Gchil4166.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4166.t1
Unique NameGchil4166.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length134
Homology
BLAST of Gchil4166.t1 vs. uniprot
Match: A0A2V3J1A4_9FLOR (Putative DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1A4_9FLOR)

HSP 1 Score: 205 bits (521), Expect = 4.890e-66
Identity = 111/133 (83.46%), Postives = 116/133 (87.22%), Query Frame = 0
Query:    1 MDEDDVDNHIQDYNDDVPQEEDYEEDNVDNPREPETGASKNGLVDATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP 133
            M++DD DN +QDYND VP  EDY +DN+DN  EPETG       DA  AEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP
Sbjct:    1 MEDDDGDNRMQDYND-VP--EDYADDNIDNAAEPETGDGGQAPKDAIQAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP 130          
BLAST of Gchil4166.t1 vs. uniprot
Match: R7QAB3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAB3_CHOCR)

HSP 1 Score: 143 bits (361), Expect = 1.150e-41
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0
Query:   50 EEKITTKFLTKYERARILGTRALQLSMGAPPMVEVM-GDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP 133
            +E+ITT+ LTKYERARILGTRALQLSMGAPPMVE+  G+TDPLVIAKRELQEKKIPITIRRFLPDG+YEDW L +L IPSMG AP
Sbjct:   47 KERITTRTLTKYERARILGTRALQLSMGAPPMVEIQPGETDPLVIAKRELQEKKIPITIRRFLPDGSYEDWPLDDLTIPSMGQAP 131          
BLAST of Gchil4166.t1 vs. uniprot
Match: UPI001E1D4A41 (DNA-directed RNA polymerases I, II, and III subunit RPABC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4A41)

HSP 1 Score: 129 bits (325), Expect = 6.140e-36
Identity = 70/116 (60.34%), Postives = 83/116 (71.55%), Query Frame = 0
Query:   16 DVPQEEDYEEDNVDNPREPETGASKNGLVDA-------TPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQEL 124
            D P E+  +E N D+  E + G  +     A        P  E+ITT FLTKYERARILGTRALQ+SMGAPPMV V G++DPL+IA +EL EKKIPITIRR+LPDG+YEDWTL EL
Sbjct:   32 DAPDEDFEDEGNADDAVEAQGGEEEGASRVAGAAGGRGVPRSERITTHFLTKYERARILGTRALQISMGAPPMVNVTGESDPLMIAHKELMEKKIPITIRRYLPDGSYEDWTLPEL 147          
BLAST of Gchil4166.t1 vs. uniprot
Match: A0A1X6P0J5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0J5_PORUM)

HSP 1 Score: 128 bits (321), Expect = 1.180e-35
Identity = 62/103 (60.19%), Postives = 84/103 (81.55%), Query Frame = 0
Query:   25 EDNVDNPREPETGASK-NGLVDATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            +DNVD+  EPE G ++ +G     P  ++IT +++TKYERAR+LGTRALQ+SMGAP MVE++G+TDPL+IA +EL++KKIPITIRR+LPDG++EDW   EL I
Sbjct:   23 DDNVDDAPEPEGGEARASGSTYTQPNVKRITARYMTKYERARVLGTRALQISMGAPVMVELVGETDPLMIAHKELRQKKIPITIRRYLPDGSFEDWNCSELTI 125          
BLAST of Gchil4166.t1 vs. uniprot
Match: A0A7S0BD28_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BD28_9RHOD)

HSP 1 Score: 126 bits (317), Expect = 8.410e-35
Identity = 67/114 (58.77%), Postives = 88/114 (77.19%), Query Frame = 0
Query:   21 EDYEEDNV----DNPREPETGASKNGLVD----ATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            +DYE D++    ++ RE E G  +    D    A P EE+ TTK++TKYERARILGTRALQ+SMGAP +VE+ G+TDPLVIA++EL+EKKIPIT+RR+LPDG+YEDW + +L I
Sbjct:   31 DDYEMDDMSGGGESDREVEEGDGEEENDDSENRAVPREERTTTKYMTKYERARILGTRALQISMGAPILVELEGETDPLVIAQKELREKKIPITVRRYLPDGSYEDWNVDDLII 144          
BLAST of Gchil4166.t1 vs. uniprot
Match: A0A7S4B2A3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2A3_CHRCT)

HSP 1 Score: 125 bits (315), Expect = 3.110e-34
Identity = 58/83 (69.88%), Postives = 73/83 (87.95%), Query Frame = 0
Query:   45 DATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIP 127
            +ATPA E+ITT ++TK+ERARILGTRALQ+SM AP MVE+ G+TDPL IA +EL+++KIPIT+RRFLPDG+YEDW + EL IP
Sbjct:   59 EATPASERITTPYMTKFERARILGTRALQISMNAPVMVELEGETDPLAIAAKELRKRKIPITVRRFLPDGSYEDWNVDELIIP 141          
BLAST of Gchil4166.t1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.860e-33
Identity = 58/92 (63.04%), Postives = 75/92 (81.52%), Query Frame = 0
Query:   35 ETGASKNGLVDATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            ETG +  G     PA+E+IT+K++TKYE+ARILGTRALQ+SM AP MV++   TDPL IA++EL+E+KIPI IRR+LPDG+YEDW L+EL I
Sbjct:   43 ETGGAAPGAPPVKPAQERITSKYMTKYEKARILGTRALQISMNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWALEELMI 134          
BLAST of Gchil4166.t1 vs. uniprot
Match: A0A7E4ZZD5_PANRE (RPB6 homolog n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4ZZD5_PANRE)

HSP 1 Score: 121 bits (303), Expect = 6.770e-33
Identity = 55/79 (69.62%), Postives = 71/79 (89.87%), Query Frame = 0
Query:   48 PAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            PAE ++TT F+TKYERARILGTRALQ++MGAP MVE+ G+TDPL IA++EL+E+KIPI IRR+LPDG++EDW + EL+I
Sbjct:   47 PAENRVTTPFMTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKEQKIPIIIRRYLPDGSFEDWEIDELHI 125          
BLAST of Gchil4166.t1 vs. uniprot
Match: A0A1V9XI16_9ACAR (RPB6 homolog n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XI16_9ACAR)

HSP 1 Score: 118 bits (296), Expect = 3.960e-32
Identity = 55/86 (63.95%), Postives = 74/86 (86.05%), Query Frame = 0
Query:   41 NGLVDATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            +G  + T  E++ITT+++TKYERAR+LGTRALQ++MGAP MVE+ G+TDPL IAK+EL+ +KIPITIRR+LPDG++EDW + EL I
Sbjct:   17 DGTGEPTQNEKRITTQYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLQIAKKELKVRKIPITIRRYLPDGSFEDWGIDELII 102          
BLAST of Gchil4166.t1 vs. uniprot
Match: D8LZ20_BLAHO (Uncharacterized protein n=2 Tax=Blastocystis TaxID=12967 RepID=D8LZ20_BLAHO)

HSP 1 Score: 117 bits (294), Expect = 4.080e-32
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0
Query:   47 TPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELN 125
            TP  E++TT +LTKYERARILGTRALQLSM APPMVEV G TD L IA  EL++KKIP+ IRRFLP G +EDW L ELN
Sbjct:    2 TPISERVTTPYLTKYERARILGTRALQLSMNAPPMVEVNGQTDTLQIALEELRQKKIPLIIRRFLPSGKFEDWRLDELN 80          
The following BLAST results are available for this feature:
BLAST of Gchil4166.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1A4_9FLOR4.890e-6683.46Putative DNA-directed RNA polymerases I, II, and I... [more]
R7QAB3_CHOCR1.150e-4183.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1D4A416.140e-3660.34DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1X6P0J5_PORUM1.180e-3560.19Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0BD28_9RHOD8.410e-3558.77Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S4B2A3_CHRCT3.110e-3469.88Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A835ZH45_9STRA5.860e-3363.04DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
A0A7E4ZZD5_PANRE6.770e-3369.62RPB6 homolog n=1 Tax=Panagrellus redivivus TaxID=6... [more]
A0A1V9XI16_9ACAR3.960e-3263.95RPB6 homolog n=1 Tax=Tropilaelaps mercedesae TaxID... [more]
D8LZ20_BLAHO4.080e-3272.15Uncharacterized protein n=2 Tax=Blastocystis TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6SMARTSM01409RNA_pol_Rpb6_2coord: 52..105
e-value: 1.3E-7
score: 41.3
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6PFAMPF01192RNA_pol_Rpb6coord: 53..105
e-value: 2.9E-15
score: 56.0
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 1..128
e-value: 3.7E-46
score: 154.7
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..128
e-value: 2.5E-44
score: 148.6
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Kcoord: 56..111
score: 19.091671
IPR036161RPB6/omega subunit-like superfamilyGENE3D3.90.940.10coord: 1..127
e-value: 4.4E-43
score: 148.3
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 4..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availablePANTHERPTHR47227DNA-DIRECTED RNA POLYMERASE SUBUNIT Kcoord: 15..124
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved sitePROSITEPS01111RNA_POL_K_14KDcoord: 59..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1181116..1181685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4166.t1Gchil4166.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 1181116..1181685 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4166.t1 ID=Gchil4166.t1|Name=Gchil4166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=134bp
MDEDDVDNHIQDYNDDVPQEEDYEEDNVDNPREPETGASKNGLVDATPAE
EKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQE
KKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006110Pol_omega/Rpo6/RPB6
IPR028363RPB6
IPR006111Rpo6/Rpb6
IPR036161RPB6/omega-like_sf
IPR020708DNA-dir_RNA_polK_14-18kDa_CS