVRPRVNGRFATKEEVEECKR 360          
The following BLAST results are available for this feature:
BLAST of Gchil5302.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IW98_9FLOR1.260e-16861.59Zinc finger protein CONSTANS-LIKE 1 n=1 Tax=Gracil... [more]
R7Q4Q6_CHOCR3.930e-4037.53CCT domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 428..448
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..429
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..186
IPR010402CCT domainPFAMPF06203CCTcoord: 435..477
e-value: 4.5E-9
score: 36.3
IPR010402CCT domainPROSITEPS51017CCTcoord: 435..477
score: 11.677238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:881334..882800 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5302.t1Gchil5302.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 881334..882800 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5302.t1 ID=Gchil5302.t1|Name=Gchil5302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=489bp
MAPTPPPAAASAHLHSAPPMSAPAAVPKSRPTPVPYPPHTPPMIDPSNLR
YMRMTPNLRDMVSGLSQPTPDPTAHISDILASPDPAPFYNSLTFASPILA
DLYPSPNPTSCSPLQTGPNSATHDASHRRMQRIAGARAQMNALFNSLSPT
NLDTEYGSDSNHDGVISLMSTPDLRHPTSQLPLSDATPFLRSKPRPDALH
AKSHSQPRESQSSSVTPPPDSSALSPTALSPTTSPEVTSKFHPAKLHNVV
TRPSVNASSSKQSPSKPLTLKPKPSSATQRDNIKHEPQTSKTPASSSTAL
SSALTAPTATHTLHPNPISINSVMPGLIPYAVPAHFSSQMLANAVSAQYS
GRPVAFVPGTSPNDFLQYNMLAHATAFHLGTAQAMQAAGRALQAGMSPTT
PPAKRSEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMRT
QGTAVRYACRKRIAMVRPRVNGRFATKEEVEECQRGQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain