Gchil4367.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil4367.t1
Unique Name	Gchil4367.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	639

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004373_pilon	contig	tig00004373_pilon:2357782..2359698 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45285.XP_003645682.1
Preferred name	PHO2
PFAMs	Homeobox
Max annot lvl	4751\|Fungi
KEGG ko	ko:K02646
KEGG Pathway	ko04111,map04111
GOs	GO:0000105,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006144,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009112,GO:0009113,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016053,GO:0016070,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019752,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042440,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043388,GO:0043436,GO:0043565,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046112,GO:0046148,GO:0046394,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051276,GO:0052803,GO:0055086,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2000677,GO:2000679,GO:2001141
Evalue	5.29e-05
EggNOG OGs	KOG0486@1\|root,KOG0486@2759\|Eukaryota,3A7ZY@33154\|Opisthokonta,3Q3MA@4751\|Fungi,3RKNZ@4890\|Ascomycota,3RRXC@4891\|Saccharomycetes,3RZIP@4893\|Saccharomycetaceae
Description	to Saccharomyces cerevisiae PHO2 (YDL106C)
COG category	K
BRITE	ko00000,ko00001,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil4367	Gchil4367	Gracilaria chilensis NLEC103_M9 male	gene	tig00004373_pilon 2357782..2359698 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4367.t1.stop1	Gchil4367.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004373_pilon 2357782..2357784 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4367.t1.CDS1	Gchil4367.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004373_pilon 2357782..2359698 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4367.t1.exon1	Gchil4367.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004373_pilon 2357782..2359698 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4367.t1.start1	Gchil4367.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004373_pilon 2359696..2359698 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil4367.t1	Gchil4367.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004373_pilon 2357782..2359698 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004373_pilon:2357782..2359698-
coding sequence from alignment at tig00004373_pilon:2357782..2359698-

mRNA sequence

>Gchil4367.t1 ID=Gchil4367.t1|Name=Gchil4367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=639bp
MDDQPVALHDAQSPLAVTPSPTSFKQQPPPSSSSPQSLASPHSARLPAPA
RLQASALEPHQQAASGADDAIADRAPRGAASGVSDDHHAAVDEQHSRSDR
VLNIAVASSQMTHASQPSLPDMASDLQHDLQTVAHHALHVKPQPLPHPLS
HPPPPTPAQLESQPTHVTETQLDEPPAQSAIEFSSATLHAQQAIVEAEQQ
QTQSIHTSHEIPSQEMIPSQSEPQLVQTDVTSATDSDMHHAEAVVHELQK
SESQLDAHNVLSEEHASQLAHSSAFPTAAVAVSAPATITDFAVNKVVDDE
HTRVANEFDPKGPQAPHQAISIAPRRVTEQSKRGSERYHASGEQLKTLVS
AFEHNPTPDASTLTYLSEAIGMPMHNLVLWFKNRRARHKRSHINQMARGG
KRSYVKSGIYSRHKRVKHSHRQPAPATVPPGGLTLPLSHGLTSISSPLAV
SSIALPTVDPKIPAIAVAGRDAEELVKTGAPQPSRMKRPRFSAVPELVGD
DNPCQGWTSEECHRRCLAFFERTTSITCPEQSKLVENVSSEFFLSELQSG
LTLVSAMQPLETSVGVLDAIMEKLPAQGPRLSSGSKVLMREFLARIRTGS
AEQFVLIEGATDAAETMAESHGSVVQDVVPNASSAGEQ*

spliced messenger RNA

>Gchil4367.t1 ID=Gchil4367.t1|Name=Gchil4367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00004373_pilon:2357782..2359698- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACCAGCCCGTCGCACTTCACGACGCGCAGTCTCCACTCGCAGT
CACACCCTCACCAACATCGTTTAAACAGCAACCGCCGCCTTCTTCGTCAT
CGCCTCAGTCGCTTGCCTCGCCGCACAGCGCGCGTCTCCCCGCTCCCGCT
CGTCTTCAAGCGTCTGCACTTGAGCCTCACCAACAAGCGGCTTCCGGCGC
TGATGATGCCATTGCTGACCGTGCTCCGCGTGGGGCTGCCAGCGGAGTGA
GTGACGATCACCATGCTGCTGTCGACGAACAGCACTCGCGCTCGGACCGC
GTACTCAACATCGCGGTGGCGTCTTCTCAGATGACTCATGCGTCCCAACC
GTCTCTTCCGGACATGGCTTCGGATTTGCAACATGATTTACAAACCGTTG
CACATCACGCCTTGCATGTAAAGCCACAGCCACTACCGCACCCATTGTCA
CATCCACCACCACCAACGCCCGCGCAACTCGAGTCGCAACCCACGCATGT
GACTGAGACACAGTTGGATGAGCCACCGGCGCAGAGTGCGATTGAGTTCA
GCTCAGCCACTCTGCATGCTCAACAGGCCATAGTGGAAGCCGAGCAACAA
CAAACCCAGTCAATCCATACATCACACGAGATTCCGTCACAGGAAATGAT
ACCGTCGCAATCGGAGCCTCAGCTGGTGCAGACAGATGTGACAAGCGCTA
CCGACTCTGATATGCACCACGCCGAGGCGGTTGTGCATGAATTACAAAAG
TCCGAGTCACAACTGGATGCCCACAACGTCCTCTCTGAAGAGCATGCTTC
TCAACTTGCTCATTCCAGTGCGTTTCCTACAGCAGCCGTAGCCGTATCGG
CTCCAGCTACCATTACTGATTTTGCAGTCAACAAGGTTGTAGATGATGAG
CATACACGGGTGGCCAATGAGTTCGACCCAAAGGGCCCTCAGGCTCCACA
CCAAGCTATATCTATCGCACCGCGCCGCGTCACAGAGCAATCGAAACGGG
GTTCGGAACGCTACCACGCATCAGGTGAGCAGCTCAAGACCCTAGTTTCC
GCATTTGAACACAATCCAACTCCAGATGCATCTACTTTAACTTATCTCTC
GGAAGCTATCGGCATGCCGATGCATAACCTCGTGCTATGGTTTAAGAATC
GTCGCGCACGCCACAAACGCTCTCATATCAATCAGATGGCCAGGGGCGGA
AAGCGGAGCTATGTCAAGAGCGGAATATATTCGAGGCACAAGAGAGTCAA
GCATAGTCATCGGCAACCTGCCCCAGCCACCGTGCCACCTGGCGGACTTA
CCCTTCCCCTGTCGCATGGTCTTACCTCGATTTCATCCCCCCTCGCCGTT
TCGTCTATTGCCCTACCGACTGTCGACCCAAAGATCCCTGCAATTGCTGT
TGCGGGGCGTGACGCTGAAGAGCTCGTCAAGACGGGCGCACCACAACCAT
CTCGTATGAAGAGACCCCGCTTCTCGGCCGTTCCTGAATTGGTTGGTGAT
GATAATCCCTGTCAAGGTTGGACATCAGAGGAATGTCATCGGAGATGCCT
CGCCTTTTTCGAGAGGACAACCTCCATTACTTGTCCGGAGCAGTCCAAAC
TTGTCGAGAACGTTAGCTCAGAGTTTTTTTTGTCGGAGTTACAAAGTGGG
TTGACTTTGGTCAGCGCAATGCAACCGTTGGAAACTAGCGTTGGAGTGCT
GGACGCAATAATGGAAAAGCTTCCTGCACAAGGGCCGCGTCTCAGCTCCG
GTTCCAAGGTTCTCATGCGTGAATTTCTCGCTCGAATTAGAACAGGAAGT
GCGGAGCAATTTGTTCTTATCGAAGGAGCTACGGATGCTGCAGAGACTAT
GGCGGAGAGCCACGGGAGCGTGGTTCAAGATGTTGTGCCCAACGCCTCGT
CGGCGGGGGAACAATGA

protein sequence of Gchil4367.t1

>Gchil4367.t1 ID=Gchil4367.t1|Name=Gchil4367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=639bp
MDDQPVALHDAQSPLAVTPSPTSFKQQPPPSSSSPQSLASPHSARLPAPA
RLQASALEPHQQAASGADDAIADRAPRGAASGVSDDHHAAVDEQHSRSDR
VLNIAVASSQMTHASQPSLPDMASDLQHDLQTVAHHALHVKPQPLPHPLS
HPPPPTPAQLESQPTHVTETQLDEPPAQSAIEFSSATLHAQQAIVEAEQQ
QTQSIHTSHEIPSQEMIPSQSEPQLVQTDVTSATDSDMHHAEAVVHELQK
SESQLDAHNVLSEEHASQLAHSSAFPTAAVAVSAPATITDFAVNKVVDDE
HTRVANEFDPKGPQAPHQAISIAPRRVTEQSKRGSERYHASGEQLKTLVS
AFEHNPTPDASTLTYLSEAIGMPMHNLVLWFKNRRARHKRSHINQMARGG
KRSYVKSGIYSRHKRVKHSHRQPAPATVPPGGLTLPLSHGLTSISSPLAV
SSIALPTVDPKIPAIAVAGRDAEELVKTGAPQPSRMKRPRFSAVPELVGD
DNPCQGWTSEECHRRCLAFFERTTSITCPEQSKLVENVSSEFFLSELQSG
LTLVSAMQPLETSVGVLDAIMEKLPAQGPRLSSGSKVLMREFLARIRTGS
AEQFVLIEGATDAAETMAESHGSVVQDVVPNASSAGEQ*

