Gchil4476.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4476.t1
Unique NameGchil4476.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length246
Homology
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A2V3INL6_9FLOR (Ribosome-recycling factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL6_9FLOR)

HSP 1 Score: 291 bits (746), Expect = 7.690e-97
Identity = 160/236 (67.80%), Postives = 188/236 (79.66%), Query Frame = 0
Query:   10 VSKMALCFAGLPLSPPARPNPIIHTFSRPPEFRLPLSNRSRIYTSQIRCELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            ++  A C   +P     R + + H  SRP   RL  S+RSRIYT  IR ELT+NETA KSEERM KT++S+Q+NFNTVRTGRA+PSILDRV+VSYYGA+TPLNQLASVS+SGTSTLV+EPYDK+++ +VE+AI+QSDVGITPNSDG+KIRL VPQLTEERRK+LAKQVK IAEE R+AIRNIRRDAVDALKK EKK+ LGKDESMTMQD++QK               KE DIMKV
Sbjct:    1 MNHTAFCVTSVPCGLGLRYDIVRHGISRPQSLRLSRSHRSRIYTPTIRSELTQNETAKKSEERMNKTIDSVQTNFNTVRTGRASPSILDRVLVSYYGADTPLNQLASVSVSGTSTLVVEPYDKNAIQDVEKAIMQSDVGITPNSDGSKIRLAVPQLTEERRKELAKQVKAIAEEGRIAIRNIRRDAVDALKKQEKKNNLGKDESMTMQDEVQKXXXXXXXXXXXXXXQKEADIMKV 236          
BLAST of Gchil4476.t1 vs. uniprot
Match: Q7XY97_GRIJA (Ribosome recycling factor n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY97_GRIJA)

HSP 1 Score: 263 bits (672), Expect = 1.090e-85
Identity = 131/188 (69.68%), Postives = 170/188 (90.43%), Query Frame = 0
Query:   58 CELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            CELT+N+TA KSE RM+KT++S++S FN+VRTGRA+PS+LDR+ V+YYGA+TPLN LA+VS+SGTSTLV+EPYDKS +S++ER++++SD+G+TPNSDG+ IRL++PQLT+ERR QL KQVK +AE+ RVAIRNIRRDAVD++KKLEKKSELGKDES T+QD +QKLTDKY+K ++ + K KE DIMKV
Sbjct:   43 CELTENDTAEKSEARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLVVEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDIMKV 230          
BLAST of Gchil4476.t1 vs. uniprot
Match: R7QEJ9_CHOCR (Ribosome-recycling factor RRF, Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEJ9_CHOCR)

HSP 1 Score: 261 bits (668), Expect = 7.530e-85
Identity = 132/192 (68.75%), Postives = 171/192 (89.06%), Query Frame = 0
Query:   54 SQIRCELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            S +RCELT+NET  ++ +RM KT++S+QS F+TVRTGRA+ S++DRVMVSYY  ETPLNQLASVS+SGTST+++EPYDKS + +VER I++SDVGITPN+DG+ IRL+VP LTE+RRK+L KQVKG+AEE RVA+RNIRRDAVD+LKKLEKK ELGKDES T+Q ++QK+TDK++K++D++LK KE DI+KV
Sbjct:   55 SSVRCELTQNETGKETTDRMGKTLDSVQSAFSTVRTGRASTSMVDRVMVSYYDVETPLNQLASVSLSGTSTILVEPYDKSCMGDVERGIMESDVGITPNNDGSCIRLSVPPLTEDRRKELVKQVKGLAEEGRVALRNIRRDAVDSLKKLEKKKELGKDESKTLQSEVQKITDKHVKRIDELLKQKEADILKV 246          
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A7S1TJD3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJD3_9RHOD)

HSP 1 Score: 223 bits (569), Expect = 2.800e-70
Identity = 114/196 (58.16%), Postives = 158/196 (80.61%), Query Frame = 0
Query:   50 RIYTSQIRCELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            R+  +  R  ++  + A  SEERMKK++E++ ++FNT+RTGRANP+ILDRVMVSYYGAETPL QLASVS   ++ + I+ +DKS + ++ERAI++SD+G+TP++DG  IRL +P LT++RRK++ KQ+K +AEE RVA+RNIRRD VD +K LEK S++GKDES   QD+IQKLTDKY+K VD +LK+KE ++MKV
Sbjct:   20 RVEPAAKRWRMSVKDIAKGSEERMKKSIEAVGTSFNTIRTGRANPAILDRVMVSYYGAETPLKQLASVSTPSSTVIAIDAFDKSCIKDIERAIMESDLGLTPSNDGNVIRLNIPALTQDRRKEMVKQLKQLAEEGRVALRNIRRDGVDQIKALEKSSDIGKDESKIAQDEIQKLTDKYVKTVDSLLKDKEGEVMKV 215          
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A7S0BL39_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL39_9RHOD)

HSP 1 Score: 214 bits (546), Expect = 1.110e-66
Identity = 109/190 (57.37%), Postives = 150/190 (78.95%), Query Frame = 0
Query:   56 IRCELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            +R  + ++E   ++E+RMKKT+E+++SNFNTVRTGRAN S+LDRV+V YY  +TPLNQLAS+SI  ++T+ I+PYDKS L+++ER+++++D+G+ PNSDG+ IRL VP LT+ERRK+  K VK IAE  RVA+RNIRRDA++  KK EK  ++ KDES T QD  QKLTDKY+K +D +   KE DI+KV
Sbjct:   34 VRVFMAQDERLKRAEDRMKKTVETVKSNFNTVRTGRANASMLDRVVVPYYEVDTPLNQLASISIPSSTTIQIDPYDKSVLADIERSLMEADLGMNPNSDGSVIRLIVPPLTQERRKEFVKSVKAIAEHGRVAVRNIRRDAIEKYKKAEKDGDMSKDESKTNQDGAQKLTDKYVKMIDTLASEKEKDILKV 223          
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A7S4EEJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.410e-64
Identity = 102/175 (58.29%), Postives = 142/175 (81.14%), Query Frame = 0
Query:   71 ERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            +RM+K++ES+  N NT+RTGRA+P+ILDRV   YYG ETP+NQ+AS+S+     L +EP+DKS L +VERAI++SDVG+TP +DGT IRL +P LTE+RRK++ KQ K I EE +VA+RNIRR AVD++KKLEK S++ +DES + QDDIQK+TD+ +K++D +++ KE D+MKV
Sbjct:   54 DRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228          
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A1X6P8G4_PORUM (RRF domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8G4_PORUM)

HSP 1 Score: 210 bits (534), Expect = 2.690e-64
Identity = 104/174 (59.77%), Postives = 141/174 (81.03%), Query Frame = 0
Query:   72 RMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            RM+KT+E++++NFNT+RTGRA PSILDR+MV YYGAETPL  LAS+S + ++TL I+ +DK  + ++ERA+++SD+G+ PNSDG  IRLTVPQLT+ERRK+L+KQ K +AE+ R+A RN+RRD +D +KK EK S+LGKD S  +QD I KLTDKY+  +D+  + KE DIMKV
Sbjct:   92 RMEKTLEAVRTNFNTIRTGRATPSILDRIMVDYYGAETPLQSLASISATSSTTLTIDAFDKGCVKDIERALMESDLGMMPNSDGVVIRLTVPQLTKERRKELSKQAKSLAEDGRIACRNVRRDVIDKVKKQEKASDLGKDMSKDLQDKISKLTDKYVGMIDKAFEEKEKDIMKV 265          
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A7S2S100_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S100_9STRA)

