Gchil4166.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4166.t1
Unique NameGchil4166.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1181116..1181685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog135651.CBN14268
PFAMsRNA_pol_Rpb6
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K03014
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000003,GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue2.11e-33
EggNOG OGsCOG1758@1|root,KOG3405@2759|Eukaryota,3A3U5@33154|Opisthokonta,3BPZF@33208|Metazoa,3D6JK@33213|Bilateria,40E6Y@6231|Nematoda,1KWN5@119089|Chromadorea,411TE@6236|Rhabditida
DescriptionDNA-dependent RNA polymerases catalyze the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. Pol II is the central component of the basal RNA polymerase II transcription machinery. Pols are composed of mobile elements that move relative to each other. In Pol II, RPB6 is part of the clamp element and together with parts of RPB1 and RPB2 forms a pocket to which the RPB4-RPB7 subcomplex binds (By similarity)
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4166Gchil4166Gracilaria chilensis NLEC103_M9 malegenetig00004373_pilon 1181116..1181685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4166.t1Gchil4166.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004373_pilon 1181116..1181685 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4166.t1.start1Gchil4166.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004373_pilon 1181116..1181118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4166.t1.CDS1Gchil4166.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1181116..1181141 +
Gchil4166.t1.CDS2Gchil4166.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1181225..1181388 +
Gchil4166.t1.CDS3Gchil4166.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004373_pilon 1181474..1181685 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4166.t1.exon1Gchil4166.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1181116..1181141 +
Gchil4166.t1.exon2Gchil4166.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1181225..1181388 +
Gchil4166.t1.exon3Gchil4166.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004373_pilon 1181474..1181685 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4166.t1.intron1Gchil4166.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1181142..1181224 +
Gchil4166.t1.intron2Gchil4166.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004373_pilon 1181389..1181473 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4166.t1.stop1Gchil4166.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004373_pilon 1181683..1181685 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4166.t1 ID=Gchil4166.t1|Name=Gchil4166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=134bp
MDEDDVDNHIQDYNDDVPQEEDYEEDNVDNPREPETGASKNGLVDATPAE
EKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQE
KKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP*
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spliced messenger RNA

>Gchil4166.t1 ID=Gchil4166.t1|Name=Gchil4166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00004373_pilon:1181116..1181685+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAAGACGATGTTGATAACCATATACAGGATTACAACGACGACGT
TCCGCAGGAGGAGGATTATGAAGAAGACAATGTAGACAACCCAAGAGAAC
CAGAGACTGGCGCATCAAAAAACGGTCTTGTAGACGCCACGCCGGCAGAA
GAGAAGATAACTACGAAATTCCTCACCAAATACGAGAGAGCACGTATATT
AGGAACACGGGCGCTACAACTGAGCATGGGTGCACCACCGATGGTAGAGG
TAATGGGTGATACGGACCCCCTTGTTATAGCCAAACGAGAGCTTCAGGAA
AAGAAAATACCAATCACAATTAGAAGGTTTTTGCCGGATGGGACGTATGA
GGATTGGACTTTGCAAGAACTCAATATCCCGAGCATGGGCTCTGCACCGT
AA
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protein sequence of Gchil4166.t1

>Gchil4166.t1 ID=Gchil4166.t1|Name=Gchil4166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=134bp
MDEDDVDNHIQDYNDDVPQEEDYEEDNVDNPREPETGASKNGLVDATPAE
EKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQE
KKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP*
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mRNA from alignment at tig00004373_pilon:1181116..1181685+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4166.t1 ID=Gchil4166.t1|Name=Gchil4166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004373_pilon:1181116..1181685+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAAGACGATGTTGATAACCAGTACGTGCAGATTCACGAGCGCTG
GGGGAGATTTGCTTCTTATGCACTAGGTGTTTTGCTAACTATCTTTCGGC
ATTTTATAGTATACAGGATTACAACGACGACGTTCCGCAGGAGGAGGATT
ATGAAGAAGACAATGTAGACAACCCAAGAGAACCAGAGACTGGCGCATCA
AAAAACGGTCTTGTAGACGCCACGCCGGCAGAAGAGAAGATAACTACGAA
ATTCCTCACCAAATACGAGAGAGGTGAGTTTTTTTGTACGACTTCAGTTG
ATGTATGAGCAGCAGTTTCTAACTAATGCACCAAAATACTATCGTTGCGT
AACGGCAGCACGTATATTAGGAACACGGGCGCTACAACTGAGCATGGGTG
CACCACCGATGGTAGAGGTAATGGGTGATACGGACCCCCTTGTTATAGCC
AAACGAGAGCTTCAGGAAAAGAAAATACCAATCACAATTAGAAGGTTTTT
GCCGGATGGGACGTATGAGGATTGGACTTTGCAAGAACTCAATATCCCGA
GCATGGGCTCTGCACCGTAA
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Coding sequence (CDS) from alignment at tig00004373_pilon:1181116..1181685+

>Gchil4166.t1 ID=Gchil4166.t1|Name=Gchil4166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00004373_pilon:1181116..1181685+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAAGACGATGTTGATAACCATATACAGGATTACAACGACGACGT
TCCGCAGGAGGAGGATTATGAAGAAGACAATGTAGACAACCCAAGAGAAC
CAGAGACTGGCGCATCAAAAAACGGTCTTGTAGACGCCACGCCGGCAGAA
GAGAAGATAACTACGAAATTCCTCACCAAATACGAGAGAGCACGTATATT
AGGAACACGGGCGCTACAACTGAGCATGGGTGCACCACCGATGGTAGAGG
TAATGGGTGATACGGACCCCCTTGTTATAGCCAAACGAGAGCTTCAGGAA
AAGAAAATACCAATCACAATTAGAAGGTTTTTGCCGGATGGGACGTATGA
GGATTGGACTTTGCAAGAACTCAATATCCCGAGCATGGGCTCTGCACCGT
AA
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