Gchil3834.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3834.t1
Unique NameGchil3834.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length355
Homology
BLAST of Gchil3834.t1 vs. uniprot
Match: A0A2V3IYT8_9FLOR (Protein DECREASED SIZE EXCLUSION LIMIT 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYT8_9FLOR)

HSP 1 Score: 260 bits (664), Expect = 2.740e-80
Identity = 144/332 (43.37%), Postives = 202/332 (60.84%), Query Frame = 0
Query:    4 RRRPQARAVLRGHAAALTALTFHKSGDAAHMLYSGDEAGDVRMWDCRYEETVLLLSRPSHLRQSPILTILQHPHDALHLRVHHKSGVVRKLHLEYGALNNDLCAWNVADARLLRPDFAFDGYHPHAVLTNGFCAICHLTSAVWVGACAHGDQVAVLHDDRER---VTIQQRLKLGADDANAHPNAARKAGMVMSVCCCDH-DVLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGAFDKVVAVGDVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDY 331
            R RP+A+A+LRGH   +T++ FH   + AH+L++GDE+G +R+WD R+EET+ + + P  L  SP+  + QH      + V +K+G V +L++EY    ++  A  +   + +     F  +   AVL +GFC IC++ +  WVGAC  GD+  ++ D+R       +  RLKL      A      K GMVM+VC     DVL  +EDGS+AVWDLR+   ARS  KV  DA+TSVACSP GRVGVA GA+D + AV D++      +   +LR   G ++V W   G  +A+ GWDGVVR+WDGRRR  ALLRR+ SLRWH+GSV  V Y
Sbjct:   70 RPRPEAKAILRGHVTPVTSVCFHPHEEHAHVLFTGDESGSLRVWDSRFEETLQVFTAPERLGASPVQGVAQHVAHINEVLVQYKNGFVLRLNVEYKKNVSEFDAVYIGGFKTVNAGQRFLQHEDGAVLCDGFCRICYVDANTWVGACGDGDECIIIRDERAAGGGSGVVGRLKL------APTATGEKGGMVMAVCAAGGMDVLGGYEDGSVAVWDLRNRRTARSRVKVGADAVTSVACSPRGRVGVAGGAYDHIAAVADLSGDTIAAVAKGSLRVS-GISEVKWRADGKVVASGGWDGVVRIWDGRRRQDALLRRIASLRWHEGSVLSVGY 394          
BLAST of Gchil3834.t1 vs. uniprot
Match: A0A7R9SVV4_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVV4_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 1.310e-13
Identity = 58/179 (32.40%), Postives = 86/179 (48.04%), Query Frame = 0
Query:  185 AARKAGMVMSVCCCDHD-------VLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGAFDKVVAVG-DVTRCDARVLETATLRSGV-----GCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALW 350
            A +  GM MS+    H        ++  +EDG++AVWD R      + ++   DA   VA     +   + GA  KV+ +  D+ + D  V  T   +        G   VA  G G  LATAGWDG VRV+D +      LR + +L++H  ++ CV +  D+  LAS  RD  +ALW
Sbjct:   55 AGKSCGMCMSMAPFLHPQNAGQGGLMAGYEDGTVAVWDFRFPGAPLAFSRSHSDAALGVAVHSESKKSTSAGADGKVLLLSLDMGKHDEEVEATVLKQKQAQQFNQGIGDVAMRGDGRILATAGWDGKVRVFDTKA-----LRPLAALKYHTSTITCVAFSPDNHLLASSARDANIALW 228          
BLAST of Gchil3834.t1 vs. uniprot
Match: A0A2V0PFL4_9CHLO (Guanine nucleotide-binding subunit beta n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PFL4_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 3.220e-10
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 0
Query:  202 VLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVG---------------AFDKVVAVGDVTRCDARVLETATLR-SGVGCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDY-GCDDRRLASGGRDGCVALW 350
            VL  +E+G++A+WD R   +  +  ++  +   ++A  P G VG A G               + D  +A   V      +  TA+ +    G   VA  G G  +A+A WDG VR+W  RR A      +  LR+H  S A V + G  D  LASGGRDG VALW
Sbjct:  272 VLAGYENGAVALWDGRAPGQPLAEAQLHSEPAMALALGPAGAVGPAAGXXXXXXAAPLCAVSGSADSALAFFSVDAAAGALRVTASRQLPSPGVGDVAVRGDGRVVASAHWDGRVRLWHARRAAP-----LGVLRYHSKSAAAVAFCGAGDMALASGGRDGAVALW 432          
BLAST of Gchil3834.t1 vs. uniprot
Match: A0A7J7Q646_9CHLO (WD40-repeat-containing domain protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q646_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 4.440e-8
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = 0
Query:  206 HEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGAFDKVVAVG--DVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDY 331
            +EDGS+A+WD+R   +  +  K+  +A+  VA +P    G + G+ DK V+     + R   R    A L    G A VA  G G  +A+AGWDG VRVW  R+        +  LRWH   VACV +
Sbjct:   97 YEDGSVALWDVRRPNQPLASAKLHSEAIMCVAVAPDCTSGFS-GSADKHVSAFKLSIPRGQLRPSVQAALPE-PGVADVAVRGDGRIVASAGWDGRVRVWHARKWLP-----LAVLRWHSQQVACVQF 217          
BLAST of Gchil3834.t1 vs. uniprot
Match: I0YUX2_COCSC (WD40 repeat-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YUX2_COCSC)

HSP 1 Score: 64.3 bits (155), Expect = 7.810e-8
Identity = 98/377 (25.99%), Postives = 151/377 (40.05%), Query Frame = 0
Query:    7 PQARAVLRGHAAALTALTFHKSGDAAHMLYSGDEAGDVRMWDCRYEETVLLLSRPSHLRQSPILTILQHPHDALHLRVHHKSGVVRKLHLEYGALNND----LCAWNVADARLLRPDFAFDGYHPHAVLTNG--FCAICHLTS-----------AVWVGACAHGDQ---------VAVLHDDRERVTIQQRLKLGADDANAHPNAARKAGMVMSV-CCCDHDVLTAH-----EDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGAFDKVVAVG-DVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALW 350
            P    VLRGH   + AL FH   D   +LYSGD  G + +WD +              ++ P+ +   HP +A         GV+    L    L+      +  W VA+      D + +      + TN   FC  C + S           A+ +     G           V V   D   V + + + L      AH   A K GM M++      +  T H     EDG++AVWD          +++  + + ++   P G+ GV+  A DK+     D  + + R  E   L+   G A VA    G   A AGWDG VR++    R     + +  L++H+  V  V +    +RLASG +DG +A+W
Sbjct:   11 PDPEYVLRGHRTDVQALLFHPEMD---LLYSGDAEGGLVVWDLQ--------------QRRPVSSQRLHPANA---------GVLSLAWLGKNLLSQGRDGTIKGWAVAEDGSCSRDPSLE------LQTNSYNFCR-CSVISYEIDDKPGNGKAILLRESEDGKPGTDESERWLVGVAGSDPATVELWEVMGLVRAHFLAHREDA-KMGMCMALQLFVRPETGTLHAAAGYEDGTVAVWDAAQPDSPILHSRMHAEPVMALVMEPSGKWGVSGSAEDKLAIFSIDWAQLELREEEAVPLKK-PGVAAVALRHDGKIFAVAGWDGRVRLYRCDTR-----KPLAVLQYHRSGVQDVRFDERSKRLASGSKDGSIAMW 347          
BLAST of Gchil3834.t1 vs. uniprot
Match: E1ZDG3_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZDG3_CHLVA)

HSP 1 Score: 56.6 bits (135), Expect = 4.200e-6
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 0
Query:  207 EDGSLAVWDLRHAARA--RSVTKVAPDALTSVACSPFGRVGVAVGAFDKVVAVGDVTRCDARVLETATL---RSGVGCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALW 350
            EDGS+AVW L  A  A  R++  +  + + ++A    G  G A  A D+VV V  +     RV    ++   R G+G   VA       LATAGWDG VRV+  + R+G   R +  L++H  +V  + +      LA+  RDG VALW
Sbjct:   12 EDGSVAVWQLGVAPHAPPRALHTLCREPVMALAVDCTGAGGAAGSAEDQVV-VFRLDHAAGRVSVRHSIEVQRKGIG--DVAVRPDRRLLATAGWDGRVRVY--KYRSG---RPLAILKYHTSAVTGIRFAPRSMLLATAARDGTVALW 152          
BLAST of Gchil3834.t1 vs. uniprot
Match: A0A448Z5E1_9STRA (Utp12 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5E1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.700e-6
Identity = 50/150 (33.33%), Postives = 72/150 (48.00%), Query Frame = 0
Query:  202 VLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGAFDKVVAVGDVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALWD 351
            VL+A  DG++   DL      +++T   P    S+A  P G + VA GA D         R + R+L+  T  +G   AQ+A+SG G  LA+A WDG V++WD   +A      +     H   V CV    D + L SG   G ++ WD
Sbjct:  473 VLSAGLDGTVKAHDLHRYRTFKTLTTPTPCQFLSLAVDPAGEIVVA-GAMDPFHVYAWNLR-NGRLLDVYTGHTGP-VAQLAFSGGGGLLASASWDGTVKLWD-MYKANVATESLS----HNSDVVCVACRPDGKELVSGTIRGLLSFWD 614          
BLAST of Gchil3834.t1 vs. uniprot
Match: A0A6J1J156_CUCMA (protein DECREASED SIZE EXCLUSION LIMIT 1 n=4 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1J156_CUCMA)

HSP 1 Score: 58.9 bits (141), Expect = 5.060e-6
Identity = 95/382 (24.87%), Postives = 159/382 (41.62%), Query Frame = 0
Query:    7 PQARAVLRGHAAALTALTFHKSGDAAHMLYSGDEAGDVRMWDCRYEETVLLLSRPSHLRQSPILTILQHPHDALHLRVHH-KSGVVRKLHLEYGALNN------DLCAWNVADARLLRPDFAFDGY------------HPHAVLT---NGFCAICHLTSAVWVGACAHGDQVAVLHDDRERVTI------QQRLKLGADDANAHPNAARKA-GMVMSVCCCDH-------DVLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGAFDKVVAVG-DVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVVRVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALWD 351
            P   AVLRGH A++T ++FH S     +L+SG   G++R+WD     TV   S   H     I++I        +  V   + G V+   ++  AL+       +  A++     L++    F  +            +P  V T   +G     + T    +        VAV  +    V I      ++ L+L  +     PN + K  G+ M+V            +VL+ +EDGS+  WDLR+     +  K   + + S+        G++  A DK+V    D +     V +  TL    G A+V+        +TAGWD  VR+++ R+ +   +     L++HQ     V Y  + + +AS   D  VALW+
Sbjct:    7 PDPVAVLRGHRASVTDVSFHPSEP---LLFSGSADGELRIWDTAQHRTVS--SAWVHSAAHGIISIACSRSIGTNRVVSQGRDGTVKCWDIDDRALSRVPSVTINTNAYHFCKLSLVKQPSDFSRHDGGPKCSNDIDQNPVEVETLSCSGEKTQENSTEQACISEADGLKYVAVAGEQSSEVEIWDLNSGERLLRLPPNCEGDCPNISTKERGLCMAVQAFLPSKSQGFLNVLSGYEDGSMLWWDLRNPGVPVTSVKCHSEPVLSICVDGSCNGGISGAADDKIVTFSLDHSMGTCLVKKEITLER-PGIAKVSIRPDDKIASTAGWDHRVRIYNYRKGSPLAI-----LKYHQALCNAVSYSDNCKLMASASEDRTVALWE 377          
The following BLAST results are available for this feature:
BLAST of Gchil3834.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IYT8_9FLOR2.740e-8043.37Protein DECREASED SIZE EXCLUSION LIMIT 1 n=1 Tax=G... [more]
A0A7R9SVV4_9CHLO1.310e-1332.40Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A2V0PFL4_9CHLO3.220e-1033.73Guanine nucleotide-binding subunit beta n=1 Tax=Ra... [more]
A0A7J7Q646_9CHLO4.440e-836.72WD40-repeat-containing domain protein n=1 Tax=Scen... [more]
I0YUX2_COCSC7.810e-825.99WD40 repeat-like protein n=1 Tax=Coccomyxa subelli... [more]
E1ZDG3_CHLVA4.200e-635.57Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A448Z5E1_9STRA4.700e-633.33Utp12 domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A6J1J156_CUCMA5.060e-624.87protein DECREASED SIZE EXCLUSION LIMIT 1 n=4 Tax=C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 291..305
score: 34.8
coord: 338..352
score: 39.31
coord: 202..216
score: 30.82
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 6..48
e-value: 0.0013
score: 28.0
coord: 312..351
e-value: 1.0E-5
score: 35.0
coord: 266..304
e-value: 3.9E-4
score: 29.8
coord: 167..215
e-value: 39.0
score: 7.0
coord: 221..259
e-value: 460.0
score: 0.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 281..304
e-value: 6.1E-4
score: 20.6
coord: 317..351
e-value: 0.0031
score: 18.3
coord: 12..48
e-value: 0.28
score: 12.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 13..57
score: 9.706414
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 282..304
score: 9.97376
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 319..354
score: 12.74747
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 179..353
e-value: 4.7E-26
score: 93.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..172
e-value: 2.5E-7
score: 32.2
NoneNo IPR availablePANTHERPTHR19854:SF1GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 1coord: 7..351
NoneNo IPR availablePANTHERPTHR19854TRANSDUCIN BETA-LIKE 3coord: 7..351
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 319..354
score: 11.919224
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 338..352
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 11..353

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:838972..840036 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3834.t1Gchil3834.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000010_pilon 838972..840036 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3834.t1 ID=Gchil3834.t1|Name=Gchil3834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MRGRRRPQARAVLRGHAAALTALTFHKSGDAAHMLYSGDEAGDVRMWDCR
YEETVLLLSRPSHLRQSPILTILQHPHDALHLRVHHKSGVVRKLHLEYGA
LNNDLCAWNVADARLLRPDFAFDGYHPHAVLTNGFCAICHLTSAVWVGAC
AHGDQVAVLHDDRERVTIQQRLKLGADDANAHPNAARKAGMVMSVCCCDH
DVLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGA
FDKVVAVGDVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVV
RVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALW
DASL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf