Gchil4427.t2 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil4427.t2
Unique Name	Gchil4427.t2
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	262

Homology

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BLAST of Gchil4427.t2 vs. uniprot
Match: A0A2V3IUG9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG9_9FLOR)

HSP 1 Score: 206 bits (525), Expect = 4.950e-63
Identity = 124/265 (46.79%), Postives = 166/265 (62.64%), Query Frame = 0

Query:    1 MEVVIAASIIAQVSVIAIDKFTARYDAVTRLRETNHEANRHQDESEPQRWTRPQ-TQAASISERQVEMTEQNLHVDPQVEAIPDEHSIEFLEHRLMDLRNQARQLNAPDTLVQYARVTREANKVEKALNEKKGES--EKAPSAKIPLETAPFIGALSELIKPGV-GVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGIAMTVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALILCNMFISALLHA 261
            MEVVIA S+IA   V+A+D++ A+ +A + + +  H  +  Q  S  Q    PQ  ++A+ +E  V                P+E SIEFLE RL +LRNQA++LNAPDTLVQYARVTREANKVEK +NEKK      + PSA +   +  F    + ++ PG   VVR  + S M+R +PR++ F FLWYYFSWR  +  QG  MT+DC ALRP+S+LFRK    C E++W+C   A+Q PQC ISYSWAL+ CNM I+ +  A
Sbjct:    1 MEVVIATSLIAHFGVLAVDRYIAKLEA-SAVGDVPHATDEQQTISSSQ----PQGNESATKNESAV--------------TKPEEGSIEFLEMRLKELRNQAKRLNAPDTLVQYARVTREANKVEKDVNEKKAAEGITEEPSANVDALSRAF----TSMVTPGATSVVRRRINSQMLRTVPRVLGFAFLWYYFSWRSGALRQGNVMTIDCEALRPLSWLFRKQWRMCSEEEWVC---AAQRPQCAISYSWALVFCNMVIATIFKA 239

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BLAST of Gchil4427.t2 vs. uniprot
Match: R7Q5M8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5M8_CHOCR)

HSP 1 Score: 123 bits (309), Expect = 1.240e-30
Identity = 82/202 (40.59%), Postives = 113/202 (55.94%), Query Frame = 0

Query:   55 TQAASISERQVEMTEQNLHVDPQ---VEAIPDEHSIEFLEHRLMDLRNQARQLNAPDTLVQYARVTREANKVEKALNEKKGESEKAPSAKIPLETAPFIGALSELIKPGV-GVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGIAMTVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALILCN 252
            TQ AS S+ +VE    +   +PQ    E  P E SI  LE ++  LR +A+++NAPDT VQYAR+TREANKVEK L EKK      PS          +  LS+ + P     ++      +++ I R + FL LW+YFS          A+ +DCRA RP+SF+F K  P+C +D W+C   A+Q PQC +SY   L+L N
Sbjct:   40 TQRASNSKDRVEAAPAS-DANPQEADAEQFP-EGSIPALEKKVKHLRAEAKRVNAPDTFVQYARLTREANKVEKELTEKKALE---PSDTHGTVLPDVMAMLSKAVTPQAQSSMKRRAQFMVLKAIVRALPFLLLWWYFSPFGYDRGPADALVIDCRAFRPLSFIFSKREPSCGDDHWMC---AAQPPQCAVSYWMVLVLAN 233

The following BLAST results are available for this feature:

BLAST of Gchil4427.t2 vs. uniprot

BLAST of Gchil4427.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IUG9_9FLOR	4.950e-63	46.79	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7Q5M8_CHOCR	1.240e-30	40.59	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..57
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 241..259
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 260..261
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..240
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..17

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004426_pilon	contig	tig00004426_pilon:263199..264104 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4427.t2	Gchil4427.t2	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004426_pilon 263199..264104 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil4427.t2 ID=Gchil4427.t2|Name=Gchil4427.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MEVVIAASIIAQVSVIAIDKFTARYDAVTRLRETNHEANRHQDESEPQRW
TRPQTQAASISERQVEMTEQNLHVDPQVEAIPDEHSIEFLEHRLMDLRNQ
ARQLNAPDTLVQYARVTREANKVEKALNEKKGESEKAPSAKIPLETAPFI
GALSELIKPGVGVVRHGVTSNMVRNIPRIVAFLFLWYYFSWRPDSANQGI
AMTVDCRALRPISFLFRKLSPACLEDDWICVAQASQTPQCVISYSWALIL
CNMFISALLHA*