HSP 1 Score: 209 bits (531), Expect = 3.520e-64
Identity = 106/187 (56.68%), Postives = 147/187 (78.61%), Query Frame = 0
Query:   61 TKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQ--DDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            T +E  +++E +MKK++ES+Q+N NT+RTGRANPS+LDRV V YYG  TPLNQ+AS+S+S  ++L+++PYDKSSL +VE+AI++SD+GI P++DG KIRL +P LTEERRK+L K  K + E+ +VA+RN+RRDAVD++KKL K  + G  E       D IQKLTDKY+K+VD+++  KE DI KV
Sbjct:   54 TLDEVESEAEVKMKKSVESVQTNLNTLRTGRANPSLLDRVQVDYYGTPTPLNQVASISVSSGTSLIVDPYDKSSLGDVEKAIMESDIGIVPSNDGEKIRLNIPSLTEERRKELMKTAKSLGEDGKVALRNVRRDAVDSIKKLAKDKDAGVSEDSVKDSTDSIQKLTDKYVKEVDEVVAGKEKDISKV 240          
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A7S2JZ54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ54_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.990e-64
Identity = 103/183 (56.28%), Postives = 144/183 (78.69%), Query Frame = 0
Query:   63 NETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            +E A + EERM+K+ +S+  N  T+ TGRANP++LDR+   YYGA TP+NQ+AS+S+   S L I+PYDKSSLS++E+AI+ SD+G+TP +DG+ IR+ +P LTEERRK+L K+ KGI EE +VA+RN+RRD VD +KKLEK S +G+D+S   QDDIQK+TDKY+K +D+++  KE D+ KV
Sbjct:   47 DEIALEIEERMQKSCDSVVRNLQTISTGRANPAMLDRIQADYYGAPTPINQMASISVPSASQLQIDPYDKSSLSDIEKAIIISDLGMTPQNDGSVIRINIPALTEERRKELLKKCKGIGEEGKVAVRNVRRDGVDKIKKLEKASTIGEDQSKEGQDDIQKMTDKYVKDIDEIVAKKEKDVSKV 229          
BLAST of Gchil4476.t1 vs. uniprot
Match: A0A7S2GIE0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIE0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 5.030e-63
Identity = 101/177 (57.06%), Postives = 144/177 (81.36%), Query Frame = 0
Query:   69 SEERMKKTMESLQSNFNTVRTGRANPSILDRVMVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGITPNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALKKLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV 245
            SEERMKK++ES+  N NT+RTGRA PS+LDR+ V YYG ETPLNQLA VS+S  ++LV++PYDKS+L+E+E+A+++SD+GI P ++G  IRL++P +TE+RRK+L K  K ++E+ +VAIRNIRRDA+D +KKL+K  ++ +D +   Q+ IQ LTDKY+KQV+  +K+KET+IM V
Sbjct:   60 SEERMKKSIESVNQNLNTLRTGRATPSLLDRINVDYYGCETPLNQLAGVSVSSGTSLVVDPYDKSALAEIEKALMESDIGIMPQNNGDVIRLSIPAVTEDRRKELLKTAKSLSEDGKVAIRNIRRDALDQVKKLQKADDISEDNAKDAQESIQSLTDKYVKQVESTMKDKETEIMTV 236          
The following BLAST results are available for this feature:
BLAST of Gchil4476.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INL6_9FLOR7.690e-9767.80Ribosome-recycling factor n=1 Tax=Gracilariopsis c... [more]
Q7XY97_GRIJA1.090e-8569.68Ribosome recycling factor n=1 Tax=Griffithsia japo... [more]
R7QEJ9_CHOCR7.530e-8568.75Ribosome-recycling factor RRF, Rhodoplastic n=1 Ta... [more]
A0A7S1TJD3_9RHOD2.800e-7058.16Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S0BL39_9RHOD1.110e-6657.37Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S4EEJ6_9STRA2.410e-6458.29Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1X6P8G4_PORUM2.690e-6459.77RRF domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S2S100_9STRA3.520e-6456.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2JZ54_9STRA4.990e-6456.28Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2GIE0_9STRA5.030e-6357.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availableGENE3D3.30.1360.40coord: 91..165
e-value: 2.3E-69
score: 234.3
NoneNo IPR availablePANTHERPTHR20982:SF3MITOCHONDRIAL RIBOSOME RECYCLING FACTORcoord: 63..244
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..245
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..28
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 70..242
e-value: 2.3E-69
score: 234.3
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 64..245
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 80..243
e-value: 3.5E-62
score: 209.1
IPR002661Ribosome recycling factorTIGRFAMTIGR00496TIGR00496coord: 70..245
e-value: 1.7E-72
score: 240.7
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 63..244
IPR002661Ribosome recycling factorHAMAPMF_00040RRFcoord: 63..245
score: 27.171144
IPR002661Ribosome recycling factorCDDcd00520RRFcoord: 67..243
e-value: 2.70501E-79
score: 234.462

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:474657..475394 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4476.t1Gchil4476.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004426_pilon 474657..475394 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4476.t1 ID=Gchil4476.t1|Name=Gchil4476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MDSEFAGISVSKMALCFAGLPLSPPARPNPIIHTFSRPPEFRLPLSNRSR
IYTSQIRCELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRV
MVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGIT
PNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALK
KLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036191RRF_sf
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac