Gchil4476.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4476.t1
Unique NameGchil4476.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004426_piloncontigtig00004426_pilon:474657..475394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704191.1
Preferred nameRRF1
PFAMsRRF
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K02838,ko:K03283,ko:K13811
KEGG TC1.A.33.1
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00176,M00353,M00355
GOsGO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Evalue1.17e-61
EggNOG OGsCOG0233@1|root,KOG4759@2759|Eukaryota
EC2.7.1.25,2.7.7.4
Descriptionribosomal large subunit binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4476Gchil4476Gracilaria chilensis NLEC103_M9 malegenetig00004426_pilon 474657..475394 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4476.t1.stop1Gchil4476.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004426_pilon 474657..474659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4476.t1.CDS1Gchil4476.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004426_pilon 474657..475394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4476.t1.exon1Gchil4476.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004426_pilon 474657..475394 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4476.t1.start1Gchil4476.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004426_pilon 475392..475394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4476.t1Gchil4476.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004426_pilon 474657..475394 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4476.t1 ID=Gchil4476.t1|Name=Gchil4476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp
MDSEFAGISVSKMALCFAGLPLSPPARPNPIIHTFSRPPEFRLPLSNRSR
IYTSQIRCELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRV
MVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGIT
PNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALK
KLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV*
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spliced messenger RNA

>Gchil4476.t1 ID=Gchil4476.t1|Name=Gchil4476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004426_pilon:474657..475394- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCAGAGTTTGCTGGTATCTCAGTTTCAAAAATGGCTCTTTGCTT
CGCCGGTCTTCCCCTTTCCCCTCCCGCGCGCCCTAATCCTATCATTCATA
CATTTTCCCGTCCACCGGAATTTCGACTCCCGCTCTCAAATCGCTCAAGG
ATTTACACTTCCCAAATTCGATGCGAGCTGACCAAGAATGAAACCGCTAC
AAAGTCAGAGGAACGCATGAAAAAGACCATGGAATCTCTTCAGTCTAACT
TTAATACTGTTCGAACAGGTCGCGCAAACCCATCCATTTTAGACCGTGTT
ATGGTTTCCTACTACGGAGCGGAAACCCCACTTAACCAGCTGGCAAGCGT
TTCCATAAGTGGGACATCCACACTGGTAATCGAGCCTTACGACAAAAGTT
CTCTCTCAGAAGTTGAACGAGCGATTCTTCAGAGTGATGTCGGAATCACT
CCGAACAGTGATGGTACAAAAATTAGGCTAACCGTTCCCCAACTTACCGA
GGAAAGGCGAAAGCAACTGGCGAAACAGGTAAAGGGAATTGCAGAGGAAG
CACGAGTCGCGATCCGCAATATTAGAAGAGATGCCGTTGATGCCTTGAAG
AAGTTAGAGAAGAAAAGCGAGCTTGGGAAAGATGAAAGCATGACGATGCA
GGATGACATTCAGAAGTTGACTGACAAGTACATCAAGCAGGTAGATCAAA
TGCTCAAGAACAAGGAGACTGATATTATGAAAGTCTGA
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protein sequence of Gchil4476.t1

>Gchil4476.t1 ID=Gchil4476.t1|Name=Gchil4476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MDSEFAGISVSKMALCFAGLPLSPPARPNPIIHTFSRPPEFRLPLSNRSR
IYTSQIRCELTKNETATKSEERMKKTMESLQSNFNTVRTGRANPSILDRV
MVSYYGAETPLNQLASVSISGTSTLVIEPYDKSSLSEVERAILQSDVGIT
PNSDGTKIRLTVPQLTEERRKQLAKQVKGIAEEARVAIRNIRRDAVDALK
KLEKKSELGKDESMTMQDDIQKLTDKYIKQVDQMLKNKETDIMKV*
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mRNA from alignment at tig00004426_pilon:474657..475394-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4476.t1 ID=Gchil4476.t1|Name=Gchil4476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004426_pilon:474657..475394- (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCAGAGTTTGCTGGTATCTCAGTTTCAAAAATGGCTCTTTGCTT
CGCCGGTCTTCCCCTTTCCCCTCCCGCGCGCCCTAATCCTATCATTCATA
CATTTTCCCGTCCACCGGAATTTCGACTCCCGCTCTCAAATCGCTCAAGG
ATTTACACTTCCCAAATTCGATGCGAGCTGACCAAGAATGAAACCGCTAC
AAAGTCAGAGGAACGCATGAAAAAGACCATGGAATCTCTTCAGTCTAACT
TTAATACTGTTCGAACAGGTCGCGCAAACCCATCCATTTTAGACCGTGTT
ATGGTTTCCTACTACGGAGCGGAAACCCCACTTAACCAGCTGGCAAGCGT
TTCCATAAGTGGGACATCCACACTGGTAATCGAGCCTTACGACAAAAGTT
CTCTCTCAGAAGTTGAACGAGCGATTCTTCAGAGTGATGTCGGAATCACT
CCGAACAGTGATGGTACAAAAATTAGGCTAACCGTTCCCCAACTTACCGA
GGAAAGGCGAAAGCAACTGGCGAAACAGGTAAAGGGAATTGCAGAGGAAG
CACGAGTCGCGATCCGCAATATTAGAAGAGATGCCGTTGATGCCTTGAAG
AAGTTAGAGAAGAAAAGCGAGCTTGGGAAAGATGAAAGCATGACGATGCA
GGATGACATTCAGAAGTTGACTGACAAGTACATCAAGCAGGTAGATCAAA
TGCTCAAGAACAAGGAGACTGATATTATGAAAGTCTGA
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Coding sequence (CDS) from alignment at tig00004426_pilon:474657..475394-

>Gchil4476.t1 ID=Gchil4476.t1|Name=Gchil4476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00004426_pilon:474657..475394- (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCAGAGTTTGCTGGTATCTCAGTTTCAAAAATGGCTCTTTGCTT
CGCCGGTCTTCCCCTTTCCCCTCCCGCGCGCCCTAATCCTATCATTCATA
CATTTTCCCGTCCACCGGAATTTCGACTCCCGCTCTCAAATCGCTCAAGG
ATTTACACTTCCCAAATTCGATGCGAGCTGACCAAGAATGAAACCGCTAC
AAAGTCAGAGGAACGCATGAAAAAGACCATGGAATCTCTTCAGTCTAACT
TTAATACTGTTCGAACAGGTCGCGCAAACCCATCCATTTTAGACCGTGTT
ATGGTTTCCTACTACGGAGCGGAAACCCCACTTAACCAGCTGGCAAGCGT
TTCCATAAGTGGGACATCCACACTGGTAATCGAGCCTTACGACAAAAGTT
CTCTCTCAGAAGTTGAACGAGCGATTCTTCAGAGTGATGTCGGAATCACT
CCGAACAGTGATGGTACAAAAATTAGGCTAACCGTTCCCCAACTTACCGA
GGAAAGGCGAAAGCAACTGGCGAAACAGGTAAAGGGAATTGCAGAGGAAG
CACGAGTCGCGATCCGCAATATTAGAAGAGATGCCGTTGATGCCTTGAAG
AAGTTAGAGAAGAAAAGCGAGCTTGGGAAAGATGAAAGCATGACGATGCA
GGATGACATTCAGAAGTTGACTGACAAGTACATCAAGCAGGTAGATCAAA
TGCTCAAGAACAAGGAGACTGATATTATGAAAGTCTGA
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