mRNA from alignment at tig00004373_pilon:2357782..2359698-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil4367.t1 ID=Gchil4367.t1|Name=Gchil4367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00004373_pilon:2357782..2359698- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACCAGCCCGTCGCACTTCACGACGCGCAGTCTCCACTCGCAGT
CACACCCTCACCAACATCGTTTAAACAGCAACCGCCGCCTTCTTCGTCAT
CGCCTCAGTCGCTTGCCTCGCCGCACAGCGCGCGTCTCCCCGCTCCCGCT
CGTCTTCAAGCGTCTGCACTTGAGCCTCACCAACAAGCGGCTTCCGGCGC
TGATGATGCCATTGCTGACCGTGCTCCGCGTGGGGCTGCCAGCGGAGTGA
GTGACGATCACCATGCTGCTGTCGACGAACAGCACTCGCGCTCGGACCGC
GTACTCAACATCGCGGTGGCGTCTTCTCAGATGACTCATGCGTCCCAACC
GTCTCTTCCGGACATGGCTTCGGATTTGCAACATGATTTACAAACCGTTG
CACATCACGCCTTGCATGTAAAGCCACAGCCACTACCGCACCCATTGTCA
CATCCACCACCACCAACGCCCGCGCAACTCGAGTCGCAACCCACGCATGT
GACTGAGACACAGTTGGATGAGCCACCGGCGCAGAGTGCGATTGAGTTCA
GCTCAGCCACTCTGCATGCTCAACAGGCCATAGTGGAAGCCGAGCAACAA
CAAACCCAGTCAATCCATACATCACACGAGATTCCGTCACAGGAAATGAT
ACCGTCGCAATCGGAGCCTCAGCTGGTGCAGACAGATGTGACAAGCGCTA
CCGACTCTGATATGCACCACGCCGAGGCGGTTGTGCATGAATTACAAAAG
TCCGAGTCACAACTGGATGCCCACAACGTCCTCTCTGAAGAGCATGCTTC
TCAACTTGCTCATTCCAGTGCGTTTCCTACAGCAGCCGTAGCCGTATCGG
CTCCAGCTACCATTACTGATTTTGCAGTCAACAAGGTTGTAGATGATGAG
CATACACGGGTGGCCAATGAGTTCGACCCAAAGGGCCCTCAGGCTCCACA
CCAAGCTATATCTATCGCACCGCGCCGCGTCACAGAGCAATCGAAACGGG
GTTCGGAACGCTACCACGCATCAGGTGAGCAGCTCAAGACCCTAGTTTCC
GCATTTGAACACAATCCAACTCCAGATGCATCTACTTTAACTTATCTCTC
GGAAGCTATCGGCATGCCGATGCATAACCTCGTGCTATGGTTTAAGAATC
GTCGCGCACGCCACAAACGCTCTCATATCAATCAGATGGCCAGGGGCGGA
AAGCGGAGCTATGTCAAGAGCGGAATATATTCGAGGCACAAGAGAGTCAA
GCATAGTCATCGGCAACCTGCCCCAGCCACCGTGCCACCTGGCGGACTTA
CCCTTCCCCTGTCGCATGGTCTTACCTCGATTTCATCCCCCCTCGCCGTT
TCGTCTATTGCCCTACCGACTGTCGACCCAAAGATCCCTGCAATTGCTGT
TGCGGGGCGTGACGCTGAAGAGCTCGTCAAGACGGGCGCACCACAACCAT
CTCGTATGAAGAGACCCCGCTTCTCGGCCGTTCCTGAATTGGTTGGTGAT
GATAATCCCTGTCAAGGTTGGACATCAGAGGAATGTCATCGGAGATGCCT
CGCCTTTTTCGAGAGGACAACCTCCATTACTTGTCCGGAGCAGTCCAAAC
TTGTCGAGAACGTTAGCTCAGAGTTTTTTTTGTCGGAGTTACAAAGTGGG
TTGACTTTGGTCAGCGCAATGCAACCGTTGGAAACTAGCGTTGGAGTGCT
GGACGCAATAATGGAAAAGCTTCCTGCACAAGGGCCGCGTCTCAGCTCCG
GTTCCAAGGTTCTCATGCGTGAATTTCTCGCTCGAATTAGAACAGGAAGT
GCGGAGCAATTTGTTCTTATCGAAGGAGCTACGGATGCTGCAGAGACTAT
GGCGGAGAGCCACGGGAGCGTGGTTCAAGATGTTGTGCCCAACGCCTCGT
CGGCGGGGGAACAATGA

Coding sequence (CDS) from alignment at tig00004373_pilon:2357782..2359698-

>Gchil4367.t1 ID=Gchil4367.t1|Name=Gchil4367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1917bp|location=Sequence derived from alignment at tig00004373_pilon:2357782..2359698- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACCAGCCCGTCGCACTTCACGACGCGCAGTCTCCACTCGCAGT
CACACCCTCACCAACATCGTTTAAACAGCAACCGCCGCCTTCTTCGTCAT
CGCCTCAGTCGCTTGCCTCGCCGCACAGCGCGCGTCTCCCCGCTCCCGCT
CGTCTTCAAGCGTCTGCACTTGAGCCTCACCAACAAGCGGCTTCCGGCGC
TGATGATGCCATTGCTGACCGTGCTCCGCGTGGGGCTGCCAGCGGAGTGA
GTGACGATCACCATGCTGCTGTCGACGAACAGCACTCGCGCTCGGACCGC
GTACTCAACATCGCGGTGGCGTCTTCTCAGATGACTCATGCGTCCCAACC
GTCTCTTCCGGACATGGCTTCGGATTTGCAACATGATTTACAAACCGTTG
CACATCACGCCTTGCATGTAAAGCCACAGCCACTACCGCACCCATTGTCA
CATCCACCACCACCAACGCCCGCGCAACTCGAGTCGCAACCCACGCATGT
GACTGAGACACAGTTGGATGAGCCACCGGCGCAGAGTGCGATTGAGTTCA
GCTCAGCCACTCTGCATGCTCAACAGGCCATAGTGGAAGCCGAGCAACAA
CAAACCCAGTCAATCCATACATCACACGAGATTCCGTCACAGGAAATGAT
ACCGTCGCAATCGGAGCCTCAGCTGGTGCAGACAGATGTGACAAGCGCTA
CCGACTCTGATATGCACCACGCCGAGGCGGTTGTGCATGAATTACAAAAG
TCCGAGTCACAACTGGATGCCCACAACGTCCTCTCTGAAGAGCATGCTTC
TCAACTTGCTCATTCCAGTGCGTTTCCTACAGCAGCCGTAGCCGTATCGG
CTCCAGCTACCATTACTGATTTTGCAGTCAACAAGGTTGTAGATGATGAG
CATACACGGGTGGCCAATGAGTTCGACCCAAAGGGCCCTCAGGCTCCACA
CCAAGCTATATCTATCGCACCGCGCCGCGTCACAGAGCAATCGAAACGGG
GTTCGGAACGCTACCACGCATCAGGTGAGCAGCTCAAGACCCTAGTTTCC
GCATTTGAACACAATCCAACTCCAGATGCATCTACTTTAACTTATCTCTC
GGAAGCTATCGGCATGCCGATGCATAACCTCGTGCTATGGTTTAAGAATC
GTCGCGCACGCCACAAACGCTCTCATATCAATCAGATGGCCAGGGGCGGA
AAGCGGAGCTATGTCAAGAGCGGAATATATTCGAGGCACAAGAGAGTCAA
GCATAGTCATCGGCAACCTGCCCCAGCCACCGTGCCACCTGGCGGACTTA
CCCTTCCCCTGTCGCATGGTCTTACCTCGATTTCATCCCCCCTCGCCGTT
TCGTCTATTGCCCTACCGACTGTCGACCCAAAGATCCCTGCAATTGCTGT
TGCGGGGCGTGACGCTGAAGAGCTCGTCAAGACGGGCGCACCACAACCAT
CTCGTATGAAGAGACCCCGCTTCTCGGCCGTTCCTGAATTGGTTGGTGAT
GATAATCCCTGTCAAGGTTGGACATCAGAGGAATGTCATCGGAGATGCCT
CGCCTTTTTCGAGAGGACAACCTCCATTACTTGTCCGGAGCAGTCCAAAC
TTGTCGAGAACGTTAGCTCAGAGTTTTTTTTGTCGGAGTTACAAAGTGGG
TTGACTTTGGTCAGCGCAATGCAACCGTTGGAAACTAGCGTTGGAGTGCT
GGACGCAATAATGGAAAAGCTTCCTGCACAAGGGCCGCGTCTCAGCTCCG
GTTCCAAGGTTCTCATGCGTGAATTTCTCGCTCGAATTAGAACAGGAAGT
GCGGAGCAATTTGTTCTTATCGAAGGAGCTACGGATGCTGCAGAGACTAT
GGCGGAGAGCCACGGGAGCGTGGTTCAAGATGTTGTGCCCAACGCCTCGT
CGGCGGGGGAACAATGA