Gchil3834.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3834.t1
Unique NameGchil3834.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:838972..840036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ26111
PFAMsWD40
Max annot lvl35493|Streptophyta
GOsGO:0000003,GO:0000075,GO:0000151,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006282,GO:0006810,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0009555,GO:0009636,GO:0009663,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010035,GO:0010038,GO:0010044,GO:0010154,GO:0010162,GO:0010431,GO:0010496,GO:0010497,GO:0010564,GO:0016043,GO:0019219,GO:0019222,GO:0021700,GO:0022414,GO:0022611,GO:0031323,GO:0031461,GO:0031570,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034330,GO:0035670,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045216,GO:0045786,GO:0045787,GO:0048229,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048700,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051716,GO:0051726,GO:0060255,GO:0061458,GO:0065007,GO:0071156,GO:0071158,GO:0071695,GO:0071840,GO:0072718,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090567,GO:0097327,GO:0097439,GO:0099402,GO:1902494,GO:1990234,GO:2000026,GO:2000280,GO:2001020
Evalue1.55e-15
EggNOG OGsCOG2319@1|root,KOG0322@2759|Eukaryota,37IE2@33090|Viridiplantae,3GF2H@35493|Streptophyta
DescriptionGuanine nucleotide-binding protein subunit beta-like protein 1 homolog
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3834Gchil3834Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 838972..840036 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3834.t1.stop1Gchil3834.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 838972..838974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3834.t1.CDS1Gchil3834.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 838972..840036 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3834.t1.exon1Gchil3834.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 838972..840036 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3834.t1.start1Gchil3834.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 840034..840036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3834.t1Gchil3834.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 838972..840036 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3834.t1 ID=Gchil3834.t1|Name=Gchil3834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=355bp
MRGRRRPQARAVLRGHAAALTALTFHKSGDAAHMLYSGDEAGDVRMWDCR
YEETVLLLSRPSHLRQSPILTILQHPHDALHLRVHHKSGVVRKLHLEYGA
LNNDLCAWNVADARLLRPDFAFDGYHPHAVLTNGFCAICHLTSAVWVGAC
AHGDQVAVLHDDRERVTIQQRLKLGADDANAHPNAARKAGMVMSVCCCDH
DVLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGA
FDKVVAVGDVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVV
RVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALW
DASL*
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spliced messenger RNA

>Gchil3834.t1 ID=Gchil3834.t1|Name=Gchil3834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000010_pilon:838972..840036- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGGCGACGGCGCCCGCAGGCGCGCGCCGTTCTGCGCGGGCACGC
CGCGGCGCTCACGGCGCTCACCTTCCACAAGAGCGGAGACGCGGCGCACA
TGTTGTACAGCGGCGACGAGGCCGGCGACGTGCGCATGTGGGACTGCCGC
TACGAGGAGACGGTGCTTCTTCTCAGCCGCCCGTCACATCTGCGCCAGTC
GCCCATACTCACCATCCTGCAGCACCCGCACGACGCTCTGCATCTGCGTG
TGCATCACAAGAGTGGCGTCGTGCGCAAGCTGCACTTGGAGTACGGCGCG
CTCAACAATGACTTGTGCGCGTGGAATGTTGCTGACGCCCGCCTCCTGCG
CCCCGACTTTGCCTTCGATGGCTACCATCCGCACGCCGTGCTCACTAATG
GCTTCTGTGCCATTTGCCACCTCACCAGCGCCGTTTGGGTCGGCGCTTGC
GCCCATGGCGACCAAGTGGCCGTGCTTCACGACGACCGCGAGAGAGTAAC
CATACAACAGCGCCTCAAGTTGGGCGCCGACGACGCCAACGCCCATCCCA
ATGCCGCGCGCAAGGCAGGCATGGTCATGAGCGTGTGCTGCTGCGACCAC
GACGTGCTCACCGCGCACGAAGACGGATCGCTGGCTGTCTGGGATCTGCG
CCACGCCGCGCGCGCGCGAAGCGTCACCAAAGTGGCGCCAGACGCGCTCA
CCAGCGTGGCATGCAGCCCGTTCGGGCGCGTGGGCGTCGCTGTGGGCGCC
TTCGACAAGGTGGTTGCCGTAGGCGATGTGACGCGTTGCGACGCGCGTGT
GCTGGAGACCGCCACGCTACGCAGCGGTGTCGGCTGCGCGCAGGTGGCGT
GGAGTGGTCACGGACACACGCTGGCCACCGCGGGATGGGACGGCGTCGTG
CGCGTGTGGGACGGTCGACGACGCGCGGGTGCCTTGTTGAGGCGCGTGTG
CTCGCTGCGTTGGCATCAGGGAAGCGTCGCTTGCGTGGACTATGGCTGTG
ATGACCGTCGCCTCGCCAGCGGCGGCCGCGACGGCTGCGTTGCGCTCTGG
GACGCTTCGCTGTGA
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protein sequence of Gchil3834.t1

>Gchil3834.t1 ID=Gchil3834.t1|Name=Gchil3834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MRGRRRPQARAVLRGHAAALTALTFHKSGDAAHMLYSGDEAGDVRMWDCR
YEETVLLLSRPSHLRQSPILTILQHPHDALHLRVHHKSGVVRKLHLEYGA
LNNDLCAWNVADARLLRPDFAFDGYHPHAVLTNGFCAICHLTSAVWVGAC
AHGDQVAVLHDDRERVTIQQRLKLGADDANAHPNAARKAGMVMSVCCCDH
DVLTAHEDGSLAVWDLRHAARARSVTKVAPDALTSVACSPFGRVGVAVGA
FDKVVAVGDVTRCDARVLETATLRSGVGCAQVAWSGHGHTLATAGWDGVV
RVWDGRRRAGALLRRVCSLRWHQGSVACVDYGCDDRRLASGGRDGCVALW
DASL*
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mRNA from alignment at tig00000010_pilon:838972..840036-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3834.t1 ID=Gchil3834.t1|Name=Gchil3834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000010_pilon:838972..840036- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGGGCGACGGCGCCCGCAGGCGCGCGCCGTTCTGCGCGGGCACGC
CGCGGCGCTCACGGCGCTCACCTTCCACAAGAGCGGAGACGCGGCGCACA
TGTTGTACAGCGGCGACGAGGCCGGCGACGTGCGCATGTGGGACTGCCGC
TACGAGGAGACGGTGCTTCTTCTCAGCCGCCCGTCACATCTGCGCCAGTC
GCCCATACTCACCATCCTGCAGCACCCGCACGACGCTCTGCATCTGCGTG
TGCATCACAAGAGTGGCGTCGTGCGCAAGCTGCACTTGGAGTACGGCGCG
CTCAACAATGACTTGTGCGCGTGGAATGTTGCTGACGCCCGCCTCCTGCG
CCCCGACTTTGCCTTCGATGGCTACCATCCGCACGCCGTGCTCACTAATG
GCTTCTGTGCCATTTGCCACCTCACCAGCGCCGTTTGGGTCGGCGCTTGC
GCCCATGGCGACCAAGTGGCCGTGCTTCACGACGACCGCGAGAGAGTAAC
CATACAACAGCGCCTCAAGTTGGGCGCCGACGACGCCAACGCCCATCCCA
ATGCCGCGCGCAAGGCAGGCATGGTCATGAGCGTGTGCTGCTGCGACCAC
GACGTGCTCACCGCGCACGAAGACGGATCGCTGGCTGTCTGGGATCTGCG
CCACGCCGCGCGCGCGCGAAGCGTCACCAAAGTGGCGCCAGACGCGCTCA
CCAGCGTGGCATGCAGCCCGTTCGGGCGCGTGGGCGTCGCTGTGGGCGCC
TTCGACAAGGTGGTTGCCGTAGGCGATGTGACGCGTTGCGACGCGCGTGT
GCTGGAGACCGCCACGCTACGCAGCGGTGTCGGCTGCGCGCAGGTGGCGT
GGAGTGGTCACGGACACACGCTGGCCACCGCGGGATGGGACGGCGTCGTG
CGCGTGTGGGACGGTCGACGACGCGCGGGTGCCTTGTTGAGGCGCGTGTG
CTCGCTGCGTTGGCATCAGGGAAGCGTCGCTTGCGTGGACTATGGCTGTG
ATGACCGTCGCCTCGCCAGCGGCGGCCGCGACGGCTGCGTTGCGCTCTGG
GACGCTTCGCTGTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:838972..840036-

>Gchil3834.t1 ID=Gchil3834.t1|Name=Gchil3834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000010_pilon:838972..840036- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGGGCGACGGCGCCCGCAGGCGCGCGCCGTTCTGCGCGGGCACGC
CGCGGCGCTCACGGCGCTCACCTTCCACAAGAGCGGAGACGCGGCGCACA
TGTTGTACAGCGGCGACGAGGCCGGCGACGTGCGCATGTGGGACTGCCGC
TACGAGGAGACGGTGCTTCTTCTCAGCCGCCCGTCACATCTGCGCCAGTC
GCCCATACTCACCATCCTGCAGCACCCGCACGACGCTCTGCATCTGCGTG
TGCATCACAAGAGTGGCGTCGTGCGCAAGCTGCACTTGGAGTACGGCGCG
CTCAACAATGACTTGTGCGCGTGGAATGTTGCTGACGCCCGCCTCCTGCG
CCCCGACTTTGCCTTCGATGGCTACCATCCGCACGCCGTGCTCACTAATG
GCTTCTGTGCCATTTGCCACCTCACCAGCGCCGTTTGGGTCGGCGCTTGC
GCCCATGGCGACCAAGTGGCCGTGCTTCACGACGACCGCGAGAGAGTAAC
CATACAACAGCGCCTCAAGTTGGGCGCCGACGACGCCAACGCCCATCCCA
ATGCCGCGCGCAAGGCAGGCATGGTCATGAGCGTGTGCTGCTGCGACCAC
GACGTGCTCACCGCGCACGAAGACGGATCGCTGGCTGTCTGGGATCTGCG
CCACGCCGCGCGCGCGCGAAGCGTCACCAAAGTGGCGCCAGACGCGCTCA
CCAGCGTGGCATGCAGCCCGTTCGGGCGCGTGGGCGTCGCTGTGGGCGCC
TTCGACAAGGTGGTTGCCGTAGGCGATGTGACGCGTTGCGACGCGCGTGT
GCTGGAGACCGCCACGCTACGCAGCGGTGTCGGCTGCGCGCAGGTGGCGT
GGAGTGGTCACGGACACACGCTGGCCACCGCGGGATGGGACGGCGTCGTG
CGCGTGTGGGACGGTCGACGACGCGCGGGTGCCTTGTTGAGGCGCGTGTG
CTCGCTGCGTTGGCATCAGGGAAGCGTCGCTTGCGTGGACTATGGCTGTG
ATGACCGTCGCCTCGCCAGCGGCGGCCGCGACGGCTGCGTTGCGCTCTGG
GACGCTTCGCTGTGA
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