Gchil4367.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4367.t1
Unique NameGchil4367.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length639
Homology
BLAST of Gchil4367.t1 vs. uniprot
Match: A0A2V3J4N2_9FLOR (Homeobox protein HD-5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4N2_9FLOR)

HSP 1 Score: 422 bits (1086), Expect = 5.950e-136
Identity = 251/531 (47.27%), Postives = 320/531 (60.26%), Query Frame = 0
Query:  118 SLPDMASDLQHDLQTVAHHALHVKPQPXXXXXXXXPPPTPAQLESQPTHVTETQLDEPPAQSAIEFSSATL----HAQQAIVEAEQQQTQSIHTSHEIPSQEMIPSQSEPQLVQTDVTSATDSDMHHAEAVVHELQKSESQLDAHNVLSEEHASQLAHSSAFPTAAVAV---SAPATITDFAVNKVVDDEHTRVANEFDPKGPQAP-HQAISIAPRRVTEQSKRGSERYHASGEQLKTLVSAFEHNPTPDASTLTYLSEAIGMPMHNLVLWFKNRRARHKRSHINQMARGGKRSYVKSGIYSRHKRVKHSHRQPAPATVPPGGLTLPLSHGLTSISSPLAVSSIALPTVDPKIPAIAVAG--RDAEELVKTGAPQPSRMKRPRFSAVPELVGDDNPCQGWTSEECHRRCLAFFERTTSITCPEQSKLVENVSSEFFLSELQSGLTLVSAMQPLETSVGVLDAIMEKLPAQGPRLSSGSKVLMREFLARIRTGSAEQFVLIEGATDAAETMAESHGSVVQDVVPNASSAGEQ 638
            +L D+A  LQHDLQ VA  A+ VK QP              Q   Q       QL E P+Q  ++++        H QQ ++     Q Q  H +               Q+V T  T      + H   V H + K E QL+  + L+   ++Q+                SA   + D  +NKV D +H R A E+  K  Q P H    +  RR  ++SKRGSERYHASGEQLKTL++AFE +PTP A TL YLS +I MPMHNLVLWFKNRRARHKR+H NQ +RGGKRSYVKSGIYSR+KR K S   PAP+ +  G LTLPLSHGL++++     +S    T   +   I +A   RD E+L+KTGAP PS+MKRPRF  + EL+G++NPC  WT+EECHRRC+AFF+RTT+   PEQSKLVE VSS FFLSELQSG TL S MQPLET+V VLD I+++LP+ GPRLSSGS+V+MREFLA++RTG+A   +L E   +A ET+ +   +    V P    A EQ
Sbjct:  193 TLQDIAGGLQHDLQAVAQQAVAVKTQP--------------QQSIQ-------QLAEQPSQQPMDYAEPAATEPDHTQQTLIHDADPQNQPAHAAQ--------------QIVHTVATVMPQ--LSHTPDV-HGVHKPEPQLETESALATAQSAQIIXXXXXXXXXXXXXXXSASTAVQDLVINKVPDGDHVRAAAEYSTKPQQQPLHHTAPVHSRRAADRSKRGSERYHASGEQLKTLIAAFEQDPTPSAGTLNYLSASIAMPMHNLVLWFKNRRARHKRTHANQSSRGGKRSYVKSGIYSRNKRTKQSQHHPAPSNMHTGALTLPLSHGLSTLAPATVPASSTGMTQGGETKGITIADAKRDFEDLIKTGAPHPSQMKRPRFVGIAELLGEENPCHSWTAEECHRRCVAFFDRTTNNVFPEQSKLVEEVSSVFFLSELQSGFTLTSTMQPLETTVAVLDGIVDRLPSDGPRLSSGSRVIMREFLAQVRTGNAMHLLLAEATPEAGETVPDGEDTEAAAVPPAEPPATEQ 685          
BLAST of Gchil4367.t1 vs. uniprot
Match: R7QDC2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDC2_CHOCR)

HSP 1 Score: 168 bits (426), Expect = 2.790e-42
Identity = 110/275 (40.00%), Postives = 154/275 (56.00%), Query Frame = 0
Query:  372 MPMHNLVLWFKNRRARHKRSHINQMA-RGGKRSYVKSGIYSRHKRVKHSHRQPAPAT--VPPGGLTLPLSHGLTSISSPLAVSSIALPTVDPKI------------------PAIAVAGRDAEELVKTGAPQP---------------SRM------KRPRFSAVPELVGDDNPCQGWTSEECHRRCLAFFERTTS-ITCPEQSKLVENVSSEFFLSELQSGLTLVSAMQPLETSVGVLDAIMEKLPAQGP--RLSSGSKVLMREFLARIRTGSA 601
            MPMHN+VLWFKNRRARHK+ H +Q A + G+RSYVKSGIY+R  +     R    ++  +    +T    H      +   V+ +  P++  ++                  P   +AG  AE L+ + A                  SR+      KR R+  V E+VGD NPC+ W ++ECHRRC AFF ++TS    PEQ+K  +  S  FFL ELQ+GLTL SAMQ LETS GVLD IM+++  +G   +LSSGS+ ++REF+A++R+G A
Sbjct:    1 MPMHNMVLWFKNRRARHKKHHPSQTAVKTGRRSYVKSGIYARASKKGKVLRDGTGSSPMMAAAAVTSEDHHAEVRGDTTREVADVGRPSIASQVETDMHQVALLAAAVEAGAPLADIAGAPAEGLMDSVAKNEVLDGIGSEKRRLEDGSRVDGMPPTKRTRYQGVSEVVGDANPCRVWNAKECHRRCCAFFAKSTSGCEQPEQTKSAQRASEMFFLGELQNGLTLTSAMQSLETSAGVLDKIMDRIRQEGQSVKLSSGSRAVLREFVAQVRSGQA 275          
BLAST of Gchil4367.t1 vs. uniprot
Match: A0A7S1XCF6_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XCF6_9RHOD)

HSP 1 Score: 88.6 bits (218), Expect = 1.800e-15
Identity = 82/306 (26.80%), Postives = 134/306 (43.79%), Query Frame = 0
Query:  332 KRGSERYHASGEQLKTLVSAFEHNPTPDASTLTYLSEAIGMPMHNLVLWFKNRRARHKRSHINQMARGGKRSYVKSGIYSRHKRVK-HSHRQPAPATVPPGGLTLPLSHGLTSISSPLAVSSIALPTVDPKI------------PAIAVAGRDAEEL---------VKTGAPQPSRMKRPRFSAVPELVGDDN-----------PCQGWTSEECHRRCLAFFERTTSITCPEQSKLVENVSSEFFLSELQSGLTLVSAMQPLETSVGVLDAIMEKLPAQGPRLSSGSKVLMREFLARIRTGSAEQF 604
            ++G  R+H +  Q+K +   FEH+  P    L  ++    +P+  LV+WFKNRRAR K    +   +GG++    +   +   R    +  +P+   V   G  +   H        +  S   + T  P++              + V G+ +EEL         ++     P   +  R   V E +   N           PC  W  +      LAF  R   +   +  +L+E V + FFL ELQSG T+ S MQPLE S+ VL+ IM  + +    L SG++ +MREFL ++R+G   ++
Sbjct:   22 QQGFRRFHPNPCQVKKMTEMFEHSRCPSTEELRGMAAEWDVPLVQLVVWFKNRRARFK---PHTEGKGGEKEGATTSRKAMMTRTTMEAINKPSDILVRTAGTVV---HKRKRSDGRVRGSDGEVRTRQPRMMVDDERSTQERREGMRVVGKGSEELRLCDEGRVGLRLDGRTPVPEEEERVEEVDEELPMGNEMIRVGKRSSHPCSEWDPDVSFEHALAFV-REWGLKDGKHMQLMEQVCNRFFLDELQSGFTISSKMQPLEDSLRVLNEIM--VDSSFDALPSGARTIMREFLCQLRSGKVTEW 318          
The following BLAST results are available for this feature:
BLAST of Gchil4367.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J4N2_9FLOR5.950e-13647.27Homeobox protein HD-5 n=1 Tax=Gracilariopsis chord... [more]
R7QDC2_CHOCR2.790e-4240.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1XCF6_9RHOD1.800e-1526.80Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 333..395
e-value: 3.9E-11
score: 53.0
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 337..390
e-value: 3.3E-11
score: 42.9
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 331..391
score: 13.296764
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 337..392
e-value: 1.01626E-11
score: 58.4089
NoneNo IPR availableGENE3D1.10.10.60coord: 328..393
e-value: 1.6E-13
score: 52.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..171
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 334..397

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2357782..2359698 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4367.t1Gchil4367.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 2357782..2359698 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4367.t1 ID=Gchil4367.t1|Name=Gchil4367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=639bp
MDDQPVALHDAQSPLAVTPSPTSFKQQPPPSSSSPQSLASPHSARLPAPA
RLQASALEPHQQAASGADDAIADRAPRGAASGVSDDHHAAVDEQHSRSDR
VLNIAVASSQMTHASQPSLPDMASDLQHDLQTVAHHALHVKPQPLPHPLS
HPPPPTPAQLESQPTHVTETQLDEPPAQSAIEFSSATLHAQQAIVEAEQQ
QTQSIHTSHEIPSQEMIPSQSEPQLVQTDVTSATDSDMHHAEAVVHELQK
SESQLDAHNVLSEEHASQLAHSSAFPTAAVAVSAPATITDFAVNKVVDDE
HTRVANEFDPKGPQAPHQAISIAPRRVTEQSKRGSERYHASGEQLKTLVS
AFEHNPTPDASTLTYLSEAIGMPMHNLVLWFKNRRARHKRSHINQMARGG
KRSYVKSGIYSRHKRVKHSHRQPAPATVPPGGLTLPLSHGLTSISSPLAV
SSIALPTVDPKIPAIAVAGRDAEELVKTGAPQPSRMKRPRFSAVPELVGD
DNPCQGWTSEECHRRCLAFFERTTSITCPEQSKLVENVSSEFFLSELQSG
LTLVSAMQPLETSVGVLDAIMEKLPAQGPRLSSGSKVLMREFLARIRTGS
AEQFVLIEGATDAAETMAESHGSVVQDVVPNASSAGEQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf