Gchil5302.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5302.t1
Unique NameGchil5302.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:881334..882800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5302Gchil5302Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 881334..882800 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5302.t1.stop1Gchil5302.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 881334..881336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5302.t1.CDS1Gchil5302.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 881334..882800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5302.t1.exon1Gchil5302.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 881334..882800 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5302.t1.start1Gchil5302.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 882798..882800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5302.t1Gchil5302.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 881334..882800 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5302.t1 ID=Gchil5302.t1|Name=Gchil5302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=489bp
MAPTPPPAAASAHLHSAPPMSAPAAVPKSRPTPVPYPPHTPPMIDPSNLR
YMRMTPNLRDMVSGLSQPTPDPTAHISDILASPDPAPFYNSLTFASPILA
DLYPSPNPTSCSPLQTGPNSATHDASHRRMQRIAGARAQMNALFNSLSPT
NLDTEYGSDSNHDGVISLMSTPDLRHPTSQLPLSDATPFLRSKPRPDALH
AKSHSQPRESQSSSVTPPPDSSALSPTALSPTTSPEVTSKFHPAKLHNVV
TRPSVNASSSKQSPSKPLTLKPKPSSATQRDNIKHEPQTSKTPASSSTAL
SSALTAPTATHTLHPNPISINSVMPGLIPYAVPAHFSSQMLANAVSAQYS
GRPVAFVPGTSPNDFLQYNMLAHATAFHLGTAQAMQAAGRALQAGMSPTT
PPAKRSEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMRT
QGTAVRYACRKRIAMVRPRVNGRFATKEEVEECQRGQQ*
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spliced messenger RNA

>Gchil5302.t1 ID=Gchil5302.t1|Name=Gchil5302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00004418_pilon:881334..882800- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCACTCCGCCGCCCGCCGCCGCCTCAGCGCACTTGCACTCCGC
CCCCCCCATGTCAGCTCCCGCCGCCGTGCCCAAGTCGCGCCCGACCCCCG
TGCCCTACCCCCCTCACACCCCCCCCATGATAGACCCCTCAAATCTGCGC
TACATGCGCATGACCCCCAACCTCCGAGATATGGTCTCCGGTCTCTCACA
GCCCACCCCAGATCCCACGGCCCATATCAGCGACATTCTTGCGTCCCCCG
ACCCCGCCCCGTTTTACAACTCGCTTACCTTTGCCTCTCCTATTCTCGCA
GATCTCTACCCTTCTCCCAACCCCACTTCCTGCTCTCCGCTTCAAACCGG
CCCCAATTCCGCCACCCATGACGCCTCGCACCGCAGAATGCAGCGCATTG
CCGGCGCTCGTGCCCAGATGAATGCCCTTTTCAATTCGCTCAGCCCCACC
AACTTGGACACGGAATACGGCTCCGACAGCAACCACGACGGCGTCATCAG
CCTCATGTCCACCCCGGACCTGCGTCACCCCACTTCTCAGCTCCCCCTGT
CTGACGCCACCCCTTTCTTGCGATCCAAGCCTCGACCCGACGCACTGCAC
GCAAAGTCCCACTCGCAGCCGCGAGAGTCGCAAAGCTCTTCCGTCACACC
TCCTCCGGATTCCTCCGCGTTGTCACCTACTGCGTTGTCACCTACCACTT
CTCCAGAAGTTACGTCAAAGTTTCACCCCGCCAAACTGCACAACGTTGTC
ACCAGGCCTTCTGTCAACGCGTCGTCGTCGAAACAATCTCCTTCAAAGCC
GCTCACATTGAAACCCAAACCCTCCAGCGCCACCCAGCGGGACAACATCA
AGCACGAGCCGCAAACCTCCAAAACGCCCGCGTCGTCTTCCACCGCTCTG
TCCTCAGCGCTCACAGCTCCGACCGCAACACATACTCTCCATCCCAACCC
TATTTCTATCAACTCGGTCATGCCTGGACTCATCCCGTACGCTGTCCCTG
CGCACTTTTCTTCGCAGATGCTAGCAAACGCCGTCTCAGCGCAGTATTCA
GGCAGACCTGTCGCATTTGTACCCGGCACGTCTCCAAACGATTTTTTGCA
GTACAATATGTTGGCGCATGCTACCGCCTTTCACTTGGGAACTGCGCAAG
CAATGCAGGCAGCCGGCAGAGCGCTTCAGGCGGGAATGTCACCGACTACG
CCCCCTGCGAAACGGTCCGAGCCTATGAGCGGGAGCCGGAAGAAAAGAAG
GCGACAAATGCTGGACCGCAGCGGTTGTAGCGTGGAACAAGCCCGTGAGA
ACCGTGCCCGAGCTTTGAAAAGGCTCCGACACAAGAAGAGTATGAGAACT
CAGGGAACTGCTGTCCGATACGCTTGTCGCAAACGAATTGCTATGGTGAG
ACCGAGGGTCAATGGTCGCTTCGCCACAAAGGAAGAAGTTGAAGAATGCC
AACGTGGACAGCAGTAG
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protein sequence of Gchil5302.t1

>Gchil5302.t1 ID=Gchil5302.t1|Name=Gchil5302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=489bp
MAPTPPPAAASAHLHSAPPMSAPAAVPKSRPTPVPYPPHTPPMIDPSNLR
YMRMTPNLRDMVSGLSQPTPDPTAHISDILASPDPAPFYNSLTFASPILA
DLYPSPNPTSCSPLQTGPNSATHDASHRRMQRIAGARAQMNALFNSLSPT
NLDTEYGSDSNHDGVISLMSTPDLRHPTSQLPLSDATPFLRSKPRPDALH
AKSHSQPRESQSSSVTPPPDSSALSPTALSPTTSPEVTSKFHPAKLHNVV
TRPSVNASSSKQSPSKPLTLKPKPSSATQRDNIKHEPQTSKTPASSSTAL
SSALTAPTATHTLHPNPISINSVMPGLIPYAVPAHFSSQMLANAVSAQYS
GRPVAFVPGTSPNDFLQYNMLAHATAFHLGTAQAMQAAGRALQAGMSPTT
PPAKRSEPMSGSRKKRRRQMLDRSGCSVEQARENRARALKRLRHKKSMRT
QGTAVRYACRKRIAMVRPRVNGRFATKEEVEECQRGQQ*
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mRNA from alignment at tig00004418_pilon:881334..882800-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5302.t1 ID=Gchil5302.t1|Name=Gchil5302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00004418_pilon:881334..882800- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCACTCCGCCGCCCGCCGCCGCCTCAGCGCACTTGCACTCCGC
CCCCCCCATGTCAGCTCCCGCCGCCGTGCCCAAGTCGCGCCCGACCCCCG
TGCCCTACCCCCCTCACACCCCCCCCATGATAGACCCCTCAAATCTGCGC
TACATGCGCATGACCCCCAACCTCCGAGATATGGTCTCCGGTCTCTCACA
GCCCACCCCAGATCCCACGGCCCATATCAGCGACATTCTTGCGTCCCCCG
ACCCCGCCCCGTTTTACAACTCGCTTACCTTTGCCTCTCCTATTCTCGCA
GATCTCTACCCTTCTCCCAACCCCACTTCCTGCTCTCCGCTTCAAACCGG
CCCCAATTCCGCCACCCATGACGCCTCGCACCGCAGAATGCAGCGCATTG
CCGGCGCTCGTGCCCAGATGAATGCCCTTTTCAATTCGCTCAGCCCCACC
AACTTGGACACGGAATACGGCTCCGACAGCAACCACGACGGCGTCATCAG
CCTCATGTCCACCCCGGACCTGCGTCACCCCACTTCTCAGCTCCCCCTGT
CTGACGCCACCCCTTTCTTGCGATCCAAGCCTCGACCCGACGCACTGCAC
GCAAAGTCCCACTCGCAGCCGCGAGAGTCGCAAAGCTCTTCCGTCACACC
TCCTCCGGATTCCTCCGCGTTGTCACCTACTGCGTTGTCACCTACCACTT
CTCCAGAAGTTACGTCAAAGTTTCACCCCGCCAAACTGCACAACGTTGTC
ACCAGGCCTTCTGTCAACGCGTCGTCGTCGAAACAATCTCCTTCAAAGCC
GCTCACATTGAAACCCAAACCCTCCAGCGCCACCCAGCGGGACAACATCA
AGCACGAGCCGCAAACCTCCAAAACGCCCGCGTCGTCTTCCACCGCTCTG
TCCTCAGCGCTCACAGCTCCGACCGCAACACATACTCTCCATCCCAACCC
TATTTCTATCAACTCGGTCATGCCTGGACTCATCCCGTACGCTGTCCCTG
CGCACTTTTCTTCGCAGATGCTAGCAAACGCCGTCTCAGCGCAGTATTCA
GGCAGACCTGTCGCATTTGTACCCGGCACGTCTCCAAACGATTTTTTGCA
GTACAATATGTTGGCGCATGCTACCGCCTTTCACTTGGGAACTGCGCAAG
CAATGCAGGCAGCCGGCAGAGCGCTTCAGGCGGGAATGTCACCGACTACG
CCCCCTGCGAAACGGTCCGAGCCTATGAGCGGGAGCCGGAAGAAAAGAAG
GCGACAAATGCTGGACCGCAGCGGTTGTAGCGTGGAACAAGCCCGTGAGA
ACCGTGCCCGAGCTTTGAAAAGGCTCCGACACAAGAAGAGTATGAGAACT
CAGGGAACTGCTGTCCGATACGCTTGTCGCAAACGAATTGCTATGGTGAG
ACCGAGGGTCAATGGTCGCTTCGCCACAAAGGAAGAAGTTGAAGAATGCC
AACGTGGACAGCAGTAG
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Coding sequence (CDS) from alignment at tig00004418_pilon:881334..882800-

>Gchil5302.t1 ID=Gchil5302.t1|Name=Gchil5302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1467bp|location=Sequence derived from alignment at tig00004418_pilon:881334..882800- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCACTCCGCCGCCCGCCGCCGCCTCAGCGCACTTGCACTCCGC
CCCCCCCATGTCAGCTCCCGCCGCCGTGCCCAAGTCGCGCCCGACCCCCG
TGCCCTACCCCCCTCACACCCCCCCCATGATAGACCCCTCAAATCTGCGC
TACATGCGCATGACCCCCAACCTCCGAGATATGGTCTCCGGTCTCTCACA
GCCCACCCCAGATCCCACGGCCCATATCAGCGACATTCTTGCGTCCCCCG
ACCCCGCCCCGTTTTACAACTCGCTTACCTTTGCCTCTCCTATTCTCGCA
GATCTCTACCCTTCTCCCAACCCCACTTCCTGCTCTCCGCTTCAAACCGG
CCCCAATTCCGCCACCCATGACGCCTCGCACCGCAGAATGCAGCGCATTG
CCGGCGCTCGTGCCCAGATGAATGCCCTTTTCAATTCGCTCAGCCCCACC
AACTTGGACACGGAATACGGCTCCGACAGCAACCACGACGGCGTCATCAG
CCTCATGTCCACCCCGGACCTGCGTCACCCCACTTCTCAGCTCCCCCTGT
CTGACGCCACCCCTTTCTTGCGATCCAAGCCTCGACCCGACGCACTGCAC
GCAAAGTCCCACTCGCAGCCGCGAGAGTCGCAAAGCTCTTCCGTCACACC
TCCTCCGGATTCCTCCGCGTTGTCACCTACTGCGTTGTCACCTACCACTT
CTCCAGAAGTTACGTCAAAGTTTCACCCCGCCAAACTGCACAACGTTGTC
ACCAGGCCTTCTGTCAACGCGTCGTCGTCGAAACAATCTCCTTCAAAGCC
GCTCACATTGAAACCCAAACCCTCCAGCGCCACCCAGCGGGACAACATCA
AGCACGAGCCGCAAACCTCCAAAACGCCCGCGTCGTCTTCCACCGCTCTG
TCCTCAGCGCTCACAGCTCCGACCGCAACACATACTCTCCATCCCAACCC
TATTTCTATCAACTCGGTCATGCCTGGACTCATCCCGTACGCTGTCCCTG
CGCACTTTTCTTCGCAGATGCTAGCAAACGCCGTCTCAGCGCAGTATTCA
GGCAGACCTGTCGCATTTGTACCCGGCACGTCTCCAAACGATTTTTTGCA
GTACAATATGTTGGCGCATGCTACCGCCTTTCACTTGGGAACTGCGCAAG
CAATGCAGGCAGCCGGCAGAGCGCTTCAGGCGGGAATGTCACCGACTACG
CCCCCTGCGAAACGGTCCGAGCCTATGAGCGGGAGCCGGAAGAAAAGAAG
GCGACAAATGCTGGACCGCAGCGGTTGTAGCGTGGAACAAGCCCGTGAGA
ACCGTGCCCGAGCTTTGAAAAGGCTCCGACACAAGAAGAGTATGAGAACT
CAGGGAACTGCTGTCCGATACGCTTGTCGCAAACGAATTGCTATGGTGAG
ACCGAGGGTCAATGGTCGCTTCGCCACAAAGGAAGAAGTTGAAGAATGCC
AACGTGGACAGCAGTAG
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